Wall clock time and date at job start Tue Mar 31 2020 14:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47102 * 300.00001 * 3 2 1 6 6 H 1.48496 * 109.46820 * 60.00538 * 3 2 1 7 7 C 1.37883 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99556 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00023 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47031 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.47156 * 65.00096 * 12 11 10 14 14 C 1.34232 * 116.99932 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00262 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99762 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.46972 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46952 * 180.02562 * 17 16 14 19 19 C 1.52992 * 109.47274 * 0.02562 * 18 17 16 20 20 C 1.50700 * 109.47257 * 179.97438 * 19 18 17 21 21 O 1.20822 * 119.99958 * 359.97438 * 20 19 18 22 22 O 1.34234 * 120.00068 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47195 * 59.99743 * 19 18 17 24 24 C 1.53004 * 109.46666 * 60.00388 * 16 14 13 25 25 C 1.53002 * 109.47303 * 300.00137 * 19 18 17 26 26 C 1.52992 * 109.47131 * 59.99857 * 25 19 18 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47205 * 60.00376 * 9 7 2 29 29 H 1.09008 * 109.47272 * 300.00284 * 9 7 2 30 30 H 1.09002 * 109.46849 * 60.00304 * 11 10 9 31 31 H 1.08998 * 109.47649 * 300.00094 * 11 10 9 32 32 H 1.09003 * 109.47138 * 305.00487 * 12 11 10 33 33 H 1.09001 * 109.47468 * 185.00181 * 12 11 10 34 34 H 1.09006 * 109.46938 * 60.00809 * 17 16 14 35 35 H 1.08994 * 109.47515 * 300.00217 * 17 16 14 36 36 H 1.09004 * 109.47166 * 240.00024 * 18 17 16 37 37 H 1.09005 * 109.46988 * 120.00412 * 18 17 16 38 38 H 0.96698 * 117.00153 * 179.97438 * 22 20 19 39 39 H 1.09005 * 109.46932 * 60.00069 * 23 19 18 40 40 H 1.08998 * 109.47453 * 180.02562 * 23 19 18 41 41 H 1.08996 * 109.47142 * 299.99154 * 24 16 14 42 42 H 1.08994 * 109.47496 * 59.99982 * 24 16 14 43 43 H 1.08996 * 109.46989 * 180.02562 * 25 19 18 44 44 H 1.09002 * 109.46768 * 299.99531 * 25 19 18 45 45 H 1.09006 * 109.46660 * 240.00107 * 26 25 19 46 46 H 1.08998 * 109.47500 * 120.00550 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 8 3.4001 -5.8886 1.2395 14 6 4.3949 -6.7757 1.3980 15 8 4.6297 -7.5817 0.5291 16 6 5.2196 -6.7655 2.6593 17 6 6.2770 -7.8688 2.5861 18 6 7.1140 -7.8589 3.8669 19 6 6.6141 -6.7494 4.7942 20 6 7.4381 -6.7400 6.0559 21 8 8.3329 -7.5391 6.1991 22 8 7.1771 -5.8446 7.0213 23 6 5.1465 -7.0012 5.1458 24 6 4.3103 -7.0105 3.8651 25 6 6.7449 -5.3979 4.0890 26 6 5.9080 -5.4078 2.8083 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 0.9446 -4.9827 -0.8897 31 1 0.9451 -4.9823 0.8902 32 1 3.3209 -5.7957 -0.8430 33 1 2.1818 -6.9375 -0.0898 34 1 6.9249 -7.6947 1.7269 35 1 5.7861 -8.8362 2.4808 36 1 8.1596 -7.6799 3.6163 37 1 7.0205 -8.8217 4.3695 38 1 7.7322 -5.8776 7.8124 39 1 5.0533 -7.9641 5.6482 40 1 4.7902 -6.2105 5.8061 41 1 3.5568 -6.2247 3.9175 42 1 3.8197 -7.9780 3.7596 43 1 6.3892 -4.6074 4.7498 44 1 7.7904 -5.2184 3.8385 45 1 6.5561 -5.2330 1.9495 46 1 5.1544 -4.6220 2.8606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:43 Heat of formation + Delta-G solvation = -268.824161 kcal Electronic energy + Delta-G solvation = -28627.245612 eV Core-core repulsion = 24480.038036 eV Total energy + Delta-G solvation = -4147.207576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77968 -41.41943 -40.00895 -38.69420 -37.42640 -37.11956 -34.93775 -33.54334 -32.08264 -32.03951 -31.49896 -29.02537 -26.25746 -24.58450 -24.19846 -23.96775 -23.54460 -22.77318 -21.59233 -19.15714 -18.98672 -18.69282 -18.33592 -17.99434 -17.91390 -17.32198 -16.82338 -16.67317 -16.36645 -16.30373 -16.09780 -16.03562 -15.29550 -14.67484 -14.30588 -14.07709 -14.02787 -13.75781 -13.31018 -13.25342 -13.24076 -13.21662 -13.18181 -13.11988 -13.04080 -12.86963 -12.71151 -12.58034 -12.48652 -12.41584 -11.99359 -11.71735 -11.56923 -11.48636 -11.25577 -11.07367 -11.03839 -10.96766 -10.88152 -10.25964 -8.31533 -6.43299 1.10595 1.16881 1.41767 1.42610 1.57342 1.62088 2.07196 2.35419 3.02732 3.06901 3.23251 3.33523 3.39828 3.75440 3.91666 3.93384 4.00311 4.04485 4.11037 4.21937 4.23475 4.24939 4.27872 4.33078 4.42160 4.43813 4.51884 4.67492 4.86751 4.91514 4.95226 4.99673 5.00652 5.12245 5.13661 5.18388 5.18763 5.19950 5.22946 5.26664 5.43003 5.55854 5.61647 5.96291 6.50784 6.68093 6.81074 7.00409 7.28388 8.80865 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002905 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.372461 B = 9634.952490 C =11057.480366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.055 3.945 12 C 0.076 3.924 13 O -0.351 6.351 14 C 0.469 3.531 15 O -0.535 6.535 16 C -0.044 4.044 17 C -0.091 4.091 18 C -0.090 4.090 19 C -0.048 4.048 20 C 0.499 3.501 21 O -0.545 6.545 22 O -0.507 6.507 23 C -0.097 4.097 24 C -0.103 4.103 25 C -0.098 4.098 26 C -0.106 4.106 27 H 0.271 0.729 28 H -0.010 1.010 29 H -0.010 1.010 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.427 0.573 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.131 -15.868 12.862 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.328 6.328 11 C -0.022 4.022 12 C 0.003 3.997 13 O -0.267 6.267 14 C 0.314 3.686 15 O -0.425 6.425 16 C -0.045 4.045 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.049 4.049 20 C 0.342 3.658 21 O -0.435 6.435 22 O -0.320 6.320 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.289 0.711 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.205 -16.147 12.281 23.675 hybrid contribution 0.069 0.634 -0.030 0.639 sum 12.274 -15.513 12.251 23.267 Atomic orbital electron populations 1.70065 1.07676 1.28590 1.50550 1.25925 0.95947 1.03272 0.93946 0.85163 0.78696 0.77453 0.78277 1.18875 1.19789 1.19558 1.21404 0.94084 0.90862 1.52152 0.92131 1.19866 0.88550 0.84391 0.93840 1.87861 1.35455 1.14133 1.95319 1.22625 0.94452 0.83362 1.01780 1.23183 0.93148 0.99115 0.84251 1.86598 1.43909 1.54750 1.41400 1.24159 0.78422 0.76908 0.89130 1.90619 1.68381 1.39054 1.44425 1.20582 0.94792 0.99202 0.89929 1.21428 0.95856 0.97366 0.98166 1.21425 0.99677 0.97843 0.93810 1.20513 0.96006 0.98758 0.89621 1.23343 0.81273 0.76421 0.84734 1.90713 1.32509 1.40048 1.80252 1.84518 1.61681 1.55072 1.30742 1.21549 0.90253 1.04305 0.97369 1.21571 0.97193 1.03851 0.91488 1.21533 1.01129 0.94930 0.95914 1.21547 0.99588 0.94461 0.98820 0.92028 0.99178 0.99194 0.90270 0.92400 0.91288 0.87476 0.91135 0.90324 0.90629 0.90049 0.71080 0.89634 0.88961 0.90024 0.90016 0.89044 0.90269 0.91236 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 43.74 29.54 68.60 2.03 45.76 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -32.23 9.43 25.60 0.24 -31.99 16 8 H 0.06 3.55 7.81 -2.92 -0.02 3.53 16 9 C 0.21 11.48 5.69 71.24 0.41 11.88 16 10 O -0.41 -19.60 10.30 -145.57 -1.50 -21.10 16 11 C 0.05 1.93 6.33 71.98 0.46 2.39 16 12 C 0.08 2.32 5.84 71.98 0.42 2.74 16 13 O -0.35 -11.05 10.00 -48.79 -0.49 -11.53 16 14 C 0.47 13.14 6.55 71.24 0.47 13.60 16 15 O -0.53 -16.99 15.73 21.97 0.35 -16.64 16 16 C -0.04 -0.92 0.71 -52.94 -0.04 -0.95 16 17 C -0.09 -1.67 4.28 30.59 0.13 -1.54 16 18 C -0.09 -1.44 4.28 30.59 0.13 -1.31 16 19 C -0.05 -0.73 0.71 -52.93 -0.04 -0.77 16 20 C 0.50 8.07 6.92 71.24 0.49 8.56 16 21 O -0.54 -11.99 16.74 21.98 0.37 -11.62 16 22 O -0.51 -5.76 13.23 -51.46 -0.68 -6.44 16 23 C -0.10 -1.32 4.92 30.58 0.15 -1.17 16 24 C -0.10 -1.75 4.91 30.58 0.15 -1.60 16 25 C -0.10 -1.57 4.92 30.59 0.15 -1.42 16 26 C -0.11 -2.19 4.92 30.58 0.15 -2.04 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 33 H 0.11 2.61 8.13 -2.39 -0.02 2.59 16 34 H 0.07 1.41 8.10 -2.38 -0.02 1.39 16 35 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.07 1.25 8.10 -2.38 -0.02 1.23 16 37 H 0.08 1.25 8.10 -2.38 -0.02 1.23 16 38 H 0.43 1.38 9.10 -74.06 -0.67 0.70 16 39 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 41 H 0.08 1.52 8.11 -2.39 -0.02 1.50 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.38 8.11 -2.39 -0.02 1.36 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 Total: -1.00 -73.69 377.50 4.40 -69.29 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.30 Total: 9.68 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 3.73 Total: -2.72 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.28 Total: -54.68 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -1.95 Total: -67.34 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.69 4.40 -69.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.530 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds