Wall clock time and date at job start Tue Mar 31 2020 14:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35974 * 116.99748 * 2 1 4 4 C 1.38722 * 119.98762 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01849 * 180.02562 * 4 3 2 6 6 C 1.38838 * 119.98572 * 359.97438 * 5 4 3 7 7 N 1.40137 * 120.01562 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00030 * 245.39694 * 7 6 5 9 9 C 1.34774 * 119.99801 * 65.39710 * 7 6 5 10 10 O 1.21587 * 120.00187 * 4.82109 * 9 7 6 11 11 N 1.34774 * 119.99886 * 184.81217 * 9 7 6 12 12 C 1.39227 * 120.00208 * 175.76008 * 11 9 7 13 13 C 1.39489 * 119.83637 * 215.67617 * 12 11 9 14 14 C 1.36366 * 120.16802 * 180.28608 * 13 12 11 15 15 C 1.40877 * 119.82743 * 359.44377 * 14 13 12 16 16 C 1.41149 * 120.16122 * 180.30418 * 15 14 13 17 17 H 1.07997 * 120.00256 * 145.29108 * 16 15 14 18 18 C 1.39894 * 120.00236 * 325.28287 * 16 15 14 19 19 N 1.30885 * 120.00011 * 4.25658 * 18 16 15 20 20 Si 1.86801 * 120.00055 * 184.25018 * 18 16 15 21 21 H 1.48494 * 109.47077 * 90.00469 * 20 18 16 22 22 H 1.48506 * 109.47124 * 210.00421 * 20 18 16 23 23 H 1.48499 * 109.47031 * 330.00231 * 20 18 16 24 24 C 1.40872 * 119.67129 * 0.28462 * 15 14 13 25 25 C 1.36367 * 119.82936 * 359.97438 * 24 15 14 26 26 C 1.38837 * 119.97157 * 0.25458 * 6 5 4 27 27 C 1.38101 * 119.98309 * 359.51553 * 26 6 5 28 28 H 1.09002 * 109.47366 * 59.99666 * 1 2 3 29 29 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47428 * 299.99464 * 1 2 3 31 31 H 1.08005 * 119.98649 * 0.02981 * 4 3 2 32 32 H 1.08001 * 120.00884 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47219 * 270.00408 * 8 7 6 34 34 H 1.09004 * 109.47166 * 29.99946 * 8 7 6 35 35 H 1.08996 * 109.47017 * 150.00051 * 8 7 6 36 36 H 0.97003 * 120.00032 * 355.76760 * 11 9 7 37 37 H 1.08000 * 119.91396 * 0.02630 * 13 12 11 38 38 H 1.08002 * 120.08865 * 179.72520 * 14 13 12 39 39 H 0.96993 * 120.00198 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.07949 * 180.02562 * 24 15 14 41 41 H 1.08005 * 119.91396 * 180.02562 * 25 24 15 42 42 H 1.08001 * 120.01378 * 179.74450 * 26 6 5 43 43 H 1.07997 * 119.99327 * 180.20596 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0591 2.5140 0.0011 6 6 3.3032 3.6786 0.0005 7 7 3.9394 4.9272 0.0016 8 6 3.7999 5.8193 1.1552 9 6 4.6795 5.3073 -1.0587 10 8 4.7243 4.6066 -2.0513 11 7 5.3697 6.4642 -1.0187 12 6 6.2035 6.8143 -2.0772 13 6 7.3985 7.4886 -1.8258 14 6 8.2174 7.8399 -2.8580 15 6 7.8596 7.5098 -4.1799 16 6 8.7051 7.8644 -5.2531 17 1 8.7901 7.2142 -6.1113 18 6 9.4331 9.0580 -5.2052 19 7 9.3952 9.8050 -4.1311 20 14 10.4593 9.5857 -6.6741 21 1 9.6310 10.4176 -7.5835 22 1 11.6255 10.3764 -6.2049 23 1 10.9375 8.3827 -7.4017 24 6 6.6540 6.8237 -4.4254 25 6 5.8427 6.4837 -3.3834 26 6 1.9167 3.6056 0.0048 27 6 1.2904 2.3747 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 4.0194 0.3779 0.0005 32 1 5.1376 2.5701 0.0019 33 1 2.9333 6.4648 1.0127 34 1 3.6659 5.2257 2.0595 35 1 4.6968 6.4312 1.2518 36 1 5.2857 7.0529 -0.2523 37 1 7.6737 7.7367 -0.8113 38 1 9.1402 8.3659 -2.6621 39 1 9.9002 10.6324 -4.0978 40 1 6.3734 6.5670 -5.4362 41 1 4.9182 5.9574 -3.5700 42 1 1.3281 4.5110 0.0086 43 1 0.2120 2.3178 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562066534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:04 Heat of formation + Delta-G solvation = 4.677996 kcal Electronic energy + Delta-G solvation = -26216.623090 eV Core-core repulsion = 22420.877129 eV Total energy + Delta-G solvation = -3795.745961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74163 -39.85377 -38.06256 -37.02265 -35.05963 -34.43803 -32.82648 -31.26005 -29.85897 -29.45701 -28.67338 -27.52462 -26.60075 -24.87525 -22.78252 -22.64091 -21.34751 -20.70229 -19.49950 -18.38903 -18.06719 -17.27800 -16.88079 -16.53508 -15.94096 -15.85923 -15.21909 -15.06135 -14.66363 -14.12231 -13.89395 -13.84297 -13.60415 -13.32343 -13.04212 -12.86234 -12.77275 -12.64985 -12.41338 -12.14609 -12.04753 -11.72253 -11.39587 -11.26384 -11.14075 -11.05427 -10.90418 -10.49076 -10.11542 -9.81043 -9.45750 -9.18602 -9.14527 -9.04088 -8.75221 -8.02340 -7.51118 -6.83168 -6.59195 -4.30243 1.22068 1.22436 2.63183 2.81738 3.07908 3.10907 3.12115 3.16006 3.16968 3.52698 3.68854 4.00632 4.31164 4.60512 4.71314 4.73850 4.84773 4.87340 4.92642 5.14967 5.18288 5.19578 5.35515 5.44259 5.47989 5.68465 5.76540 5.87522 6.13857 6.19689 6.30513 6.43151 6.47963 6.68920 6.77885 6.98347 7.05393 7.14923 7.24770 7.27224 7.38209 7.68646 7.86386 7.97124 8.12242 8.33058 8.40818 8.67199 8.92740 8.96645 9.08183 10.32440 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.002243 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.934545 B =12482.301939 C =13049.756797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.120 3.880 4 C -0.139 4.139 5 C -0.066 4.066 6 C 0.134 3.866 7 N -0.595 5.595 8 C 0.081 3.919 9 C 0.697 3.303 10 O -0.563 6.563 11 N -0.663 5.663 12 C 0.021 3.979 13 C -0.121 4.121 14 C -0.140 4.140 15 C 0.099 3.901 16 C -0.461 4.461 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.815 5.815 20 Si 0.915 3.085 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.204 4.204 25 C -0.085 4.085 26 C -0.083 4.083 27 C -0.198 4.198 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.392 0.608 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.277 0.723 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 -10.132 13.354 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.075 3.925 4 C -0.158 4.158 5 C -0.085 4.085 6 C 0.043 3.957 7 N -0.330 5.330 8 C -0.062 4.062 9 C 0.400 3.600 10 O -0.438 6.438 11 N -0.310 5.310 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.160 4.160 15 C 0.096 3.904 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.145 4.145 19 N -0.442 5.442 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.224 4.224 25 C -0.105 4.105 26 C -0.103 4.103 27 C -0.217 4.217 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.241 -10.580 12.713 21.826 hybrid contribution 0.075 0.953 -0.164 0.970 sum -14.166 -9.627 12.549 21.232 Atomic orbital electron populations 1.23043 0.78542 1.03832 1.01358 1.86081 1.21269 1.26964 1.88899 1.19008 0.92304 0.84071 0.97164 1.20280 0.91272 0.98266 1.05971 1.21095 1.00357 0.90659 0.96439 1.17186 0.90438 0.84204 1.03896 1.44536 1.53318 1.16993 1.18132 1.21785 1.01988 0.94082 0.88321 1.15945 0.79263 0.82055 0.82757 1.90936 1.66876 1.55073 1.30890 1.42252 1.46366 1.20026 1.22397 1.17081 0.93445 1.10724 0.85922 1.20295 0.93375 1.02490 0.98032 1.21176 1.00319 1.03057 0.91477 1.17724 0.90545 0.89257 0.92846 1.19489 1.21685 1.04461 1.03580 0.90641 1.25867 0.95253 0.96338 0.97050 1.69767 1.35302 1.12007 1.27151 0.86203 0.79175 0.79250 0.81352 1.19617 1.20380 1.18732 1.20825 0.96249 1.08484 0.96841 1.20425 0.99515 0.99550 0.91052 1.20974 0.93360 0.97482 0.98523 1.21030 0.99875 0.91765 1.09077 0.92608 0.88338 0.92713 0.84853 0.85107 0.92488 0.90721 0.90893 0.77242 0.89186 0.85020 0.91245 0.88626 0.87393 0.85613 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.38 10.50 -19.66 -0.21 -3.59 16 3 C 0.12 1.40 6.69 -39.23 -0.26 1.13 16 4 C -0.14 -1.71 9.98 -39.46 -0.39 -2.10 16 5 C -0.07 -0.90 9.41 -39.41 -0.37 -1.27 16 6 C 0.13 1.85 4.81 -83.62 -0.40 1.45 16 7 N -0.60 -8.36 2.94 -126.20 -0.37 -8.73 16 8 C 0.08 0.76 10.15 59.84 0.61 1.36 16 9 C 0.70 12.92 7.95 -86.92 -0.69 12.23 16 10 O -0.56 -12.80 13.44 5.29 0.07 -12.73 16 11 N -0.66 -12.03 5.17 -14.10 -0.07 -12.10 16 12 C 0.02 0.47 6.30 -83.57 -0.53 -0.06 16 13 C -0.12 -2.79 9.90 -39.79 -0.39 -3.18 16 14 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 15 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 16 C -0.46 -12.46 9.03 -37.86 -0.34 -12.80 16 17 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 18 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 19 N -0.81 -21.14 10.60 55.55 0.59 -20.56 16 20 Si 0.92 19.17 29.56 -169.99 -5.03 14.15 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.20 -5.27 9.74 -39.26 -0.38 -5.65 16 25 C -0.09 -2.10 8.61 -39.79 -0.34 -2.44 16 26 C -0.08 -0.98 9.81 -39.41 -0.39 -1.36 16 27 C -0.20 -2.10 9.03 -39.45 -0.36 -2.45 16 28 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.07 0.62 6.24 -51.93 -0.32 0.29 16 36 H 0.39 5.64 6.50 -40.82 -0.27 5.37 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 39 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 40 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 41 H 0.11 2.67 6.23 -52.48 -0.33 2.34 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.13 1.02 6.29 -52.49 -0.33 0.69 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -32.48 361.82 -9.13 -41.61 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.29 Total: 10.69 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -4.28 Total: -14.19 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.14 Total: -41.39 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.14 Total: -16.32 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.48 -9.13 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562066534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.288 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds