Wall clock time and date at job start Tue Mar 31 2020 14:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35677 * 116.99856 * 2 1 4 4 C 1.38825 * 119.64124 * 180.02562 * 3 2 1 5 5 C 1.38546 * 119.25502 * 180.02562 * 4 3 2 6 6 C 1.38556 * 118.55858 * 0.02562 * 5 4 3 7 7 C 1.38872 * 119.22792 * 359.97438 * 6 5 4 8 8 N 1.39409 * 119.66193 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00128 * 185.34839 * 8 7 6 10 10 O 1.21271 * 119.99789 * 354.59991 * 9 8 7 11 11 C 1.50695 * 119.99910 * 174.60378 * 9 8 7 12 12 C 1.52997 * 109.47078 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47428 * 54.99783 * 12 11 9 14 14 C 1.50708 * 109.47155 * 294.99729 * 12 11 9 15 15 H 1.07991 * 120.00272 * 334.47490 * 14 12 11 16 16 C 1.37875 * 119.99578 * 154.47032 * 14 12 11 17 17 N 1.31514 * 119.99717 * 184.49417 * 16 14 12 18 18 Si 1.86801 * 120.00385 * 4.49430 * 16 14 12 19 19 H 1.48497 * 109.46991 * 94.07637 * 18 16 14 20 20 H 1.48501 * 109.47070 * 214.07344 * 18 16 14 21 21 H 1.48495 * 109.46963 * 334.07455 * 18 16 14 22 22 C 1.50706 * 109.47256 * 175.00075 * 12 11 9 23 23 C 1.38237 * 120.00096 * 55.70632 * 22 12 11 24 24 C 1.38233 * 120.00164 * 179.78950 * 23 22 12 25 25 C 1.38236 * 119.99450 * 0.44098 * 24 23 22 26 26 C 1.38227 * 120.00332 * 359.81227 * 25 24 23 27 27 C 1.38232 * 120.00510 * 359.97438 * 26 25 24 28 28 N 1.32282 * 119.64066 * 0.29367 * 3 2 1 29 29 H 1.09003 * 109.46920 * 299.99662 * 1 2 3 30 30 H 1.08995 * 109.47462 * 60.00148 * 1 2 3 31 31 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.37464 * 0.04017 * 4 3 2 33 33 H 1.07999 * 120.71946 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.38434 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99668 * 5.34714 * 8 7 6 36 36 H 1.08993 * 109.47039 * 299.99803 * 11 9 8 37 37 H 1.09002 * 109.47284 * 59.99782 * 11 9 8 38 38 H 0.97001 * 120.00510 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99430 * 0.02562 * 23 22 12 40 40 H 1.07995 * 120.00226 * 180.27730 * 24 23 22 41 41 H 1.08009 * 119.99477 * 179.83469 * 25 24 23 42 42 H 1.08004 * 120.00267 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.00701 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4317 1.2729 -0.0005 5 6 4.0524 2.5116 0.0000 6 6 3.2610 3.6489 0.0016 7 6 1.8789 3.5134 0.0021 8 7 1.0741 4.6517 0.0043 9 6 -0.2638 4.5308 0.1135 10 8 -0.7754 3.4314 0.1113 11 6 -1.1238 5.7620 0.2383 12 6 -2.5930 5.3490 0.3460 13 1 -2.7140 4.6487 1.1724 14 6 -3.0249 4.6895 -0.9385 15 1 -2.5171 4.9228 -1.8626 16 6 -4.0683 3.7883 -0.9337 17 7 -4.3881 3.1467 -2.0363 18 14 -5.0280 3.4786 0.6388 19 1 -6.2260 4.3554 0.6683 20 1 -5.4539 2.0568 0.6868 21 1 -4.1668 3.7773 1.8111 22 6 -3.4412 6.5698 0.5937 23 6 -3.3838 7.6401 -0.2793 24 6 -4.1650 8.7581 -0.0544 25 6 -4.9969 8.8095 1.0484 26 6 -5.0504 7.7414 1.9242 27 6 -4.2725 6.6215 1.6970 28 7 1.3176 2.3137 0.0059 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0202 0.3673 -0.0016 33 1 5.1296 2.5889 0.0000 34 1 3.7138 4.6295 0.0017 35 1 1.4770 5.5307 -0.0729 36 1 -0.8358 6.3174 1.1308 37 1 -0.9872 6.3913 -0.6411 38 1 -5.1219 2.5124 -2.0330 39 1 -2.7313 7.6012 -1.1391 40 1 -4.1235 9.5924 -0.7389 41 1 -5.6053 9.6842 1.2255 42 1 -5.7007 7.7814 2.7856 43 1 -4.3146 5.7869 2.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617364467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:04 Heat of formation + Delta-G solvation = 8.529366 kcal Electronic energy + Delta-G solvation = -27319.088452 eV Core-core repulsion = 23523.509498 eV Total energy + Delta-G solvation = -3795.578953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68758 -39.24463 -38.51533 -37.45768 -34.56199 -33.94254 -32.11335 -31.70054 -30.29915 -29.99084 -28.82980 -26.90760 -25.98438 -23.42435 -22.96461 -22.42562 -21.91220 -20.36441 -19.28626 -18.43128 -17.07939 -16.92400 -16.38973 -16.02097 -15.90013 -15.77570 -15.35761 -14.75566 -14.68151 -14.20609 -13.98114 -13.80027 -13.35658 -13.22653 -13.04354 -12.84059 -12.62621 -12.37833 -12.19764 -11.97880 -11.92601 -11.44919 -11.29377 -10.98546 -10.78840 -10.62964 -10.41593 -10.19618 -9.96955 -9.77808 -9.54926 -9.29861 -9.17569 -8.70343 -8.47278 -8.26705 -7.85949 -7.83369 -6.02118 -3.98910 1.32078 1.45654 2.03409 2.09730 3.10627 3.33553 3.37051 3.39982 3.41329 3.43161 4.08316 4.45933 4.51006 4.54947 5.01540 5.09970 5.24658 5.28325 5.42952 5.47071 5.49705 5.54725 5.63690 5.66952 5.83699 5.85182 5.90551 5.95869 6.00001 6.16761 6.17470 6.25286 6.27085 6.32668 6.48778 6.64565 6.76612 6.85525 6.99245 7.09464 7.19343 7.35101 7.54341 7.60672 7.66470 7.76293 8.25731 8.48187 8.86314 8.97097 9.60660 11.10730 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003948 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.563914 B = 7090.897629 C = 8348.304078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.353 3.647 4 C -0.238 4.238 5 C -0.016 4.016 6 C -0.260 4.260 7 C 0.415 3.585 8 N -0.672 5.672 9 C 0.498 3.502 10 O -0.427 6.427 11 C -0.113 4.113 12 C 0.048 3.952 13 H 0.057 0.943 14 C -0.484 4.484 15 H 0.072 0.928 16 C 0.084 3.916 17 N -0.895 5.895 18 Si 0.868 3.132 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.259 1.259 22 C -0.038 4.038 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.150 4.150 26 C -0.122 4.122 27 C -0.144 4.144 28 N -0.528 5.528 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.262 0.738 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.252 4.899 6.130 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.218 6.218 3 C 0.173 3.827 4 C -0.260 4.260 5 C -0.042 4.042 6 C -0.284 4.284 7 C 0.183 3.817 8 N -0.320 5.320 9 C 0.283 3.717 10 O -0.290 6.290 11 C -0.153 4.153 12 C 0.029 3.971 13 H 0.075 0.925 14 C -0.521 4.521 15 H 0.090 0.910 16 C -0.118 4.118 17 N -0.533 5.533 18 Si 0.697 3.303 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.184 1.184 22 C -0.038 4.038 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.168 4.168 26 C -0.140 4.140 27 C -0.162 4.162 28 N -0.258 5.258 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.763 3.636 6.066 13.725 hybrid contribution 0.027 0.426 0.560 0.704 sum 11.789 4.062 6.626 14.121 Atomic orbital electron populations 1.22891 0.76051 1.02257 1.04094 1.86182 1.23822 1.24433 1.87379 1.19681 0.88862 0.84530 0.89648 1.20856 0.91898 0.99372 1.13904 1.21039 0.99859 0.90750 0.92546 1.21247 0.91976 1.00320 1.14877 1.18127 0.87430 0.85839 0.90349 1.44177 1.07761 1.06993 1.73085 1.21169 0.80586 0.92926 0.77007 1.90824 1.70794 1.27329 1.40102 1.21647 0.96971 0.94479 1.02205 1.18310 0.87769 0.90880 1.00187 0.92538 1.20597 1.16625 1.22561 0.92321 0.91042 1.24862 0.96698 0.94731 0.95555 1.69890 1.29287 1.26849 1.27264 0.87045 0.80707 0.77258 0.85330 1.20310 1.21831 1.18388 1.20745 0.96442 0.95086 0.91565 1.20936 0.99764 0.92921 0.98939 1.21050 0.97380 0.98312 0.97468 1.20865 1.00945 0.98618 0.96421 1.20975 0.99449 0.94249 0.99342 1.21145 0.98644 0.97961 0.98424 1.67256 1.39407 0.97158 1.21932 0.91825 0.91279 0.89200 0.84616 0.84288 0.84802 0.75144 0.90879 0.89480 0.92833 0.86339 0.87111 0.87336 0.87296 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 101.05 1.05 1.76 16 2 O -0.31 -5.24 10.47 -18.73 -0.20 -5.44 16 3 C 0.35 5.95 7.48 -17.14 -0.13 5.82 16 4 C -0.24 -3.10 10.04 -39.25 -0.39 -3.49 16 5 C -0.02 -0.18 10.16 -39.35 -0.40 -0.58 16 6 C -0.26 -3.06 9.93 -39.23 -0.39 -3.45 16 7 C 0.41 6.57 7.42 -154.68 -1.15 5.43 16 8 N -0.67 -9.98 5.39 -11.45 -0.06 -10.04 16 9 C 0.50 9.55 7.53 -10.99 -0.08 9.46 16 10 O -0.43 -10.29 13.25 5.57 0.07 -10.22 16 11 C -0.11 -1.99 4.84 -27.89 -0.14 -2.12 16 12 C 0.05 1.06 1.24 -92.92 -0.12 0.95 16 13 H 0.06 1.36 5.12 -51.93 -0.27 1.10 16 14 C -0.48 -13.06 7.18 -34.44 -0.25 -13.30 16 15 H 0.07 2.10 8.05 -52.49 -0.42 1.68 16 16 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 18 Si 0.87 22.28 25.30 -169.99 -4.30 17.98 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.26 -6.26 5.11 56.52 0.29 -5.97 16 22 C -0.04 -0.77 4.31 -104.62 -0.45 -1.22 16 23 C -0.11 -2.00 8.93 -39.58 -0.35 -2.35 16 24 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 25 C -0.15 -2.41 10.05 -39.59 -0.40 -2.81 16 26 C -0.12 -2.10 10.05 -39.59 -0.40 -2.50 16 27 C -0.14 -2.83 8.20 -39.58 -0.32 -3.15 16 28 N -0.53 -9.95 6.74 -12.44 -0.08 -10.03 16 29 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.41 4.20 8.70 -40.82 -0.36 3.84 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.40 7.35 -51.93 -0.38 1.02 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.12 2.10 7.40 -52.48 -0.39 1.71 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.11 2.19 6.45 -52.49 -0.34 1.85 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -35.16 359.90 -8.40 -43.56 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.62 Total: 7.36 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -4.41 Total: -11.66 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.63 Total: -47.01 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.12 Total: -15.66 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.30 Total: 17.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.16 -8.40 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617364467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.093 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds