Wall clock time and date at job start Tue Mar 31 2020 14:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99770 * 2 1 4 4 H 1.48506 * 109.47355 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.47564 * 30.00148 * 3 2 1 6 6 H 1.48502 * 109.47353 * 150.00168 * 3 2 1 7 7 C 1.38815 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99932 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46793 * 174.74347 * 10 9 7 12 12 H 1.08999 * 109.87686 * 45.66776 * 11 10 9 13 13 C 1.54330 * 109.88014 * 166.84436 * 11 10 9 14 14 C 1.55156 * 102.94067 * 141.61242 * 13 11 10 15 15 C 1.55134 * 101.48580 * 324.32760 * 14 13 11 16 16 N 1.47019 * 109.88476 * 284.64846 * 11 10 9 17 17 C 1.34784 * 125.64667 * 61.60269 * 16 11 10 18 18 O 1.21551 * 119.99811 * 5.60595 * 17 16 11 19 19 C 1.47864 * 119.99980 * 185.59755 * 17 16 11 20 20 C 1.40616 * 119.75577 * 21.40127 * 19 17 16 21 21 C 1.35728 * 120.83432 * 179.97438 * 20 19 17 22 22 C 1.40698 * 120.08728 * 0.03737 * 21 20 19 23 23 N 1.33803 * 120.86713 * 180.27919 * 22 21 20 24 24 C 1.31324 * 119.76561 * 180.20452 * 23 22 21 25 25 C 1.39759 * 120.71042 * 359.45821 * 24 23 22 26 26 N 1.31275 * 120.67506 * 0.27190 * 25 24 23 27 27 C 1.33818 * 119.73490 * 359.97438 * 26 25 24 28 28 C 1.38413 * 119.75400 * 201.37555 * 19 17 16 29 29 H 0.96999 * 120.00179 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99462 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47062 * 54.74838 * 10 9 7 32 32 H 1.08992 * 109.47318 * 294.74140 * 10 9 7 33 33 H 1.09004 * 110.71376 * 259.97222 * 13 11 10 34 34 H 1.08999 * 110.71900 * 23.24427 * 13 11 10 35 35 H 1.08995 * 111.00701 * 82.56922 * 14 13 11 36 36 H 1.09005 * 111.00107 * 206.38834 * 14 13 11 37 37 H 1.09002 * 110.49593 * 278.45844 * 15 14 13 38 38 H 1.09002 * 110.34181 * 156.06551 * 15 14 13 39 39 H 1.08004 * 119.58428 * 359.97438 * 20 19 17 40 40 H 1.08005 * 119.95677 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.64591 * 179.72621 * 24 23 22 42 42 H 1.07997 * 119.65997 * 180.29107 * 25 24 23 43 43 H 1.08003 * 120.25156 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0693 -4.8167 0.1307 12 1 0.2274 -4.6650 -0.5448 13 6 1.7760 -6.1489 -0.1972 14 6 1.1597 -7.1320 0.8329 15 6 0.9877 -6.2138 2.0715 16 7 0.5879 -4.9077 1.5169 17 6 -0.0998 -3.9527 2.1739 18 8 -0.4595 -2.9506 1.5874 19 6 -0.4169 -4.1241 3.6079 20 6 0.3450 -5.0102 4.3900 21 6 0.0734 -5.1840 5.7085 22 6 -0.9818 -4.4744 6.3108 23 7 -1.2596 -4.6296 7.6104 24 6 -2.2521 -3.9595 8.1495 25 6 -3.0163 -3.0757 7.3826 26 7 -2.7601 -2.9021 6.1068 27 6 -1.7570 -3.5772 5.5334 28 6 -1.4610 -3.4107 4.1706 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.7541 -3.6752 0.8370 32 1 2.6116 -3.7560 -0.9354 33 1 1.5494 -6.4651 -1.2154 34 1 2.8524 -6.0608 -0.0500 35 1 0.1979 -7.5095 0.4857 36 1 1.8445 -7.9523 1.0483 37 1 1.9291 -6.1238 2.6135 38 1 0.2077 -6.6028 2.7262 39 1 1.1565 -5.5595 3.9359 40 1 0.6680 -5.8679 6.2960 41 1 -2.4774 -4.0896 9.1976 42 1 -3.8256 -2.5297 7.8444 43 1 -2.0432 -2.7305 3.5665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723971974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:19 Heat of formation + Delta-G solvation = 82.559901 kcal Electronic energy + Delta-G solvation = -27571.468848 eV Core-core repulsion = 23811.392851 eV Total energy + Delta-G solvation = -3760.075997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54058 -40.07193 -37.65382 -36.70183 -34.91676 -34.24023 -32.05253 -31.21933 -30.68675 -30.52086 -28.74793 -25.84963 -25.26169 -24.46850 -23.15660 -22.53000 -21.68356 -21.06850 -19.54503 -18.77707 -17.87375 -17.26688 -16.78425 -16.43148 -15.90281 -15.21606 -15.07370 -14.88882 -14.47605 -14.34995 -13.98282 -13.79724 -13.52284 -13.38668 -12.96466 -12.94229 -12.61512 -12.43629 -11.93196 -11.83946 -11.81950 -11.80129 -11.66639 -11.50875 -11.15556 -10.95823 -10.69810 -10.61349 -10.47507 -9.95027 -9.56927 -9.29200 -9.14323 -9.06798 -8.69217 -8.65743 -8.18351 -6.60857 -5.47439 -2.75804 -0.00616 0.30614 1.75394 2.37704 3.16486 3.46648 3.55352 3.59606 3.61946 3.83448 3.95412 3.98214 4.10403 4.46649 4.50986 4.64129 4.70330 4.76792 4.86449 4.92094 4.95450 5.08585 5.24296 5.30599 5.38607 5.48635 5.58707 5.72272 5.75931 5.79166 5.84033 5.87832 5.96798 6.00645 6.06153 6.18853 6.22650 6.39510 6.50237 6.61259 6.81810 6.97209 7.07767 7.54192 7.85638 7.89505 8.58515 8.78024 9.82697 10.47412 10.87515 11.73093 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.004400 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.185446 B = 6362.097556 C = 8547.803086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.897 3.103 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.061 0.939 9 N -0.724 5.724 10 C 0.145 3.855 11 C 0.131 3.869 12 H 0.077 0.923 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.093 3.907 16 N -0.613 5.613 17 C 0.553 3.447 18 O -0.450 6.450 19 C -0.094 4.094 20 C -0.087 4.087 21 C -0.094 4.094 22 C 0.088 3.912 23 N -0.430 5.430 24 C 0.078 3.922 25 C 0.069 3.931 26 N -0.414 5.414 27 C 0.073 3.927 28 C -0.018 4.018 29 H 0.250 0.750 30 H 0.400 0.600 31 H 0.017 0.983 32 H 0.020 0.980 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -18.344 13.238 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.206 4.206 3 Si 0.728 3.272 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.376 5.376 10 C 0.015 3.985 11 C 0.028 3.972 12 H 0.095 0.905 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.030 4.030 16 N -0.350 5.350 17 C 0.339 3.661 18 O -0.319 6.319 19 C -0.100 4.100 20 C -0.106 4.106 21 C -0.114 4.114 22 C -0.036 4.036 23 N -0.144 5.144 24 C -0.098 4.098 25 C -0.107 4.107 26 N -0.128 5.128 27 C -0.051 4.051 28 C -0.038 4.038 29 H 0.060 0.940 30 H 0.242 0.758 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.170 0.830 40 H 0.160 0.840 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.626 -17.605 12.749 21.895 hybrid contribution 0.297 1.074 0.299 1.154 sum -2.329 -16.531 13.049 21.189 Atomic orbital electron populations 1.69745 1.04746 1.24695 1.57065 1.24689 0.95360 0.97107 1.03431 0.86354 0.78653 0.84843 0.77307 1.21970 1.21970 1.21110 1.19136 0.90528 0.84682 1.42886 0.92067 1.42874 1.07221 0.98894 1.88582 1.21018 0.93223 0.86557 0.97654 1.21908 0.97376 0.95537 0.82351 0.90542 1.22642 1.00529 0.93492 0.99604 1.22837 1.01733 0.97363 0.95212 1.22652 0.99697 0.83936 0.96726 1.48278 1.56421 1.16125 1.14178 1.17776 0.79646 0.83056 0.85600 1.90961 1.48417 1.26007 1.66557 1.20099 0.96898 0.98081 0.94877 1.21752 0.99085 0.96200 0.93601 1.20637 0.96298 0.99898 0.94526 1.19660 0.96869 0.96618 0.90421 1.68697 1.14796 1.20692 1.10185 1.24093 0.91253 0.92663 1.01778 1.24081 0.99580 0.96619 0.90398 1.68696 1.13565 1.19040 1.11459 1.19450 0.94255 0.96031 0.95349 1.21295 0.95052 0.95664 0.91762 0.94028 0.75763 0.96490 0.96306 0.90064 0.90287 0.90601 0.90027 0.91243 0.90488 0.82983 0.83976 0.80856 0.80781 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.86 13.06 55.49 0.72 -29.13 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 23.91 29.55 -169.99 -5.02 18.89 16 4 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 5 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -7.28 9.99 -15.06 -0.15 -7.43 16 8 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -19.96 4.48 -59.91 -0.27 -20.23 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 C 0.13 2.18 3.04 -66.95 -0.20 1.97 16 12 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 13 C -0.12 -1.39 6.44 -24.89 -0.16 -1.55 16 14 C -0.13 -1.16 7.10 -24.46 -0.17 -1.34 16 15 C 0.09 0.97 4.95 -2.41 -0.01 0.96 16 16 N -0.61 -9.70 3.06 -163.97 -0.50 -10.20 16 17 C 0.55 10.61 7.40 -12.32 -0.09 10.52 16 18 O -0.45 -11.19 13.00 5.32 0.07 -11.12 16 19 C -0.09 -1.51 5.72 -105.00 -0.60 -2.11 16 20 C -0.09 -1.07 7.97 -39.58 -0.32 -1.39 16 21 C -0.09 -1.11 9.95 -39.55 -0.39 -1.50 16 22 C 0.09 1.20 6.59 -84.72 -0.56 0.64 16 23 N -0.43 -5.23 10.46 -10.74 -0.11 -5.34 16 24 C 0.08 0.71 11.21 -17.20 -0.19 0.52 16 25 C 0.07 0.69 11.22 -17.22 -0.19 0.49 16 26 N -0.41 -5.91 10.46 -10.81 -0.11 -6.02 16 27 C 0.07 1.11 6.58 -84.81 -0.56 0.55 16 28 C -0.02 -0.29 9.55 -38.69 -0.37 -0.66 16 29 H 0.25 7.89 8.31 -40.82 -0.34 7.56 16 30 H 0.40 11.81 4.85 -40.82 -0.20 11.61 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.63 6.88 -51.93 -0.36 0.28 16 38 H 0.08 0.70 6.63 -51.93 -0.34 0.35 16 39 H 0.15 1.51 4.21 -52.48 -0.22 1.29 16 40 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.16 2.84 7.76 -52.48 -0.41 2.43 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -39.14 351.49 -9.30 -48.45 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.28 Total: 7.06 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -4.09 Total: 2.36 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -0.27 Total: -70.92 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -39.14 -9.30 -48.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723971974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.008 kcal (2) G-P(sol) polarization free energy of solvation -39.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds