Wall clock time and date at job start Tue Mar 31 2020 14:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99770 * 2 1 4 4 H 1.48506 * 109.47355 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.47564 * 30.00148 * 3 2 1 6 6 H 1.48502 * 109.47353 * 150.00168 * 3 2 1 7 7 C 1.38815 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99932 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46793 * 174.74347 * 10 9 7 12 12 H 1.08999 * 109.87686 * 45.66776 * 11 10 9 13 13 C 1.54330 * 109.88014 * 166.84436 * 11 10 9 14 14 C 1.55156 * 102.94067 * 141.61242 * 13 11 10 15 15 C 1.55134 * 101.48580 * 324.32760 * 14 13 11 16 16 N 1.47019 * 109.88476 * 284.64846 * 11 10 9 17 17 C 1.34784 * 125.64667 * 61.60269 * 16 11 10 18 18 O 1.21551 * 119.99811 * 5.60595 * 17 16 11 19 19 C 1.47864 * 119.99980 * 185.59755 * 17 16 11 20 20 C 1.40616 * 119.75577 * 21.40127 * 19 17 16 21 21 C 1.35728 * 120.83432 * 179.97438 * 20 19 17 22 22 C 1.40698 * 120.08728 * 0.03737 * 21 20 19 23 23 N 1.33803 * 120.86713 * 180.27919 * 22 21 20 24 24 C 1.31324 * 119.76561 * 180.20452 * 23 22 21 25 25 C 1.39759 * 120.71042 * 359.45821 * 24 23 22 26 26 N 1.31275 * 120.67506 * 0.27190 * 25 24 23 27 27 C 1.33818 * 119.73490 * 359.97438 * 26 25 24 28 28 C 1.38413 * 119.75400 * 201.37555 * 19 17 16 29 29 H 0.96999 * 120.00179 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99462 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47062 * 54.74838 * 10 9 7 32 32 H 1.08992 * 109.47318 * 294.74140 * 10 9 7 33 33 H 1.09004 * 110.71376 * 259.97222 * 13 11 10 34 34 H 1.08999 * 110.71900 * 23.24427 * 13 11 10 35 35 H 1.08995 * 111.00701 * 82.56922 * 14 13 11 36 36 H 1.09005 * 111.00107 * 206.38834 * 14 13 11 37 37 H 1.09002 * 110.49593 * 278.45844 * 15 14 13 38 38 H 1.09002 * 110.34181 * 156.06551 * 15 14 13 39 39 H 1.08004 * 119.58428 * 359.97438 * 20 19 17 40 40 H 1.08005 * 119.95677 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.64591 * 179.72621 * 24 23 22 42 42 H 1.07997 * 119.65997 * 180.29107 * 25 24 23 43 43 H 1.08003 * 120.25156 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0693 -4.8167 0.1307 12 1 0.2274 -4.6650 -0.5448 13 6 1.7760 -6.1489 -0.1972 14 6 1.1597 -7.1320 0.8329 15 6 0.9877 -6.2138 2.0715 16 7 0.5879 -4.9077 1.5169 17 6 -0.0998 -3.9527 2.1739 18 8 -0.4595 -2.9506 1.5874 19 6 -0.4169 -4.1241 3.6079 20 6 0.3450 -5.0102 4.3900 21 6 0.0734 -5.1840 5.7085 22 6 -0.9818 -4.4744 6.3108 23 7 -1.2596 -4.6296 7.6104 24 6 -2.2521 -3.9595 8.1495 25 6 -3.0163 -3.0757 7.3826 26 7 -2.7601 -2.9021 6.1068 27 6 -1.7570 -3.5772 5.5334 28 6 -1.4610 -3.4107 4.1706 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.7541 -3.6752 0.8370 32 1 2.6116 -3.7560 -0.9354 33 1 1.5494 -6.4651 -1.2154 34 1 2.8524 -6.0608 -0.0500 35 1 0.1979 -7.5095 0.4857 36 1 1.8445 -7.9523 1.0483 37 1 1.9291 -6.1238 2.6135 38 1 0.2077 -6.6028 2.7262 39 1 1.1565 -5.5595 3.9359 40 1 0.6680 -5.8679 6.2960 41 1 -2.4774 -4.0896 9.1976 42 1 -3.8256 -2.5297 7.8444 43 1 -2.0432 -2.7305 3.5665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723971974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:18 Heat of formation + Delta-G solvation = 52.896666 kcal Electronic energy + Delta-G solvation = -27572.755142 eV Core-core repulsion = 23811.392851 eV Total energy + Delta-G solvation = -3761.362292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50890 -41.31454 -38.78539 -37.97374 -36.21164 -35.85854 -33.54245 -32.82986 -31.73370 -31.57677 -30.29826 -26.88786 -26.80207 -25.65590 -24.59268 -23.78557 -23.11419 -22.03647 -20.72317 -19.95421 -19.16399 -18.78709 -18.08475 -17.58705 -17.05399 -16.71233 -16.34905 -16.15295 -15.79434 -15.36961 -15.26872 -15.09218 -15.02527 -14.71483 -14.53692 -14.08973 -13.76426 -13.70525 -13.24843 -13.12552 -12.98173 -12.88746 -12.81954 -12.78175 -12.75206 -12.63864 -12.27898 -12.01505 -11.78470 -11.60707 -11.47927 -10.91941 -10.76912 -10.18526 -10.06594 -9.78186 -9.50965 -8.83818 -7.82883 -5.11644 -1.00322 -0.63150 0.72123 1.36909 1.39022 1.43446 1.51030 1.93690 2.22060 2.56751 2.91259 2.98685 3.08865 3.18336 3.41341 3.45368 3.62743 3.73153 3.78300 3.89995 3.97956 4.03847 4.13480 4.29473 4.40442 4.41489 4.45147 4.60899 4.68387 4.70196 4.79488 4.82973 4.87310 4.94987 5.03437 5.06997 5.16343 5.16517 5.20141 5.42476 5.46476 5.49934 5.60239 6.18880 6.33946 6.58171 6.65419 7.23846 7.47001 8.32101 8.58168 9.38712 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.004400 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.185446 B = 6362.097556 C = 8547.803086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.742 5.742 10 C 0.141 3.859 11 C 0.130 3.870 12 H 0.046 0.954 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.080 3.920 16 N -0.609 5.609 17 C 0.542 3.458 18 O -0.527 6.527 19 C -0.104 4.104 20 C -0.085 4.085 21 C -0.077 4.077 22 C 0.075 3.925 23 N -0.442 5.442 24 C 0.097 3.903 25 C 0.083 3.917 26 N -0.462 5.462 27 C 0.051 3.949 28 C -0.046 4.046 29 H 0.243 0.757 30 H 0.388 0.612 31 H 0.015 0.985 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.181 0.819 40 H 0.179 0.821 41 H 0.228 0.772 42 H 0.218 0.782 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -21.454 16.288 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.392 5.392 10 C 0.013 3.987 11 C 0.027 3.973 12 H 0.064 0.936 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.041 4.041 16 N -0.344 5.344 17 C 0.331 3.669 18 O -0.402 6.402 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.095 4.095 22 C -0.048 4.048 23 N -0.156 5.156 24 C -0.080 4.080 25 C -0.094 4.094 26 N -0.176 5.176 27 C -0.071 4.071 28 C -0.066 4.066 29 H 0.051 0.949 30 H 0.228 0.772 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.198 0.802 40 H 0.196 0.804 41 H 0.245 0.755 42 H 0.235 0.765 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.737 -20.826 15.771 26.134 hybrid contribution -0.367 1.983 -0.454 2.067 sum -1.104 -18.843 15.318 24.308 Atomic orbital electron populations 1.69980 1.06606 1.24933 1.59066 1.25586 0.96273 1.00925 1.04233 0.85215 0.77550 0.79902 0.77553 1.20964 1.22612 1.19576 1.19598 0.90954 0.86119 1.41290 0.91495 1.43169 1.07116 1.00439 1.88465 1.21250 0.94004 0.85925 0.97502 1.21897 0.95749 0.96976 0.82709 0.93553 1.22643 1.00693 0.90461 1.01368 1.22870 1.02744 0.97183 0.92783 1.23117 1.01348 0.81371 0.98226 1.48392 1.54719 1.17391 1.13916 1.18420 0.78984 0.82655 0.86872 1.90913 1.51753 1.29233 1.68284 1.19969 0.97769 0.99683 0.93493 1.21892 0.99166 0.95638 0.93697 1.21030 0.95310 0.99033 0.94171 1.19895 0.97197 0.96490 0.91200 1.68823 1.16107 1.21652 1.09031 1.25014 0.89063 0.90189 1.03719 1.24964 0.99761 0.95742 0.88917 1.68677 1.14440 1.20578 1.13917 1.19399 0.95534 0.97435 0.94726 1.21093 0.96117 0.96476 0.92945 0.94851 0.77175 0.96725 0.95443 0.88566 0.88954 0.90276 0.85919 0.88760 0.88630 0.80190 0.80357 0.75545 0.76543 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -66.33 13.06 21.65 0.28 -66.05 16 2 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 3 Si 0.97 51.10 29.55 68.60 2.03 53.13 16 4 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 5 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 6 H -0.27 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.25 -15.57 9.99 84.03 0.84 -14.73 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -43.30 4.48 -343.46 -1.54 -44.84 16 10 C 0.14 6.17 5.61 86.38 0.48 6.66 16 11 C 0.13 4.43 3.04 45.34 0.14 4.56 16 12 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 13 C -0.11 -2.25 6.44 31.78 0.20 -2.04 16 14 C -0.12 -1.59 7.10 32.06 0.23 -1.36 16 15 C 0.08 1.45 4.95 86.93 0.43 1.88 16 16 N -0.61 -19.68 3.06 -790.94 -2.42 -22.11 16 17 C 0.54 22.54 7.40 86.79 0.64 23.19 16 18 O -0.53 -29.15 13.00 -3.88 -0.05 -29.20 16 19 C -0.10 -3.57 5.72 -20.11 -0.12 -3.68 16 20 C -0.08 -2.00 7.97 22.27 0.18 -1.82 16 21 C -0.08 -1.62 9.95 22.29 0.22 -1.40 16 22 C 0.07 1.94 6.59 40.32 0.27 2.21 16 23 N -0.44 -9.42 10.46 -187.89 -1.96 -11.38 16 24 C 0.10 1.39 11.21 85.14 0.95 2.35 16 25 C 0.08 1.45 11.22 85.14 0.95 2.41 16 26 N -0.46 -13.52 10.46 -188.11 -1.97 -15.49 16 27 C 0.05 1.62 6.58 40.26 0.27 1.88 16 28 C -0.05 -1.70 9.55 22.85 0.22 -1.49 16 29 H 0.24 16.34 8.31 -92.71 -0.77 15.56 16 30 H 0.39 24.80 4.85 -92.71 -0.45 24.35 16 31 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.03 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.09 1.31 6.88 -2.39 -0.02 1.30 16 38 H 0.10 1.44 6.63 -2.39 -0.02 1.42 16 39 H 0.18 3.05 4.21 -2.91 -0.01 3.04 16 40 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.12 5.07 7.76 -2.91 -0.02 5.05 16 Total: -1.00 -96.66 351.49 1.35 -95.32 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.60 Total: 26.55 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.38 Total: 14.07 kcal Atomic # 7 Polarization: -152.25 SS G_CDS: -7.61 Total: -159.86 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.03 Total: 53.13 kcal Total: -96.66 1.35 -95.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723971974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.212 kcal (2) G-P(sol) polarization free energy of solvation -96.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds