Wall clock time and date at job start Tue Mar 31 2020 14:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35677 * 116.99856 * 2 1 4 4 C 1.38825 * 119.64124 * 180.02562 * 3 2 1 5 5 C 1.38546 * 119.25502 * 180.02562 * 4 3 2 6 6 C 1.38556 * 118.55858 * 0.02562 * 5 4 3 7 7 C 1.38872 * 119.22792 * 359.97438 * 6 5 4 8 8 N 1.39409 * 119.66193 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00128 * 185.34839 * 8 7 6 10 10 O 1.21271 * 119.99789 * 354.59991 * 9 8 7 11 11 C 1.50695 * 119.99910 * 174.60378 * 9 8 7 12 12 C 1.52997 * 109.47078 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47428 * 54.99783 * 12 11 9 14 14 C 1.50708 * 109.47155 * 294.99729 * 12 11 9 15 15 H 1.07991 * 120.00272 * 334.47490 * 14 12 11 16 16 C 1.37875 * 119.99578 * 154.47032 * 14 12 11 17 17 N 1.31514 * 119.99717 * 184.49417 * 16 14 12 18 18 Si 1.86801 * 120.00385 * 4.49430 * 16 14 12 19 19 H 1.48497 * 109.46991 * 94.07637 * 18 16 14 20 20 H 1.48501 * 109.47070 * 214.07344 * 18 16 14 21 21 H 1.48495 * 109.46963 * 334.07455 * 18 16 14 22 22 C 1.50706 * 109.47256 * 175.00075 * 12 11 9 23 23 C 1.38237 * 120.00096 * 55.70632 * 22 12 11 24 24 C 1.38233 * 120.00164 * 179.78950 * 23 22 12 25 25 C 1.38236 * 119.99450 * 0.44098 * 24 23 22 26 26 C 1.38227 * 120.00332 * 359.81227 * 25 24 23 27 27 C 1.38232 * 120.00510 * 359.97438 * 26 25 24 28 28 N 1.32282 * 119.64066 * 0.29367 * 3 2 1 29 29 H 1.09003 * 109.46920 * 299.99662 * 1 2 3 30 30 H 1.08995 * 109.47462 * 60.00148 * 1 2 3 31 31 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.37464 * 0.04017 * 4 3 2 33 33 H 1.07999 * 120.71946 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.38434 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99668 * 5.34714 * 8 7 6 36 36 H 1.08993 * 109.47039 * 299.99803 * 11 9 8 37 37 H 1.09002 * 109.47284 * 59.99782 * 11 9 8 38 38 H 0.97001 * 120.00510 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99430 * 0.02562 * 23 22 12 40 40 H 1.07995 * 120.00226 * 180.27730 * 24 23 22 41 41 H 1.08009 * 119.99477 * 179.83469 * 25 24 23 42 42 H 1.08004 * 120.00267 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.00701 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4317 1.2729 -0.0005 5 6 4.0524 2.5116 0.0000 6 6 3.2610 3.6489 0.0016 7 6 1.8789 3.5134 0.0021 8 7 1.0741 4.6517 0.0043 9 6 -0.2638 4.5308 0.1135 10 8 -0.7754 3.4314 0.1113 11 6 -1.1238 5.7620 0.2383 12 6 -2.5930 5.3490 0.3460 13 1 -2.7140 4.6487 1.1724 14 6 -3.0249 4.6895 -0.9385 15 1 -2.5171 4.9228 -1.8626 16 6 -4.0683 3.7883 -0.9337 17 7 -4.3881 3.1467 -2.0363 18 14 -5.0280 3.4786 0.6388 19 1 -6.2260 4.3554 0.6683 20 1 -5.4539 2.0568 0.6868 21 1 -4.1668 3.7773 1.8111 22 6 -3.4412 6.5698 0.5937 23 6 -3.3838 7.6401 -0.2793 24 6 -4.1650 8.7581 -0.0544 25 6 -4.9969 8.8095 1.0484 26 6 -5.0504 7.7414 1.9242 27 6 -4.2725 6.6215 1.6970 28 7 1.3176 2.3137 0.0059 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0202 0.3673 -0.0016 33 1 5.1296 2.5889 0.0000 34 1 3.7138 4.6295 0.0017 35 1 1.4770 5.5307 -0.0729 36 1 -0.8358 6.3174 1.1308 37 1 -0.9872 6.3913 -0.6411 38 1 -5.1219 2.5124 -2.0330 39 1 -2.7313 7.6012 -1.1391 40 1 -4.1235 9.5924 -0.7389 41 1 -5.6053 9.6842 1.2255 42 1 -5.7007 7.7814 2.7856 43 1 -4.3146 5.7869 2.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617364467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:03 Heat of formation + Delta-G solvation = -16.102691 kcal Electronic energy + Delta-G solvation = -27320.156578 eV Core-core repulsion = 23523.509498 eV Total energy + Delta-G solvation = -3796.647080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88033 -40.65401 -39.89189 -38.72505 -36.06168 -35.47625 -33.77639 -33.17885 -31.66481 -31.23642 -30.19021 -28.34208 -27.67678 -24.88706 -24.13311 -23.81080 -23.28466 -21.73662 -20.81280 -19.67606 -19.07475 -18.30838 -17.75449 -17.29454 -17.07960 -16.84572 -16.60114 -16.51464 -16.20916 -15.74270 -15.48345 -15.02720 -14.89535 -14.62277 -14.59231 -14.16941 -14.12347 -13.88784 -13.61126 -13.33425 -13.15662 -13.00824 -12.72061 -12.71191 -12.42514 -12.14917 -11.91682 -11.83428 -11.45420 -11.33714 -11.14545 -11.03785 -10.69963 -10.52936 -10.00625 -9.64773 -9.32034 -8.97496 -8.24966 -6.21058 0.19663 0.45521 0.64629 0.70829 1.26885 1.29542 1.35315 1.92168 1.96816 2.20330 2.35138 2.95062 3.05374 3.17916 3.38780 4.00468 4.07449 4.13450 4.18123 4.27555 4.29468 4.33252 4.34291 4.40668 4.42202 4.48124 4.54599 4.61202 4.76441 4.81212 4.84876 4.96160 5.06338 5.20981 5.28047 5.34686 5.36788 5.37778 5.66190 5.69010 5.74674 5.79618 5.99249 6.17061 6.30098 6.32558 6.40821 6.77853 7.08714 7.40801 7.53609 8.92183 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003948 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.563914 B = 7090.897629 C = 8348.304078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.318 6.318 3 C 0.309 3.691 4 C -0.227 4.227 5 C -0.006 4.006 6 C -0.234 4.234 7 C 0.374 3.626 8 N -0.656 5.656 9 C 0.494 3.506 10 O -0.491 6.491 11 C -0.106 4.106 12 C 0.050 3.950 13 H 0.032 0.968 14 C -0.459 4.459 15 H 0.034 0.966 16 C 0.021 3.979 17 N -0.951 5.951 18 Si 0.919 3.081 19 H -0.270 1.270 20 H -0.302 1.302 21 H -0.242 1.242 22 C -0.061 4.061 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.164 4.164 28 N -0.577 5.577 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.122 0.878 32 H 0.160 0.840 33 H 0.193 0.807 34 H 0.179 0.821 35 H 0.435 0.565 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.258 0.742 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.618 8.212 7.751 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.225 6.225 3 C 0.129 3.871 4 C -0.249 4.249 5 C -0.031 4.031 6 C -0.257 4.257 7 C 0.144 3.856 8 N -0.306 5.306 9 C 0.281 3.719 10 O -0.360 6.360 11 C -0.146 4.146 12 C 0.031 3.969 13 H 0.051 0.949 14 C -0.497 4.497 15 H 0.052 0.948 16 C -0.175 4.175 17 N -0.593 5.593 18 Si 0.746 3.254 19 H -0.195 1.195 20 H -0.230 1.230 21 H -0.166 1.166 22 C -0.061 4.061 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.159 4.159 26 C -0.142 4.142 27 C -0.182 4.182 28 N -0.307 5.307 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.210 0.790 34 H 0.196 0.804 35 H 0.275 0.725 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.202 7.021 7.711 17.620 hybrid contribution -0.506 -0.444 0.051 0.675 sum 13.695 6.577 7.763 17.061 Atomic orbital electron populations 1.22667 0.76863 1.03281 1.01001 1.86155 1.22988 1.25289 1.88076 1.20204 0.90399 0.83992 0.92462 1.21308 0.90167 1.01707 1.11716 1.21689 1.02211 0.89063 0.90142 1.21751 0.89866 1.02912 1.11184 1.18612 0.89220 0.85085 0.92706 1.43797 1.06364 1.08224 1.72262 1.21471 0.82110 0.92395 0.75924 1.90817 1.72402 1.29390 1.43368 1.21586 0.93952 0.94347 1.04757 1.18130 0.91057 0.91349 0.96363 0.94946 1.20809 1.14396 1.21423 0.93034 0.94800 1.25590 0.98466 0.95448 0.98019 1.70040 1.30833 1.28971 1.29471 0.86227 0.79816 0.76398 0.82963 1.19515 1.22973 1.16639 1.20468 0.97155 0.95127 0.93384 1.21056 1.00718 0.93404 0.98647 1.21437 0.96150 0.98206 0.98035 1.21349 1.00110 0.99247 0.95187 1.21330 0.98945 0.93490 1.00485 1.21234 0.99491 0.99027 0.98466 1.67044 1.41830 0.98856 1.22932 0.94195 0.95072 0.85949 0.82207 0.79034 0.80411 0.72459 0.87035 0.87795 0.93345 0.86323 0.83839 0.83511 0.84506 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.13 10.38 113.37 1.18 3.31 16 2 O -0.32 -11.31 10.47 -89.94 -0.94 -12.25 16 3 C 0.31 10.69 7.48 84.77 0.63 11.32 16 4 C -0.23 -5.45 10.04 22.48 0.23 -5.22 16 5 C -0.01 -0.10 10.16 22.42 0.23 0.12 16 6 C -0.23 -4.65 9.93 22.50 0.22 -4.43 16 7 C 0.37 11.70 7.42 132.85 0.99 12.68 16 8 N -0.66 -19.19 5.39 -308.52 -1.66 -20.85 16 9 C 0.49 19.59 7.53 87.66 0.66 20.25 16 10 O -0.49 -25.43 13.25 -3.00 -0.04 -25.47 16 11 C -0.11 -3.75 4.84 29.85 0.14 -3.61 16 12 C 0.05 2.30 1.24 -12.28 -0.02 2.28 16 13 H 0.03 1.63 5.12 -2.39 -0.01 1.61 16 14 C -0.46 -26.12 7.18 25.60 0.18 -25.94 16 15 H 0.03 2.13 8.05 -2.92 -0.02 2.10 16 16 C 0.02 1.29 5.47 84.65 0.46 1.75 16 17 N -0.95 -62.91 13.96 21.45 0.30 -62.61 16 18 Si 0.92 48.33 25.30 68.60 1.74 50.07 16 19 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 21 H -0.24 -11.91 5.11 99.48 0.51 -11.41 16 22 C -0.06 -2.46 4.31 -19.86 -0.09 -2.54 16 23 C -0.12 -4.29 8.93 22.27 0.20 -4.09 16 24 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 25 C -0.14 -3.90 10.05 22.27 0.22 -3.67 16 26 C -0.12 -3.88 10.05 22.27 0.22 -3.65 16 27 C -0.16 -6.24 8.20 22.27 0.18 -6.06 16 28 N -0.58 -22.78 6.74 -306.12 -2.06 -24.85 16 29 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 30 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.43 7.93 8.70 -92.71 -0.81 7.13 16 36 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.10 3.29 7.35 -2.39 -0.02 3.27 16 38 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 39 H 0.12 4.11 7.40 -2.91 -0.02 4.09 16 40 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.10 3.98 6.45 -2.91 -0.02 3.97 16 Total: -1.00 -86.95 359.90 3.24 -83.71 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.03 Total: 23.06 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.88 Total: -10.81 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.42 Total: -108.31 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.98 Total: -37.72 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.74 Total: 50.07 kcal Total: -86.95 3.24 -83.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617364467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.604 kcal (2) G-P(sol) polarization free energy of solvation -86.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds