Wall clock time and date at job start Tue Mar 31 2020 14:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35974 * 116.99748 * 2 1 4 4 C 1.38722 * 119.98762 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01849 * 180.02562 * 4 3 2 6 6 C 1.38838 * 119.98572 * 359.97438 * 5 4 3 7 7 N 1.40137 * 120.01562 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00030 * 245.39694 * 7 6 5 9 9 C 1.34774 * 119.99801 * 65.39710 * 7 6 5 10 10 O 1.21587 * 120.00187 * 4.82109 * 9 7 6 11 11 N 1.34774 * 119.99886 * 184.81217 * 9 7 6 12 12 C 1.39227 * 120.00208 * 175.76008 * 11 9 7 13 13 C 1.39489 * 119.83637 * 215.67617 * 12 11 9 14 14 C 1.36366 * 120.16802 * 180.28608 * 13 12 11 15 15 C 1.40877 * 119.82743 * 359.44377 * 14 13 12 16 16 C 1.41149 * 120.16122 * 180.30418 * 15 14 13 17 17 H 1.07997 * 120.00256 * 145.29108 * 16 15 14 18 18 C 1.39894 * 120.00236 * 325.28287 * 16 15 14 19 19 N 1.30885 * 120.00011 * 4.25658 * 18 16 15 20 20 Si 1.86801 * 120.00055 * 184.25018 * 18 16 15 21 21 H 1.48494 * 109.47077 * 90.00469 * 20 18 16 22 22 H 1.48506 * 109.47124 * 210.00421 * 20 18 16 23 23 H 1.48499 * 109.47031 * 330.00231 * 20 18 16 24 24 C 1.40872 * 119.67129 * 0.28462 * 15 14 13 25 25 C 1.36367 * 119.82936 * 359.97438 * 24 15 14 26 26 C 1.38837 * 119.97157 * 0.25458 * 6 5 4 27 27 C 1.38101 * 119.98309 * 359.51553 * 26 6 5 28 28 H 1.09002 * 109.47366 * 59.99666 * 1 2 3 29 29 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47428 * 299.99464 * 1 2 3 31 31 H 1.08005 * 119.98649 * 0.02981 * 4 3 2 32 32 H 1.08001 * 120.00884 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47219 * 270.00408 * 8 7 6 34 34 H 1.09004 * 109.47166 * 29.99946 * 8 7 6 35 35 H 1.08996 * 109.47017 * 150.00051 * 8 7 6 36 36 H 0.97003 * 120.00032 * 355.76760 * 11 9 7 37 37 H 1.08000 * 119.91396 * 0.02630 * 13 12 11 38 38 H 1.08002 * 120.08865 * 179.72520 * 14 13 12 39 39 H 0.96993 * 120.00198 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.07949 * 180.02562 * 24 15 14 41 41 H 1.08005 * 119.91396 * 180.02562 * 25 24 15 42 42 H 1.08001 * 120.01378 * 179.74450 * 26 6 5 43 43 H 1.07997 * 119.99327 * 180.20596 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0591 2.5140 0.0011 6 6 3.3032 3.6786 0.0005 7 7 3.9394 4.9272 0.0016 8 6 3.7999 5.8193 1.1552 9 6 4.6795 5.3073 -1.0587 10 8 4.7243 4.6066 -2.0513 11 7 5.3697 6.4642 -1.0187 12 6 6.2035 6.8143 -2.0772 13 6 7.3985 7.4886 -1.8258 14 6 8.2174 7.8399 -2.8580 15 6 7.8596 7.5098 -4.1799 16 6 8.7051 7.8644 -5.2531 17 1 8.7901 7.2142 -6.1113 18 6 9.4331 9.0580 -5.2052 19 7 9.3952 9.8050 -4.1311 20 14 10.4593 9.5857 -6.6741 21 1 9.6310 10.4176 -7.5835 22 1 11.6255 10.3764 -6.2049 23 1 10.9375 8.3827 -7.4017 24 6 6.6540 6.8237 -4.4254 25 6 5.8427 6.4837 -3.3834 26 6 1.9167 3.6056 0.0048 27 6 1.2904 2.3747 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 4.0194 0.3779 0.0005 32 1 5.1376 2.5701 0.0019 33 1 2.9333 6.4648 1.0127 34 1 3.6659 5.2257 2.0595 35 1 4.6968 6.4312 1.2518 36 1 5.2857 7.0529 -0.2523 37 1 7.6737 7.7367 -0.8113 38 1 9.1402 8.3659 -2.6621 39 1 9.9002 10.6324 -4.0978 40 1 6.3734 6.5670 -5.4362 41 1 4.9182 5.9574 -3.5700 42 1 1.3281 4.5110 0.0086 43 1 0.2120 2.3178 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562066534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:03 Heat of formation + Delta-G solvation = -13.669912 kcal Electronic energy + Delta-G solvation = -26217.418715 eV Core-core repulsion = 22420.877129 eV Total energy + Delta-G solvation = -3796.541586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95668 -40.90120 -39.52034 -38.36524 -36.25606 -36.15061 -34.59922 -32.15844 -31.50969 -30.99239 -30.16729 -28.17416 -27.68200 -26.57799 -24.00076 -23.63582 -23.10749 -22.34781 -20.93028 -19.53562 -19.22450 -19.07674 -18.19400 -17.46459 -17.36933 -16.92267 -16.61962 -16.35218 -15.75577 -15.58303 -15.41344 -15.01147 -14.67916 -14.53318 -14.46787 -14.08711 -13.99252 -13.79562 -13.60969 -13.58040 -13.24950 -13.18135 -12.84495 -12.82284 -12.62237 -12.34732 -12.01807 -11.89532 -11.86671 -11.61966 -11.19281 -11.02990 -10.54726 -10.14472 -10.04457 -9.46023 -8.99774 -8.69183 -8.49624 -6.30677 0.26644 0.30716 0.83915 1.15143 1.40606 1.47575 1.53801 1.59732 2.10425 2.25820 2.36719 2.67751 2.82098 3.03022 3.69736 3.80512 3.88636 4.13535 4.23734 4.33290 4.39442 4.43377 4.45784 4.50994 4.52719 4.61147 4.75773 4.79641 4.87632 4.92796 4.98052 5.11950 5.14501 5.25523 5.28280 5.41264 5.44679 5.51351 5.65887 5.74115 5.92237 6.04834 6.07161 6.18647 6.40338 6.42443 6.69254 6.94679 6.98707 7.02314 7.57273 8.44057 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.002243 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.934545 B =12482.301939 C =13049.756797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.118 3.882 4 C -0.151 4.151 5 C -0.083 4.083 6 C 0.107 3.893 7 N -0.583 5.583 8 C 0.072 3.928 9 C 0.695 3.305 10 O -0.611 6.611 11 N -0.654 5.654 12 C 0.039 3.961 13 C -0.117 4.117 14 C -0.157 4.157 15 C 0.067 3.933 16 C -0.499 4.499 17 H 0.069 0.931 18 C 0.029 3.971 19 N -0.839 5.839 20 Si 0.988 3.012 21 H -0.266 1.266 22 H -0.265 1.265 23 H -0.262 1.262 24 C -0.220 4.220 25 C -0.096 4.096 26 C -0.081 4.081 27 C -0.192 4.192 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.413 0.587 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.285 0.715 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.145 0.855 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.160 -9.904 14.961 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.073 3.927 4 C -0.170 4.170 5 C -0.103 4.103 6 C 0.016 3.984 7 N -0.317 5.317 8 C -0.069 4.069 9 C 0.397 3.603 10 O -0.490 6.490 11 N -0.304 5.304 12 C -0.055 4.055 13 C -0.137 4.137 14 C -0.177 4.177 15 C 0.065 3.935 16 C -0.530 4.530 17 H 0.087 0.913 18 C -0.183 4.183 19 N -0.467 5.467 20 Si 0.809 3.191 21 H -0.191 1.191 22 H -0.189 1.189 23 H -0.186 1.186 24 C -0.240 4.240 25 C -0.116 4.116 26 C -0.101 4.101 27 C -0.211 4.211 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.253 0.747 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.163 0.837 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.962 -10.352 14.410 23.867 hybrid contribution 0.397 0.723 -0.505 0.967 sum -15.565 -9.629 13.906 22.986 Atomic orbital electron populations 1.23384 0.76265 1.05702 1.02449 1.86072 1.23646 1.26470 1.88596 1.19131 0.92193 0.85019 0.96402 1.20401 0.92231 0.98075 1.06293 1.21070 0.99836 0.91598 0.97752 1.17437 0.91473 0.83833 1.05679 1.44468 1.51757 1.17571 1.17862 1.22138 1.03414 0.94092 0.87284 1.16120 0.79367 0.81542 0.83228 1.90903 1.68497 1.56364 1.33234 1.42010 1.45705 1.20689 1.21988 1.17088 0.93471 1.08565 0.86383 1.20535 0.92697 1.01460 0.99053 1.21165 1.00723 1.03936 0.91871 1.18031 0.91285 0.90428 0.93805 1.19684 1.23591 1.05832 1.03868 0.91273 1.26701 0.95941 0.95655 0.99994 1.69816 1.35775 1.12421 1.28703 0.85117 0.77661 0.78777 0.77554 1.19074 1.18937 1.18647 1.20933 0.96579 1.09154 0.97372 1.20498 0.99310 0.99887 0.91954 1.21178 0.92472 0.98768 0.97641 1.21353 1.01391 0.90829 1.07508 0.91927 0.86309 0.91071 0.84213 0.86617 0.90392 0.88588 0.89902 0.74744 0.85632 0.86149 0.90426 0.88787 0.87807 0.83678 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.48 10.50 -93.25 -0.98 -7.46 16 3 C 0.12 2.58 6.69 22.50 0.15 2.73 16 4 C -0.15 -3.70 9.98 22.35 0.22 -3.48 16 5 C -0.08 -2.29 9.41 22.38 0.21 -2.08 16 6 C 0.11 2.84 4.81 38.10 0.18 3.02 16 7 N -0.58 -15.52 2.94 -671.43 -1.97 -17.49 16 8 C 0.07 1.12 10.15 127.77 1.30 2.42 16 9 C 0.69 25.31 7.95 179.06 1.42 26.73 16 10 O -0.61 -28.26 13.44 -3.99 -0.05 -28.31 16 11 N -0.65 -22.85 5.17 -316.79 -1.64 -24.49 16 12 C 0.04 1.74 6.30 38.57 0.24 1.99 16 13 C -0.12 -5.31 9.90 22.13 0.22 -5.09 16 14 C -0.16 -8.29 8.61 22.48 0.19 -8.10 16 15 C 0.07 3.77 5.55 -21.27 -0.12 3.65 16 16 C -0.50 -27.98 9.03 23.39 0.21 -27.77 16 17 H 0.07 3.80 7.85 -2.91 -0.02 3.77 16 18 C 0.03 1.50 5.42 85.23 0.46 1.96 16 19 N -0.84 -44.10 10.60 21.82 0.23 -43.87 16 20 Si 0.99 39.57 29.56 68.60 2.03 41.60 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 C -0.22 -11.87 9.74 22.48 0.22 -11.66 16 25 C -0.10 -4.84 8.61 22.13 0.19 -4.65 16 26 C -0.08 -1.71 9.81 22.38 0.22 -1.49 16 27 C -0.19 -3.56 9.03 22.35 0.20 -3.36 16 28 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.14 8.05 -2.38 -0.02 1.12 16 35 H 0.08 1.13 6.24 -2.39 -0.01 1.12 16 36 H 0.41 10.81 6.50 -92.71 -0.60 10.20 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 39 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 40 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.10 5.29 6.23 -2.91 -0.02 5.27 16 42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.16 1.90 6.29 -2.91 -0.02 1.89 16 Total: -1.00 -73.42 361.82 4.70 -68.72 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.44 Total: 35.21 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 6.64 Total: -23.90 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.38 Total: -85.85 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.03 Total: -35.77 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -73.42 4.70 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562066534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.047 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds