Wall clock time and date at job start Tue Mar 31 2020 15:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99521 * 2 1 4 4 H 1.48490 * 109.47239 * 269.99716 * 3 2 1 5 5 H 1.48499 * 109.47061 * 30.00244 * 3 2 1 6 6 H 1.48499 * 109.46885 * 149.99898 * 3 2 1 7 7 C 1.37871 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99917 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00268 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97435 * 124.98260 * 10 9 7 12 12 C 1.35242 * 107.86281 * 179.76359 * 11 10 9 13 13 C 1.40410 * 107.86438 * 0.42602 * 12 11 10 14 14 N 1.40156 * 125.97415 * 179.82545 * 13 12 11 15 15 C 1.34782 * 119.99321 * 359.72408 * 14 13 12 16 16 O 1.21285 * 120.00513 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99514 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47015 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.37906 * 304.07009 * 18 17 15 20 20 C 1.53747 * 110.42226 * 66.45782 * 18 17 15 21 21 N 1.46532 * 105.18847 * 118.88450 * 20 18 17 22 22 C 1.39574 * 110.08773 * 359.97438 * 21 20 18 23 23 C 1.39676 * 129.32279 * 180.02562 * 22 21 20 24 24 C 1.37828 * 120.28249 * 179.97438 * 23 22 21 25 25 C 1.38301 * 120.23108 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.83497 * 359.97438 * 25 24 23 27 27 C 1.38172 * 120.14881 * 359.97438 * 26 25 24 28 28 N 1.31223 * 108.05174 * 359.56900 * 13 12 11 29 29 H 0.96993 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46459 * 59.99508 * 9 7 2 31 31 H 1.08997 * 109.46601 * 299.99941 * 9 7 2 32 32 H 1.08005 * 126.06883 * 0.03237 * 11 10 9 33 33 H 1.07994 * 126.06448 * 180.28193 * 12 11 10 34 34 H 0.96999 * 120.00527 * 179.71983 * 14 13 12 35 35 H 1.09003 * 109.47121 * 59.99648 * 17 15 14 36 36 H 1.09004 * 109.47428 * 300.00401 * 17 15 14 37 37 H 1.08998 * 110.29878 * 359.95020 * 20 18 17 38 38 H 1.09002 * 110.37759 * 237.85794 * 20 18 17 39 39 H 0.96997 * 124.95386 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.85989 * 359.95544 * 23 22 21 41 41 H 1.07993 * 119.88552 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.08617 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.92782 * 179.72026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5117 -1.1939 0.0000 10 7 4.0000 -2.5751 -0.0001 11 6 4.8551 -3.1136 -0.8948 12 6 5.0603 -4.4045 -0.5475 13 6 4.2938 -4.6692 0.5988 14 7 4.2221 -5.8939 1.2765 15 6 4.9274 -6.9527 0.8312 16 8 5.6236 -6.8458 -0.1561 17 6 4.8508 -8.2694 1.5602 18 6 5.7382 -9.2960 0.8535 19 1 5.4529 -9.3868 -0.1946 20 6 7.2186 -8.8989 0.9742 21 7 7.8541 -10.0024 1.6992 22 6 6.9084 -10.9819 2.0063 23 6 7.0753 -12.1919 2.6838 24 6 5.9993 -13.0288 2.8870 25 6 4.7456 -12.6769 2.4209 26 6 4.5722 -11.4811 1.7495 27 6 5.6477 -10.6382 1.5443 28 7 3.6607 -3.5679 0.9278 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6806 0.8905 31 1 3.8752 -0.6795 -0.8895 32 1 5.3002 -2.6030 -1.7360 33 1 5.6984 -5.1075 -1.0620 34 1 3.6651 -5.9796 2.0660 35 1 3.8196 -8.6228 1.5647 36 1 5.1938 -8.1372 2.5864 37 1 7.3164 -7.9706 1.5369 38 1 7.6641 -8.7897 -0.0146 39 1 8.7948 -10.0458 1.9317 40 1 8.0518 -12.4730 3.0497 41 1 6.1355 -13.9627 3.4120 42 1 3.9041 -13.3347 2.5811 43 1 3.5948 -11.2069 1.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:29 Heat of formation + Delta-G solvation = 63.924044 kcal Electronic energy + Delta-G solvation = -25901.457312 eV Core-core repulsion = 22140.573204 eV Total energy + Delta-G solvation = -3760.884109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.26032 -41.51680 -40.31511 -37.21270 -36.18873 -35.18400 -34.14288 -33.07795 -31.07369 -30.86896 -30.08506 -29.09828 -27.55390 -24.66132 -23.84127 -23.20264 -22.53167 -21.92178 -21.20358 -20.76426 -19.10839 -18.38564 -18.27619 -17.83920 -17.16674 -16.86603 -16.50135 -16.28064 -16.19411 -15.96346 -15.28644 -15.01448 -14.80796 -14.65507 -14.41875 -14.34486 -13.99362 -13.82321 -13.69629 -13.43704 -13.37606 -12.98209 -12.79841 -12.53029 -12.40406 -12.29866 -12.09903 -11.83360 -11.62596 -11.59002 -11.43041 -10.99108 -10.87283 -10.82905 -9.75637 -9.62850 -9.09068 -8.37733 -8.21889 -6.48013 0.55843 0.76948 0.95209 1.33311 1.36475 1.42748 1.48554 1.50775 2.25087 2.28715 2.37648 2.55221 2.94702 3.00036 3.46004 3.64960 3.86461 3.87404 4.05185 4.22056 4.24425 4.33244 4.36410 4.58896 4.60556 4.62149 4.65931 4.78445 4.79822 4.85410 4.89549 4.90892 4.92015 5.13440 5.19264 5.24416 5.24816 5.53669 5.70046 5.80093 5.87228 5.90781 6.01709 6.25296 6.34905 6.41553 6.57961 6.99882 7.00941 7.13453 7.15221 8.79293 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.002033 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.704267 B =13771.279992 C =14325.411375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.057 3.943 12 C -0.293 4.293 13 C 0.265 3.735 14 N -0.629 5.629 15 C 0.521 3.479 16 O -0.541 6.541 17 C -0.112 4.112 18 C -0.028 4.028 19 H 0.089 0.911 20 C 0.130 3.870 21 N -0.745 5.745 22 C 0.184 3.816 23 C -0.196 4.196 24 C -0.078 4.078 25 C -0.183 4.183 26 C -0.065 4.065 27 C -0.185 4.185 28 N -0.351 5.351 29 H 0.272 0.728 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.209 0.791 33 H 0.171 0.829 34 H 0.423 0.577 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.418 0.582 40 H 0.127 0.873 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.357 -22.986 4.829 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.163 1.163 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.119 3.881 10 N -0.127 5.127 11 C -0.090 4.090 12 C -0.324 4.324 13 C 0.010 3.990 14 N -0.278 5.278 15 C 0.310 3.690 16 O -0.416 6.416 17 C -0.151 4.151 18 C -0.047 4.047 19 H 0.107 0.893 20 C 0.006 3.994 21 N -0.378 5.378 22 C 0.080 3.920 23 C -0.218 4.218 24 C -0.096 4.096 25 C -0.203 4.203 26 C -0.083 4.083 27 C -0.190 4.190 28 N -0.181 5.181 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.226 0.774 33 H 0.189 0.811 34 H 0.261 0.739 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.257 0.743 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.903 -22.005 4.873 27.584 hybrid contribution 0.262 0.509 -0.114 0.584 sum 16.165 -21.496 4.759 27.313 Atomic orbital electron populations 1.70050 1.08546 1.28800 1.50659 1.25935 0.95795 1.03570 0.93263 0.85607 0.79472 0.77194 0.80046 1.17752 1.20638 1.16284 1.21227 0.90506 0.93707 1.52997 0.95557 1.19874 0.94159 0.74463 0.99565 1.48498 1.34119 1.10092 1.20031 1.23271 0.94340 0.94877 0.96551 1.21776 1.11615 0.97145 1.01817 1.19561 0.97306 0.87397 0.94715 1.42767 1.47962 1.06340 1.30770 1.21407 0.77789 0.85293 0.84548 1.90616 1.40097 1.84045 1.26853 1.21728 1.04335 0.88494 1.00576 1.20231 0.94128 0.90594 0.99791 0.89325 1.21747 0.91977 0.89292 0.96431 1.44844 1.09793 1.19758 1.63401 1.18627 0.89608 0.90162 0.93649 1.20575 1.00671 0.94259 1.06334 1.21096 0.92104 0.99043 0.97366 1.21130 0.98196 0.97895 1.03118 1.20624 0.97822 0.93214 0.96673 1.19894 0.93945 0.97909 1.07217 1.77311 1.26088 0.96960 1.17778 0.91884 0.93738 0.90115 0.77424 0.81142 0.73924 0.85643 0.86575 0.91942 0.91533 0.74318 0.85460 0.84023 0.84400 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 2 C 0.01 0.74 5.47 84.65 0.46 1.21 16 3 Si 0.96 40.60 27.47 68.60 1.88 42.48 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 7 C -0.55 -31.50 9.79 25.60 0.25 -31.25 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.24 11.04 5.33 85.64 0.46 11.50 16 10 N -0.35 -15.39 3.67 -351.84 -1.29 -16.68 16 11 C 0.06 2.09 11.44 83.52 0.96 3.04 16 12 C -0.29 -10.75 9.61 22.11 0.21 -10.54 16 13 C 0.27 10.22 8.11 133.32 1.08 11.30 16 14 N -0.63 -17.90 5.45 -307.51 -1.68 -19.57 16 15 C 0.52 12.75 7.34 87.66 0.64 13.40 16 16 O -0.54 -16.11 12.24 -3.04 -0.04 -16.15 16 17 C -0.11 -1.78 5.05 29.85 0.15 -1.63 16 18 C -0.03 -0.51 2.66 -11.12 -0.03 -0.54 16 19 H 0.09 1.77 8.01 -2.39 -0.02 1.75 16 20 C 0.13 2.37 6.50 86.62 0.56 2.94 16 21 N -0.74 -12.06 6.53 -337.79 -2.20 -14.26 16 22 C 0.18 3.27 7.03 38.34 0.27 3.54 16 23 C -0.20 -3.02 10.07 22.52 0.23 -2.79 16 24 C -0.08 -1.05 10.02 22.19 0.22 -0.83 16 25 C -0.18 -2.55 10.06 22.28 0.22 -2.32 16 26 C -0.06 -1.00 10.04 22.25 0.22 -0.78 16 27 C -0.18 -3.27 5.55 -19.63 -0.11 -3.38 16 28 N -0.35 -16.13 12.42 -54.45 -0.68 -16.80 16 29 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 30 H 0.04 2.02 7.20 -2.39 -0.02 2.00 16 31 H 0.08 3.20 7.50 -2.39 -0.02 3.18 16 32 H 0.21 5.53 8.06 -2.91 -0.02 5.51 16 33 H 0.17 5.92 5.92 -2.91 -0.02 5.91 16 34 H 0.42 9.83 8.82 -92.71 -0.82 9.01 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.06 1.19 7.38 -2.39 -0.02 1.17 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.42 5.10 8.96 -92.71 -0.83 4.27 16 40 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -77.14 361.42 1.46 -75.68 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.64 Total: 30.09 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.80 Total: -7.13 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -5.55 Total: -124.97 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.04 Total: -16.15 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.48 kcal Total: -77.14 1.46 -75.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.603 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds