Wall clock time and date at job start Tue Mar 31 2020 15:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99521 * 2 1 4 4 H 1.48490 * 109.47239 * 269.99716 * 3 2 1 5 5 H 1.48499 * 109.47061 * 30.00244 * 3 2 1 6 6 H 1.48499 * 109.46885 * 149.99898 * 3 2 1 7 7 C 1.37871 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99917 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00268 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97435 * 124.98260 * 10 9 7 12 12 C 1.35242 * 107.86281 * 179.76359 * 11 10 9 13 13 C 1.40410 * 107.86438 * 0.42602 * 12 11 10 14 14 N 1.40156 * 125.97415 * 179.82545 * 13 12 11 15 15 C 1.34782 * 119.99321 * 359.72408 * 14 13 12 16 16 O 1.21285 * 120.00513 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99514 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47015 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.37906 * 304.07009 * 18 17 15 20 20 C 1.53747 * 110.42226 * 66.45782 * 18 17 15 21 21 N 1.46532 * 105.18847 * 118.88450 * 20 18 17 22 22 C 1.39574 * 110.08773 * 359.97438 * 21 20 18 23 23 C 1.39676 * 129.32279 * 180.02562 * 22 21 20 24 24 C 1.37828 * 120.28249 * 179.97438 * 23 22 21 25 25 C 1.38301 * 120.23108 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.83497 * 359.97438 * 25 24 23 27 27 C 1.38172 * 120.14881 * 359.97438 * 26 25 24 28 28 N 1.31223 * 108.05174 * 359.56900 * 13 12 11 29 29 H 0.96993 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46459 * 59.99508 * 9 7 2 31 31 H 1.08997 * 109.46601 * 299.99941 * 9 7 2 32 32 H 1.08005 * 126.06883 * 0.03237 * 11 10 9 33 33 H 1.07994 * 126.06448 * 180.28193 * 12 11 10 34 34 H 0.96999 * 120.00527 * 179.71983 * 14 13 12 35 35 H 1.09003 * 109.47121 * 59.99648 * 17 15 14 36 36 H 1.09004 * 109.47428 * 300.00401 * 17 15 14 37 37 H 1.08998 * 110.29878 * 359.95020 * 20 18 17 38 38 H 1.09002 * 110.37759 * 237.85794 * 20 18 17 39 39 H 0.96997 * 124.95386 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.85989 * 359.95544 * 23 22 21 41 41 H 1.07993 * 119.88552 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.08617 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.92782 * 179.72026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5117 -1.1939 0.0000 10 7 4.0000 -2.5751 -0.0001 11 6 4.8551 -3.1136 -0.8948 12 6 5.0603 -4.4045 -0.5475 13 6 4.2938 -4.6692 0.5988 14 7 4.2221 -5.8939 1.2765 15 6 4.9274 -6.9527 0.8312 16 8 5.6236 -6.8458 -0.1561 17 6 4.8508 -8.2694 1.5602 18 6 5.7382 -9.2960 0.8535 19 1 5.4529 -9.3868 -0.1946 20 6 7.2186 -8.8989 0.9742 21 7 7.8541 -10.0024 1.6992 22 6 6.9084 -10.9819 2.0063 23 6 7.0753 -12.1919 2.6838 24 6 5.9993 -13.0288 2.8870 25 6 4.7456 -12.6769 2.4209 26 6 4.5722 -11.4811 1.7495 27 6 5.6477 -10.6382 1.5443 28 7 3.6607 -3.5679 0.9278 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6806 0.8905 31 1 3.8752 -0.6795 -0.8895 32 1 5.3002 -2.6030 -1.7360 33 1 5.6984 -5.1075 -1.0620 34 1 3.6651 -5.9796 2.0660 35 1 3.8196 -8.6228 1.5647 36 1 5.1938 -8.1372 2.5864 37 1 7.3164 -7.9706 1.5369 38 1 7.6641 -8.7897 -0.0146 39 1 8.7948 -10.0458 1.9317 40 1 8.0518 -12.4730 3.0497 41 1 6.1355 -13.9627 3.4120 42 1 3.9041 -13.3347 2.5811 43 1 3.5948 -11.2069 1.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:29 Heat of formation + Delta-G solvation = 86.407855 kcal Electronic energy + Delta-G solvation = -25900.482341 eV Core-core repulsion = 22140.573204 eV Total energy + Delta-G solvation = -3759.909138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03719 -40.54331 -39.21649 -36.53582 -34.82417 -33.46955 -33.21468 -31.36468 -30.21907 -29.45210 -29.42703 -27.54759 -26.49643 -23.27484 -22.86608 -22.10872 -21.66607 -20.73260 -19.97562 -19.57482 -17.70068 -17.11997 -17.04877 -16.55812 -16.08786 -15.81944 -15.61090 -15.39461 -14.94536 -14.47607 -14.12907 -13.94100 -13.83706 -13.54127 -13.18068 -13.02792 -12.75746 -12.70544 -12.53897 -12.35921 -12.15962 -12.08215 -11.74886 -11.42522 -11.16095 -10.99537 -10.78922 -10.66617 -10.33641 -10.08168 -10.02028 -9.66650 -9.54177 -8.99116 -8.78379 -8.22469 -7.56272 -7.56025 -6.25158 -4.27634 1.19152 1.40512 2.25650 2.69442 2.83414 3.14084 3.19162 3.20909 3.22787 3.61557 3.64580 3.76397 4.21220 4.31252 4.34270 4.60600 4.76563 4.87725 4.89123 5.02397 5.04773 5.25279 5.27180 5.30831 5.38581 5.42295 5.54921 5.62019 5.67173 5.80645 5.90511 6.15834 6.17019 6.32152 6.35381 6.40916 6.41286 6.49219 6.54157 6.63554 6.97730 7.22482 7.32895 7.53367 7.58781 7.78584 8.19070 8.31556 8.53712 8.84351 9.29641 10.87497 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.002033 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.704267 B =13771.279992 C =14325.411375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.050 3.950 12 C -0.283 4.283 13 C 0.259 3.741 14 N -0.631 5.631 15 C 0.518 3.482 16 O -0.518 6.518 17 C -0.125 4.125 18 C -0.031 4.031 19 H 0.100 0.900 20 C 0.129 3.871 21 N -0.747 5.747 22 C 0.201 3.799 23 C -0.187 4.187 24 C -0.074 4.074 25 C -0.178 4.178 26 C -0.056 4.056 27 C -0.171 4.171 28 N -0.297 5.297 29 H 0.268 0.732 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.412 0.588 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.455 -22.608 4.618 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.279 5.279 15 C 0.305 3.695 16 O -0.392 6.392 17 C -0.166 4.166 18 C -0.050 4.050 19 H 0.118 0.882 20 C 0.005 3.995 21 N -0.379 5.379 22 C 0.097 3.903 23 C -0.210 4.210 24 C -0.092 4.092 25 C -0.198 4.198 26 C -0.075 4.075 27 C -0.176 4.176 28 N -0.128 5.128 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.247 0.753 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.248 0.752 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.975 -21.570 4.650 26.119 hybrid contribution 0.874 0.638 -0.046 1.083 sum 14.849 -20.933 4.604 26.074 Atomic orbital electron populations 1.69871 1.06146 1.27317 1.49101 1.24838 0.94883 0.98810 0.94263 0.86901 0.80421 0.83833 0.78918 1.19707 1.20517 1.18888 1.21102 0.87762 0.95706 1.52704 0.89650 1.20050 0.97484 0.72996 0.98194 1.48618 1.32468 1.10274 1.18681 1.22571 0.95917 0.94762 0.96678 1.21538 1.11354 0.96803 1.01759 1.19148 0.98853 0.86722 0.94735 1.42546 1.47346 1.07502 1.30489 1.20668 0.79108 0.84839 0.84922 1.90636 1.39258 1.83662 1.25633 1.21729 1.02970 0.91296 1.00582 1.20297 0.94166 0.90211 1.00313 0.88226 1.21837 0.91722 0.89172 0.96801 1.44889 1.09400 1.20136 1.63472 1.18388 0.89360 0.89544 0.93005 1.20319 0.99685 0.94487 1.06484 1.20762 0.92362 0.98378 0.97741 1.20823 0.97419 0.97876 1.03647 1.20377 0.97411 0.93048 0.96656 1.19818 0.93446 0.97786 1.06533 1.77398 1.23752 0.95634 1.15993 0.92162 0.94037 0.93324 0.81420 0.82070 0.75250 0.87861 0.88281 0.91437 0.90750 0.75240 0.86726 0.86191 0.86174 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 7 C -0.53 -14.99 9.79 -34.44 -0.34 -15.33 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 C 0.23 5.44 5.33 -5.19 -0.03 5.41 16 10 N -0.32 -7.12 3.67 -62.56 -0.23 -7.35 16 11 C 0.05 0.95 11.44 -17.24 -0.20 0.75 16 12 C -0.28 -5.31 9.61 -39.83 -0.38 -5.69 16 13 C 0.26 4.98 8.11 -154.39 -1.25 3.73 16 14 N -0.63 -9.11 5.45 -11.13 -0.06 -9.17 16 15 C 0.52 6.57 7.34 -10.98 -0.08 6.49 16 16 O -0.52 -7.86 12.24 5.55 0.07 -7.79 16 17 C -0.13 -1.10 5.05 -27.88 -0.14 -1.24 16 18 C -0.03 -0.29 2.66 -91.13 -0.24 -0.53 16 19 H 0.10 1.01 8.01 -51.93 -0.42 0.60 16 20 C 0.13 1.21 6.50 -3.64 -0.02 1.18 16 21 N -0.75 -6.35 6.53 -58.12 -0.38 -6.73 16 22 C 0.20 1.91 7.03 -83.66 -0.59 1.32 16 23 C -0.19 -1.59 10.07 -39.19 -0.39 -1.99 16 24 C -0.07 -0.58 10.02 -39.71 -0.40 -0.98 16 25 C -0.18 -1.42 10.06 -39.56 -0.40 -1.82 16 26 C -0.06 -0.48 10.04 -39.61 -0.40 -0.88 16 27 C -0.17 -1.62 5.55 -104.25 -0.58 -2.20 16 28 N -0.30 -6.69 12.42 31.44 0.39 -6.30 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 31 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 32 H 0.17 2.49 8.06 -52.48 -0.42 2.07 16 33 H 0.16 2.88 5.92 -52.49 -0.31 2.57 16 34 H 0.41 4.87 8.82 -40.82 -0.36 4.51 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.66 7.38 -51.93 -0.38 0.28 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.41 2.66 8.96 -40.82 -0.37 2.29 16 40 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -34.00 361.42 -9.77 -43.77 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.57 Total: 8.23 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -5.54 Total: -9.74 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.49 Total: -55.24 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.00 -9.77 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.174 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds