Wall clock time and date at job start Tue Mar 31 2020 14:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35907 * 116.99983 * 2 1 4 4 C 1.38805 * 120.43637 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.83463 * 180.02562 * 4 3 2 6 6 C 1.31812 * 121.85160 * 359.97438 * 5 4 3 7 7 C 1.38885 * 120.78288 * 0.02562 * 6 5 4 8 8 N 1.39954 * 120.45400 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99805 * 145.30871 * 8 7 6 10 10 O 1.21285 * 119.99885 * 4.76287 * 9 8 7 11 11 C 1.50697 * 119.99801 * 184.75647 * 9 8 7 12 12 C 1.52997 * 109.47152 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47446 * 306.43908 * 12 11 9 14 14 C 1.50703 * 109.47199 * 66.43545 * 12 11 9 15 15 H 1.08000 * 119.99837 * 30.86089 * 14 12 11 16 16 C 1.37874 * 120.00354 * 210.86518 * 14 12 11 17 17 N 1.31510 * 120.00234 * 188.68885 * 16 14 12 18 18 Si 1.86803 * 119.99678 * 8.69019 * 16 14 12 19 19 H 1.48505 * 109.46992 * 94.05365 * 18 16 14 20 20 H 1.48508 * 109.47003 * 214.05029 * 18 16 14 21 21 H 1.48496 * 109.47251 * 334.04939 * 18 16 14 22 22 C 1.50699 * 109.47406 * 186.43649 * 12 11 9 23 23 C 1.38239 * 119.99703 * 299.39886 * 22 12 11 24 24 C 1.38232 * 119.99609 * 179.78467 * 23 22 12 25 25 C 1.38234 * 120.00607 * 0.44637 * 24 23 22 26 26 C 1.38245 * 119.99302 * 359.80627 * 25 24 23 27 27 C 1.38230 * 120.00147 * 119.67092 * 22 12 11 28 28 C 1.38963 * 120.43729 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47384 * 300.00221 * 1 2 3 31 31 H 1.08999 * 109.46837 * 60.00348 * 1 2 3 32 32 H 1.07996 * 119.58481 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.60920 * 179.97438 * 6 5 4 34 34 H 0.96996 * 119.99772 * 325.30798 * 8 7 6 35 35 H 1.09001 * 109.47170 * 300.00211 * 11 9 8 36 36 H 1.09000 * 109.47307 * 60.00349 * 11 9 8 37 37 H 0.97008 * 120.00177 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.00031 * 359.97438 * 23 22 12 39 39 H 1.08006 * 120.00183 * 180.27107 * 24 23 22 40 40 H 1.07994 * 120.00774 * 179.83014 * 25 24 23 41 41 H 1.08003 * 119.99537 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.00053 * 359.97438 * 27 22 12 43 43 H 1.08002 * 120.84162 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2989 2.3808 -0.0005 5 7 1.8892 3.5594 -0.0010 6 6 3.2018 3.6800 -0.0006 7 6 4.0188 2.5569 0.0000 8 7 5.4117 2.6929 -0.0001 9 6 6.1756 1.8036 0.6647 10 8 5.6638 0.8377 1.1902 11 6 7.6658 2.0092 0.7549 12 6 8.2908 0.8657 1.5565 13 1 7.7853 0.7774 2.5182 14 6 8.1429 -0.4240 0.7910 15 1 8.1355 -0.4131 -0.2889 16 6 8.0169 -1.6177 1.4693 17 7 8.0596 -2.7556 0.8113 18 14 7.7855 -1.6188 3.3229 19 1 6.3357 -1.6700 3.6408 20 1 8.4622 -2.8054 3.9056 21 1 8.3745 -0.3820 3.8960 22 6 9.7532 1.1510 1.7821 23 6 10.6045 1.2922 0.7021 24 6 11.9451 1.5583 0.9089 25 6 12.4363 1.6742 2.1958 26 6 11.5860 1.5278 3.2759 27 6 10.2445 1.2660 3.0690 28 6 3.4332 1.2943 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2204 2.3247 -0.0005 33 1 3.6472 4.6639 -0.0014 34 1 5.8272 3.4273 -0.4785 35 1 8.0918 2.0245 -0.2483 36 1 7.8724 2.9571 1.2518 37 1 7.9713 -3.5955 1.2886 38 1 10.2215 1.1976 -0.3033 39 1 12.6094 1.6730 0.0651 40 1 13.4842 1.8793 2.3575 41 1 11.9697 1.6186 4.2814 42 1 9.5803 1.1517 3.9129 43 1 4.0415 0.4018 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596307915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:19 Heat of formation + Delta-G solvation = -29.187454 kcal Electronic energy + Delta-G solvation = -26905.507706 eV Core-core repulsion = 23108.293229 eV Total energy + Delta-G solvation = -3797.214477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01985 -40.81142 -39.91453 -39.01451 -36.28731 -35.68726 -33.78994 -32.71749 -31.60140 -31.17329 -30.06999 -28.41298 -27.75432 -25.10658 -24.46439 -23.57619 -23.20864 -21.75503 -20.89998 -19.52839 -19.05887 -18.55185 -17.92908 -17.62582 -17.18465 -17.02642 -16.81052 -16.44252 -16.20550 -15.62428 -15.41582 -15.15065 -14.91671 -14.68203 -14.57269 -14.24466 -14.12514 -13.91252 -13.69669 -13.50643 -13.30583 -12.93266 -12.79925 -12.74929 -12.45509 -12.12220 -11.94079 -11.89283 -11.81105 -11.41350 -11.14728 -11.04842 -10.59604 -10.41972 -9.87985 -9.60223 -9.30015 -9.23436 -8.25416 -6.20641 -0.02856 0.20207 0.70220 0.74783 1.27695 1.36214 1.38230 1.73610 1.92212 2.32919 2.38158 2.74697 3.07595 3.23797 3.54868 3.63489 3.86556 3.91849 4.05409 4.12879 4.26872 4.29703 4.32932 4.36170 4.37205 4.44728 4.50484 4.64985 4.70218 4.84382 4.87476 4.90339 4.96869 5.05413 5.17521 5.21868 5.38954 5.41876 5.64613 5.68360 5.79014 5.83719 6.02968 6.22879 6.31763 6.36859 6.49148 6.79407 6.83801 7.29722 7.42918 8.91200 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003555 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.660978 B = 7875.360037 C = 9040.567137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.338 6.338 3 C 0.090 3.910 4 C -0.002 4.002 5 N -0.440 5.440 6 C 0.044 3.956 7 C 0.142 3.858 8 N -0.660 5.660 9 C 0.510 3.490 10 O -0.536 6.536 11 C -0.109 4.109 12 C 0.053 3.947 13 H 0.035 0.965 14 C -0.465 4.465 15 H 0.037 0.963 16 C 0.024 3.976 17 N -0.950 5.950 18 Si 0.915 3.085 19 H -0.296 1.296 20 H -0.297 1.297 21 H -0.222 1.222 22 C -0.060 4.060 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.155 4.155 28 C -0.152 4.152 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.189 0.811 33 H 0.197 0.803 34 H 0.433 0.567 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 16.583 -1.098 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.251 6.251 3 C 0.041 3.959 4 C -0.161 4.161 5 N -0.149 5.149 6 C -0.117 4.117 7 C 0.044 3.956 8 N -0.309 5.309 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.149 4.149 12 C 0.033 3.967 13 H 0.053 0.947 14 C -0.503 4.503 15 H 0.056 0.944 16 C -0.173 4.173 17 N -0.591 5.591 18 Si 0.743 3.257 19 H -0.223 1.223 20 H -0.224 1.224 21 H -0.145 1.145 22 C -0.061 4.061 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.143 4.143 27 C -0.174 4.174 28 C -0.181 4.181 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.206 0.794 33 H 0.214 0.786 34 H 0.274 0.726 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.126 0.874 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.509 16.239 -0.673 17.508 hybrid contribution 0.133 -1.722 0.458 1.787 sum -6.376 14.517 -0.215 15.857 Atomic orbital electron populations 1.23477 0.75486 1.05989 1.03055 1.86124 1.24369 1.26319 1.88266 1.20034 0.92122 0.86670 0.97050 1.23166 1.01608 0.86092 1.05202 1.67556 1.11414 1.26220 1.09666 1.22941 0.88255 0.98227 1.02241 1.18718 0.85175 0.93365 0.98359 1.43490 1.02981 1.31696 1.52758 1.21473 0.90719 0.81163 0.76672 1.90756 1.74837 1.29228 1.46166 1.21637 0.88479 1.00840 1.03942 1.18077 0.89130 0.93160 0.96287 0.94673 1.20831 1.46489 0.90274 0.92686 0.94437 1.25586 0.94719 0.95455 1.01531 1.70043 1.53424 0.98042 1.37609 0.86240 0.77424 0.78782 0.83290 1.22319 1.22410 1.14460 1.20439 0.97332 0.94965 0.93357 1.21029 0.93960 1.00103 0.98585 1.21402 0.95013 0.99784 0.98058 1.21334 1.00439 1.01829 0.92300 1.21329 0.92925 1.00019 1.00045 1.21286 0.96741 1.02904 0.96426 1.21092 0.93103 0.98963 1.04971 0.86505 0.90964 0.90418 0.79442 0.78615 0.72613 0.87577 0.86505 0.93350 0.86787 0.84265 0.83735 0.84454 0.87373 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.82 113.37 1.11 1.35 16 2 O -0.34 -10.24 10.51 -92.50 -0.97 -11.22 16 3 C 0.09 2.79 6.71 22.58 0.15 2.94 16 4 C 0.00 -0.06 10.22 84.83 0.87 0.81 16 5 N -0.44 -11.09 10.35 -194.91 -2.02 -13.11 16 6 C 0.04 1.04 11.12 84.85 0.94 1.98 16 7 C 0.14 4.19 6.32 38.23 0.24 4.43 16 8 N -0.66 -17.75 5.35 -303.24 -1.62 -19.37 16 9 C 0.51 18.78 7.45 87.66 0.65 19.44 16 10 O -0.54 -26.10 12.49 -3.04 -0.04 -26.13 16 11 C -0.11 -3.64 4.88 29.85 0.15 -3.49 16 12 C 0.05 2.32 1.21 -12.29 -0.01 2.30 16 13 H 0.04 1.66 4.67 -2.39 -0.01 1.65 16 14 C -0.47 -25.76 7.13 25.60 0.18 -25.58 16 15 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 16 C 0.02 1.42 5.47 84.65 0.46 1.89 16 17 N -0.95 -61.96 13.96 21.45 0.30 -61.66 16 18 Si 0.92 48.00 27.35 68.60 1.88 49.88 16 19 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 20 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 21 H -0.22 -10.25 4.29 99.48 0.43 -9.82 16 22 C -0.06 -2.38 4.75 -19.87 -0.09 -2.47 16 23 C -0.12 -4.24 8.87 22.27 0.20 -4.05 16 24 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 25 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 26 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 27 C -0.16 -5.67 9.16 22.27 0.20 -5.47 16 28 C -0.15 -5.58 8.76 22.67 0.20 -5.38 16 29 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.00 7.68 -2.39 -0.02 0.98 16 31 H 0.08 0.99 7.68 -2.39 -0.02 0.97 16 32 H 0.19 3.23 6.31 -2.91 -0.02 3.21 16 33 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.43 7.28 8.83 -92.71 -0.82 6.46 16 35 H 0.11 3.20 7.65 -2.39 -0.02 3.18 16 36 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 38 H 0.11 4.07 7.69 -2.91 -0.02 4.05 16 39 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.11 3.97 6.52 -2.91 -0.02 3.95 16 43 H 0.12 5.46 6.29 -2.91 -0.02 5.44 16 Total: -1.00 -82.87 358.71 3.40 -79.46 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.05 Total: 24.08 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.92 Total: -21.92 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.34 Total: -94.15 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.01 Total: -37.35 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.88 Total: 49.88 kcal Total: -82.87 3.40 -79.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596307915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.277 kcal (2) G-P(sol) polarization free energy of solvation -82.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds