Wall clock time and date at job start Tue Mar 31 2020 14:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35907 * 116.99983 * 2 1 4 4 C 1.38805 * 120.43637 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.83463 * 180.02562 * 4 3 2 6 6 C 1.31812 * 121.85160 * 359.97438 * 5 4 3 7 7 C 1.38885 * 120.78288 * 0.02562 * 6 5 4 8 8 N 1.39954 * 120.45400 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99805 * 145.30871 * 8 7 6 10 10 O 1.21285 * 119.99885 * 4.76287 * 9 8 7 11 11 C 1.50697 * 119.99801 * 184.75647 * 9 8 7 12 12 C 1.52997 * 109.47152 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47446 * 306.43908 * 12 11 9 14 14 C 1.50703 * 109.47199 * 66.43545 * 12 11 9 15 15 H 1.08000 * 119.99837 * 30.86089 * 14 12 11 16 16 C 1.37874 * 120.00354 * 210.86518 * 14 12 11 17 17 N 1.31510 * 120.00234 * 188.68885 * 16 14 12 18 18 Si 1.86803 * 119.99678 * 8.69019 * 16 14 12 19 19 H 1.48505 * 109.46992 * 94.05365 * 18 16 14 20 20 H 1.48508 * 109.47003 * 214.05029 * 18 16 14 21 21 H 1.48496 * 109.47251 * 334.04939 * 18 16 14 22 22 C 1.50699 * 109.47406 * 186.43649 * 12 11 9 23 23 C 1.38239 * 119.99703 * 299.39886 * 22 12 11 24 24 C 1.38232 * 119.99609 * 179.78467 * 23 22 12 25 25 C 1.38234 * 120.00607 * 0.44637 * 24 23 22 26 26 C 1.38245 * 119.99302 * 359.80627 * 25 24 23 27 27 C 1.38230 * 120.00147 * 119.67092 * 22 12 11 28 28 C 1.38963 * 120.43729 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47384 * 300.00221 * 1 2 3 31 31 H 1.08999 * 109.46837 * 60.00348 * 1 2 3 32 32 H 1.07996 * 119.58481 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.60920 * 179.97438 * 6 5 4 34 34 H 0.96996 * 119.99772 * 325.30798 * 8 7 6 35 35 H 1.09001 * 109.47170 * 300.00211 * 11 9 8 36 36 H 1.09000 * 109.47307 * 60.00349 * 11 9 8 37 37 H 0.97008 * 120.00177 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.00031 * 359.97438 * 23 22 12 39 39 H 1.08006 * 120.00183 * 180.27107 * 24 23 22 40 40 H 1.07994 * 120.00774 * 179.83014 * 25 24 23 41 41 H 1.08003 * 119.99537 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.00053 * 359.97438 * 27 22 12 43 43 H 1.08002 * 120.84162 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2989 2.3808 -0.0005 5 7 1.8892 3.5594 -0.0010 6 6 3.2018 3.6800 -0.0006 7 6 4.0188 2.5569 0.0000 8 7 5.4117 2.6929 -0.0001 9 6 6.1756 1.8036 0.6647 10 8 5.6638 0.8377 1.1902 11 6 7.6658 2.0092 0.7549 12 6 8.2908 0.8657 1.5565 13 1 7.7853 0.7774 2.5182 14 6 8.1429 -0.4240 0.7910 15 1 8.1355 -0.4131 -0.2889 16 6 8.0169 -1.6177 1.4693 17 7 8.0596 -2.7556 0.8113 18 14 7.7855 -1.6188 3.3229 19 1 6.3357 -1.6700 3.6408 20 1 8.4622 -2.8054 3.9056 21 1 8.3745 -0.3820 3.8960 22 6 9.7532 1.1510 1.7821 23 6 10.6045 1.2922 0.7021 24 6 11.9451 1.5583 0.9089 25 6 12.4363 1.6742 2.1958 26 6 11.5860 1.5278 3.2759 27 6 10.2445 1.2660 3.0690 28 6 3.4332 1.2943 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2204 2.3247 -0.0005 33 1 3.6472 4.6639 -0.0014 34 1 5.8272 3.4273 -0.4785 35 1 8.0918 2.0245 -0.2483 36 1 7.8724 2.9571 1.2518 37 1 7.9713 -3.5955 1.2886 38 1 10.2215 1.1976 -0.3033 39 1 12.6094 1.6730 0.0651 40 1 13.4842 1.8793 2.3575 41 1 11.9697 1.6186 4.2814 42 1 9.5803 1.1517 3.9129 43 1 4.0415 0.4018 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596307915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:19 Heat of formation + Delta-G solvation = -5.251894 kcal Electronic energy + Delta-G solvation = -26904.469783 eV Core-core repulsion = 23108.293229 eV Total energy + Delta-G solvation = -3796.176554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85188 -39.49056 -38.56865 -37.87641 -34.90255 -34.07934 -31.85711 -31.48722 -30.25304 -29.95871 -28.75292 -27.51939 -26.02593 -23.83688 -23.03229 -22.30282 -21.86416 -20.40564 -19.37973 -18.38582 -17.32343 -17.04307 -16.82602 -16.33955 -15.99834 -15.84476 -15.73952 -14.75079 -14.69408 -14.22434 -14.06599 -13.90883 -13.55026 -13.32856 -12.95995 -12.79869 -12.64747 -12.56606 -12.42123 -12.06604 -11.98179 -11.88164 -11.58916 -11.19191 -10.83819 -10.63041 -10.60222 -10.41445 -9.97645 -9.80754 -9.55493 -9.28565 -9.07424 -8.67016 -8.43941 -8.23437 -8.13433 -7.85095 -6.04804 -4.01722 1.09920 1.37468 2.07244 2.11824 2.97981 3.12841 3.37452 3.41293 3.44537 3.48961 3.85786 4.48473 4.51132 4.53613 4.68790 4.91050 5.00574 5.04650 5.12185 5.15579 5.31230 5.37617 5.49576 5.52591 5.55788 5.65791 5.82183 5.87476 6.00491 6.03354 6.10351 6.20493 6.27965 6.33132 6.50164 6.65932 6.78949 6.81697 6.96526 7.12163 7.22828 7.24378 7.53668 7.61763 7.67295 7.77833 7.92546 8.45665 8.62119 8.94745 9.60112 11.07649 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003555 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.660978 B = 7875.360037 C = 9040.567137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.098 3.902 4 C -0.014 4.014 5 N -0.434 5.434 6 C 0.029 3.971 7 C 0.152 3.848 8 N -0.683 5.683 9 C 0.513 3.487 10 O -0.477 6.477 11 C -0.115 4.115 12 C 0.053 3.947 13 H 0.053 0.947 14 C -0.493 4.493 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.894 5.894 18 Si 0.870 3.130 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.256 1.256 22 C -0.038 4.038 23 C -0.103 4.103 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.118 4.118 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.411 0.589 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 12.744 -1.665 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.050 3.950 4 C -0.173 4.173 5 N -0.143 5.143 6 C -0.132 4.132 7 C 0.054 3.946 8 N -0.330 5.330 9 C 0.301 3.699 10 O -0.346 6.346 11 C -0.155 4.155 12 C 0.034 3.966 13 H 0.071 0.929 14 C -0.529 4.529 15 H 0.090 0.910 16 C -0.117 4.117 17 N -0.531 5.531 18 Si 0.698 3.302 19 H -0.202 1.202 20 H -0.221 1.221 21 H -0.181 1.181 22 C -0.038 4.038 23 C -0.122 4.122 24 C -0.145 4.145 25 C -0.168 4.168 26 C -0.144 4.144 27 C -0.156 4.156 28 C -0.147 4.147 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.247 0.753 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.356 12.312 -1.221 14.394 hybrid contribution 0.416 -0.634 0.729 1.052 sum -6.940 11.678 -0.492 13.593 Atomic orbital electron populations 1.23103 0.78294 1.04258 1.01332 1.86156 1.21327 1.26064 1.88267 1.19945 0.92681 0.85569 0.96784 1.22716 1.00246 0.87209 1.07124 1.67420 1.11117 1.26262 1.09491 1.22426 0.88735 0.97584 1.04473 1.18591 0.84829 0.93533 0.97650 1.43852 1.03322 1.32080 1.53755 1.21227 0.90034 0.81531 0.77115 1.90754 1.73804 1.26667 1.43372 1.21705 0.89567 1.00881 1.03383 1.18194 0.87192 0.93883 0.97351 0.92884 1.20581 1.50053 0.88335 0.93979 0.91025 1.24887 0.93532 0.95363 0.97946 1.69907 1.49390 0.97522 1.36284 0.86968 0.78724 0.77615 0.86864 1.20223 1.22082 1.18061 1.20690 0.98732 0.92320 0.92094 1.20943 0.92751 0.99265 0.99195 1.21046 0.95743 1.01272 0.96414 1.20868 0.98752 1.04056 0.93074 1.20979 0.93986 1.01340 0.98062 1.21194 0.95337 1.01849 0.97177 1.21201 0.91970 0.99296 1.02205 0.88000 0.92503 0.92516 0.82776 0.82528 0.75323 0.89132 0.90636 0.92764 0.86337 0.87187 0.87418 0.87368 0.86847 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.22 16 2 O -0.31 -4.48 10.51 -19.45 -0.20 -4.68 16 3 C 0.10 1.50 6.71 -39.10 -0.26 1.24 16 4 C -0.01 -0.19 10.22 -17.35 -0.18 -0.37 16 5 N -0.43 -6.03 10.35 -12.96 -0.13 -6.16 16 6 C 0.03 0.38 11.12 -17.32 -0.19 0.19 16 7 C 0.15 2.27 6.32 -83.56 -0.53 1.74 16 8 N -0.68 -9.40 5.35 -9.78 -0.05 -9.45 16 9 C 0.51 9.26 7.45 -10.99 -0.08 9.18 16 10 O -0.48 -10.93 12.49 5.55 0.07 -10.86 16 11 C -0.12 -1.96 4.88 -27.89 -0.14 -2.09 16 12 C 0.05 1.15 1.21 -92.92 -0.11 1.04 16 13 H 0.05 1.24 4.67 -51.93 -0.24 1.00 16 14 C -0.49 -13.03 7.13 -34.44 -0.25 -13.27 16 15 H 0.07 2.05 8.06 -52.49 -0.42 1.62 16 16 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 17 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 18 Si 0.87 22.29 27.35 -169.99 -4.65 17.64 16 19 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.26 -6.00 4.29 56.52 0.24 -5.75 16 22 C -0.04 -0.76 4.75 -104.62 -0.50 -1.26 16 23 C -0.10 -1.93 8.87 -39.58 -0.35 -2.28 16 24 C -0.13 -2.09 10.05 -39.59 -0.40 -2.49 16 25 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 26 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 27 C -0.14 -2.64 9.16 -39.59 -0.36 -3.01 16 28 C -0.12 -2.04 8.76 -38.96 -0.34 -2.38 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 31 H 0.06 0.41 7.68 -51.93 -0.40 0.02 16 32 H 0.16 1.56 6.31 -52.49 -0.33 1.23 16 33 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.41 3.91 8.83 -40.82 -0.36 3.55 16 35 H 0.09 1.40 7.65 -51.93 -0.40 1.01 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.12 2.14 7.69 -52.48 -0.40 1.74 16 39 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 42 H 0.11 2.17 6.52 -52.49 -0.34 1.83 16 43 H 0.16 3.36 6.29 -52.49 -0.33 3.03 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -34.58 358.71 -7.84 -42.41 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.46 Total: 7.80 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.59 Total: -15.46 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.59 Total: -42.25 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.13 Total: -15.54 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.65 Total: 17.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.58 -7.84 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596307915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.161 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds