Wall clock time and date at job start Tue Mar 31 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47102 * 300.00001 * 3 2 1 6 6 H 1.48496 * 109.46820 * 60.00538 * 3 2 1 7 7 C 1.37883 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99556 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00023 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47031 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.47156 * 65.00096 * 12 11 10 14 14 C 1.34232 * 116.99932 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00262 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99762 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.46972 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46952 * 180.02562 * 17 16 14 19 19 C 1.52992 * 109.47274 * 0.02562 * 18 17 16 20 20 C 1.50700 * 109.47257 * 179.97438 * 19 18 17 21 21 O 1.20822 * 119.99958 * 359.97438 * 20 19 18 22 22 O 1.34234 * 120.00068 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47195 * 59.99743 * 19 18 17 24 24 C 1.53004 * 109.46666 * 60.00388 * 16 14 13 25 25 C 1.53002 * 109.47303 * 300.00137 * 19 18 17 26 26 C 1.52992 * 109.47131 * 59.99857 * 25 19 18 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47205 * 60.00376 * 9 7 2 29 29 H 1.09008 * 109.47272 * 300.00284 * 9 7 2 30 30 H 1.09002 * 109.46849 * 60.00304 * 11 10 9 31 31 H 1.08998 * 109.47649 * 300.00094 * 11 10 9 32 32 H 1.09003 * 109.47138 * 305.00487 * 12 11 10 33 33 H 1.09001 * 109.47468 * 185.00181 * 12 11 10 34 34 H 1.09006 * 109.46938 * 60.00809 * 17 16 14 35 35 H 1.08994 * 109.47515 * 300.00217 * 17 16 14 36 36 H 1.09004 * 109.47166 * 240.00024 * 18 17 16 37 37 H 1.09005 * 109.46988 * 120.00412 * 18 17 16 38 38 H 0.96698 * 117.00153 * 179.97438 * 22 20 19 39 39 H 1.09005 * 109.46932 * 60.00069 * 23 19 18 40 40 H 1.08998 * 109.47453 * 180.02562 * 23 19 18 41 41 H 1.08996 * 109.47142 * 299.99154 * 24 16 14 42 42 H 1.08994 * 109.47496 * 59.99982 * 24 16 14 43 43 H 1.08996 * 109.46989 * 180.02562 * 25 19 18 44 44 H 1.09002 * 109.46768 * 299.99531 * 25 19 18 45 45 H 1.09006 * 109.46660 * 240.00107 * 26 25 19 46 46 H 1.08998 * 109.47500 * 120.00550 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 8 3.4001 -5.8886 1.2395 14 6 4.3949 -6.7757 1.3980 15 8 4.6297 -7.5817 0.5291 16 6 5.2196 -6.7655 2.6593 17 6 6.2770 -7.8688 2.5861 18 6 7.1140 -7.8589 3.8669 19 6 6.6141 -6.7494 4.7942 20 6 7.4381 -6.7400 6.0559 21 8 8.3329 -7.5391 6.1991 22 8 7.1771 -5.8446 7.0213 23 6 5.1465 -7.0012 5.1458 24 6 4.3103 -7.0105 3.8651 25 6 6.7449 -5.3979 4.0890 26 6 5.9080 -5.4078 2.8083 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 0.9446 -4.9827 -0.8897 31 1 0.9451 -4.9823 0.8902 32 1 3.3209 -5.7957 -0.8430 33 1 2.1818 -6.9375 -0.0898 34 1 6.9249 -7.6947 1.7269 35 1 5.7861 -8.8362 2.4808 36 1 8.1596 -7.6799 3.6163 37 1 7.0205 -8.8217 4.3695 38 1 7.7322 -5.8776 7.8124 39 1 5.0533 -7.9641 5.6482 40 1 4.7902 -6.2105 5.8061 41 1 3.5568 -6.2247 3.9175 42 1 3.8197 -7.9780 3.7596 43 1 6.3892 -4.6074 4.7498 44 1 7.7904 -5.2184 3.8385 45 1 6.5561 -5.2330 1.9495 46 1 5.1544 -4.6220 2.8606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:44 Heat of formation + Delta-G solvation = -247.417348 kcal Electronic energy + Delta-G solvation = -28626.317343 eV Core-core repulsion = 24480.038036 eV Total energy + Delta-G solvation = -4146.279307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95958 -40.46010 -39.12513 -37.06112 -36.46155 -36.03720 -32.85406 -32.64258 -31.35618 -31.25682 -30.03043 -26.98465 -25.36012 -23.36438 -23.23308 -22.60756 -22.31304 -21.73510 -20.66741 -18.44045 -18.00619 -17.60623 -16.99377 -16.74374 -16.39946 -16.18749 -15.91503 -15.45515 -15.35268 -15.18404 -14.65289 -14.37534 -14.02731 -13.38641 -13.35339 -13.05020 -12.74573 -12.55047 -12.53762 -12.48669 -12.42136 -12.38533 -12.20030 -11.93511 -11.80910 -11.73962 -11.43869 -10.93966 -10.89572 -10.77618 -10.76068 -10.66355 -10.40540 -10.29023 -10.21958 -10.14451 -10.01909 -9.13899 -8.90434 -8.23924 -6.14369 -4.15978 1.85728 2.23434 2.65466 2.72967 3.27254 3.33911 3.40195 3.97748 4.07741 4.27720 4.30741 4.51846 4.69476 4.70968 4.79790 4.81242 4.95337 4.99269 4.99621 5.01999 5.05611 5.10096 5.21191 5.22473 5.43766 5.62293 5.64343 5.67242 5.74366 5.83576 5.84577 5.86750 5.89554 5.92925 5.94799 5.97715 6.05322 6.10727 6.16615 6.58817 7.02979 7.37241 7.56092 7.75917 7.83494 8.10119 8.49799 8.96962 9.48981 10.97232 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002905 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.372461 B = 9634.952490 C =11057.480366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.470 3.530 15 O -0.514 6.514 16 C -0.046 4.046 17 C -0.096 4.096 18 C -0.096 4.096 19 C -0.048 4.048 20 C 0.490 3.510 21 O -0.515 6.515 22 O -0.511 6.511 23 C -0.103 4.103 24 C -0.106 4.106 25 C -0.103 4.103 26 C -0.108 4.108 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.374 -16.022 11.719 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C -0.001 4.001 13 O -0.251 6.251 14 C 0.313 3.687 15 O -0.403 6.403 16 C -0.048 4.048 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.049 4.049 20 C 0.332 3.668 21 O -0.403 6.403 22 O -0.323 6.323 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.145 4.145 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.267 0.733 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.452 -16.292 11.116 22.806 hybrid contribution 0.343 0.740 0.325 0.878 sum 11.795 -15.552 11.440 22.624 Atomic orbital electron populations 1.69969 1.06112 1.27102 1.50592 1.24952 0.94980 0.99462 0.95117 0.86283 0.80043 0.82552 0.77645 1.19446 1.20851 1.20798 1.21079 0.94122 0.89258 1.50753 0.91450 1.20241 0.88747 0.83512 0.95485 1.87915 1.35297 1.12585 1.95221 1.22312 0.93240 0.85480 1.00531 1.23223 0.93689 0.98740 0.84398 1.86595 1.43230 1.53933 1.41386 1.23483 0.78983 0.77852 0.88383 1.90635 1.67912 1.38288 1.43418 1.20464 0.94732 0.98641 0.90915 1.21471 0.96266 0.97843 0.97803 1.21484 1.00060 0.97412 0.94371 1.20529 0.95556 0.99161 0.89643 1.23427 0.82007 0.76790 0.84527 1.90714 1.31248 1.38757 1.79596 1.84561 1.61397 1.56085 1.30209 1.21560 0.91158 1.03230 0.98068 1.21569 0.97450 1.03659 0.91683 1.21577 1.01158 0.94474 0.96852 1.21584 0.99898 0.95144 0.97906 0.92676 0.97651 0.97506 0.92024 0.93201 0.90539 0.90509 0.90342 0.90468 0.90483 0.90561 0.73251 0.90984 0.89668 0.89277 0.90874 0.89630 0.90919 0.90638 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.90 9.43 -34.44 -0.32 -15.23 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.21 5.69 36.01 0.20 5.42 16 10 O -0.39 -9.21 10.30 -38.80 -0.40 -9.61 16 11 C 0.06 1.10 6.33 37.16 0.24 1.34 16 12 C 0.07 1.13 5.84 37.16 0.22 1.34 16 13 O -0.34 -5.30 10.00 -42.03 -0.42 -5.72 16 14 C 0.47 6.62 6.55 36.01 0.24 6.86 16 15 O -0.51 -8.23 15.73 -18.75 -0.29 -8.52 16 16 C -0.05 -0.50 0.71 -155.68 -0.11 -0.61 16 17 C -0.10 -0.93 4.28 -26.73 -0.11 -1.04 16 18 C -0.10 -0.83 4.28 -26.73 -0.11 -0.95 16 19 C -0.05 -0.41 0.71 -155.66 -0.11 -0.52 16 20 C 0.49 4.45 6.92 36.01 0.25 4.70 16 21 O -0.52 -6.07 16.74 -18.75 -0.31 -6.39 16 22 O -0.51 -3.52 13.23 -39.27 -0.52 -4.04 16 23 C -0.10 -0.80 4.92 -26.75 -0.13 -0.93 16 24 C -0.11 -0.96 4.91 -26.75 -0.13 -1.09 16 25 C -0.10 -0.89 4.92 -26.73 -0.13 -1.02 16 26 C -0.11 -1.12 4.92 -26.76 -0.13 -1.25 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.01 0.20 8.14 -51.92 -0.42 -0.23 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.22 8.13 -51.93 -0.42 0.79 16 33 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.41 1.16 9.10 45.56 0.41 1.58 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 41 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -34.53 377.50 -7.52 -42.05 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.72 Total: -2.71 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.25 Total: -1.48 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.95 Total: -34.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.53 -7.52 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.369 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds