Wall clock time and date at job start Tue Mar 31 2020 14:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99854 * 2 1 4 4 H 1.48499 * 109.46791 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46744 * 300.00236 * 3 2 1 6 6 H 1.48501 * 109.46693 * 60.00113 * 3 2 1 7 7 C 1.38809 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00071 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47293 * 175.40296 * 10 9 7 12 12 H 1.09009 * 109.99739 * 53.88553 * 11 10 9 13 13 C 1.54323 * 109.88318 * 292.78636 * 11 10 9 14 14 C 1.55158 * 102.94491 * 218.38659 * 13 11 10 15 15 C 1.54697 * 101.67260 * 35.33618 * 14 13 11 16 16 N 1.47019 * 109.88448 * 174.97994 * 11 10 9 17 17 C 1.34780 * 125.64414 * 298.31692 * 16 11 10 18 18 O 1.21541 * 120.00544 * 354.49932 * 17 16 11 19 19 C 1.47903 * 119.99809 * 174.49149 * 17 16 11 20 20 N 1.32143 * 120.02899 * 0.02562 * 19 17 16 21 21 C 1.31985 * 122.76430 * 179.97438 * 20 19 17 22 22 C 1.37776 * 121.72780 * 0.25291 * 21 20 19 23 23 C 1.40388 * 118.72888 * 359.50278 * 22 21 20 24 24 C 1.40641 * 122.27385 * 180.18868 * 23 22 21 25 25 C 1.36641 * 117.95119 * 180.28031 * 24 23 22 26 26 C 1.39394 * 119.92211 * 359.97438 * 25 24 23 27 27 N 1.31205 * 121.85645 * 0.02562 * 26 25 24 28 28 C 1.33257 * 121.22483 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00562 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99913 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47205 * 55.40234 * 10 9 7 32 32 H 1.09006 * 109.46953 * 295.40412 * 10 9 7 33 33 H 1.08997 * 110.71824 * 336.75499 * 13 11 10 34 34 H 1.09000 * 110.72066 * 100.02380 * 13 11 10 35 35 H 1.08997 * 111.00416 * 153.57686 * 14 13 11 36 36 H 1.08997 * 111.00490 * 277.42917 * 14 13 11 37 37 H 1.09001 * 110.38458 * 204.36336 * 15 14 13 38 38 H 1.08996 * 110.23680 * 82.11512 * 15 14 13 39 39 H 1.08002 * 119.12960 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.63317 * 179.74224 * 22 21 20 41 41 H 1.08006 * 121.02468 * 0.27950 * 24 23 22 42 42 H 1.07999 * 120.03621 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.07487 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0680 -4.8174 0.1151 12 1 0.3110 -4.7407 -0.6655 13 6 0.3945 -4.7964 1.5034 14 6 0.2967 -6.3021 1.8651 15 6 1.6003 -6.8582 1.2449 16 7 1.7816 -6.0972 -0.0045 17 6 2.4809 -6.5090 -1.0806 18 8 2.4770 -5.8449 -2.0986 19 6 3.2531 -7.7691 -1.0228 20 7 3.2574 -8.4919 0.0834 21 6 3.9266 -9.6241 0.1943 22 6 4.6758 -10.1278 -0.8464 23 6 4.7144 -9.4166 -2.0562 24 6 5.4515 -9.8641 -3.1672 25 6 5.4316 -9.0992 -4.2993 26 6 4.6949 -7.9161 -4.3261 27 7 4.0091 -7.5035 -3.2864 28 6 3.9865 -8.2027 -2.1522 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 0.0002 31 1 2.7452 -3.6796 0.8454 32 1 2.6217 -3.7509 -0.9289 33 1 1.0155 -4.2659 2.2252 34 1 -0.5976 -4.3488 1.4441 35 1 0.2843 -6.4443 2.9456 36 1 -0.5780 -6.7590 1.4024 37 1 1.4948 -7.9215 1.0297 38 1 2.4405 -6.6882 1.9181 39 1 3.8893 -10.1677 1.1268 40 1 5.2199 -11.0541 -0.7349 41 1 6.0158 -10.7841 -3.1269 42 1 5.9853 -9.4113 -5.1724 43 1 4.6885 -7.3222 -5.2282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754611389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:12 Heat of formation + Delta-G solvation = 70.124873 kcal Electronic energy + Delta-G solvation = -27186.491166 eV Core-core repulsion = 23425.875946 eV Total energy + Delta-G solvation = -3760.615221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57041 -39.71438 -38.22816 -37.14195 -34.41084 -33.95249 -32.04840 -31.49166 -31.17487 -30.45535 -28.53633 -25.86853 -24.85630 -24.39954 -23.98847 -22.57867 -21.84548 -20.68071 -19.55558 -18.68904 -17.80546 -17.40858 -16.86857 -16.35766 -16.17767 -15.39603 -15.10261 -14.79093 -14.68993 -14.36508 -13.96078 -13.77777 -13.46261 -13.44431 -13.23631 -13.09838 -12.84617 -12.65309 -12.56468 -12.36547 -11.99613 -11.36294 -11.07712 -11.02534 -10.83774 -10.76735 -10.40763 -10.29777 -10.05968 -9.96496 -9.90816 -9.65714 -9.63194 -9.21249 -8.77140 -8.73778 -8.21082 -6.79135 -5.65630 -2.93157 -0.33898 0.37403 1.38377 2.49884 3.01202 3.19110 3.51195 3.56708 3.59357 3.85325 3.90659 3.96723 4.10638 4.26756 4.38848 4.47601 4.70918 4.78760 4.84575 4.89877 5.04646 5.11293 5.24476 5.24970 5.30297 5.54276 5.61476 5.67837 5.71341 5.73226 5.88496 5.96580 6.04450 6.14857 6.21406 6.25306 6.27629 6.34534 6.56893 6.71092 6.94204 7.12087 7.35314 7.65857 7.81022 7.83621 8.45511 8.53864 9.64404 10.21899 10.57998 11.57647 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003208 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.846205 B = 8726.548674 C =10069.711986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.147 3.853 11 C 0.131 3.869 12 H 0.077 0.923 13 C -0.119 4.119 14 C -0.140 4.140 15 C 0.112 3.888 16 N -0.595 5.595 17 C 0.572 3.428 18 O -0.484 6.484 19 C 0.154 3.846 20 N -0.440 5.440 21 C 0.072 3.928 22 C -0.127 4.127 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.154 4.154 26 C 0.132 3.868 27 N -0.418 5.418 28 C 0.106 3.894 29 H 0.253 0.747 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.166 0.834 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.197 -28.051 -1.412 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.019 3.981 11 C 0.029 3.971 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.178 4.178 15 C -0.011 4.011 16 N -0.330 5.330 17 C 0.356 3.644 18 O -0.355 6.355 19 C 0.001 3.999 20 N -0.153 5.153 21 C -0.074 4.074 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.175 4.175 26 C -0.042 4.042 27 N -0.125 5.125 28 C -0.019 4.019 29 H 0.063 0.937 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.183 0.817 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.406 -26.581 -1.200 27.905 hybrid contribution 1.278 -0.290 -0.633 1.456 sum 9.685 -26.871 -1.833 28.622 Atomic orbital electron populations 1.69667 1.05032 1.25358 1.58350 1.24708 0.95531 0.97539 1.03368 0.86112 0.78802 0.84214 0.77094 1.20623 1.21912 1.21964 1.19266 0.91038 0.84040 1.41861 0.91261 1.42200 1.05762 0.99687 1.89553 1.20940 0.93395 0.85150 0.98651 1.21843 0.94500 0.82815 0.97972 0.90467 1.22653 1.01837 0.95476 0.95736 1.22856 0.97535 0.96528 1.00886 1.22408 0.96951 0.96725 0.85040 1.48331 1.50554 1.19152 1.14932 1.17186 0.80078 0.83986 0.83123 1.90918 1.61072 1.54256 1.29208 1.21584 0.95259 0.95064 0.88041 1.67683 1.17435 1.05910 1.24264 1.22653 0.93409 0.92211 0.99113 1.22357 0.99438 1.00462 0.92511 1.18971 0.98505 0.95730 0.95929 1.21404 0.96487 0.99615 0.91730 1.22147 0.99998 0.96096 0.99309 1.23382 0.90480 0.93318 0.97048 1.68352 1.15972 1.29907 0.98268 1.19476 0.96778 0.91787 0.93839 0.93682 0.78303 0.96153 0.95170 0.89968 0.89880 0.90144 0.91132 0.89214 0.91560 0.81697 0.83755 0.83777 0.83893 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.06 55.49 0.72 -28.53 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.44 29.55 -169.99 -5.02 18.42 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 6 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.23 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.73 -19.82 5.42 -59.91 -0.32 -20.15 16 10 C 0.15 3.42 5.66 -4.04 -0.02 3.40 16 11 C 0.13 2.50 2.89 -66.96 -0.19 2.31 16 12 H 0.08 1.59 8.14 -51.92 -0.42 1.16 16 13 C -0.12 -1.90 6.23 -24.90 -0.15 -2.05 16 14 C -0.14 -1.70 7.07 -24.70 -0.17 -1.88 16 15 C 0.11 1.47 5.71 -2.65 -0.02 1.46 16 16 N -0.60 -10.20 3.07 -164.24 -0.50 -10.70 16 17 C 0.57 10.64 7.55 -12.30 -0.09 10.55 16 18 O -0.48 -10.73 14.41 5.33 0.08 -10.66 16 19 C 0.15 2.36 6.78 -82.54 -0.56 1.80 16 20 N -0.44 -5.42 6.71 -9.55 -0.06 -5.48 16 21 C 0.07 0.62 11.12 -17.65 -0.20 0.42 16 22 C -0.13 -0.97 9.93 -38.94 -0.39 -1.36 16 23 C -0.08 -0.86 5.75 -106.79 -0.61 -1.47 16 24 C -0.07 -0.48 9.94 -39.25 -0.39 -0.87 16 25 C -0.15 -1.12 10.03 -39.73 -0.40 -1.52 16 26 C 0.13 1.39 11.14 -17.39 -0.19 1.19 16 27 N -0.42 -6.40 8.49 -10.75 -0.09 -6.49 16 28 C 0.11 1.52 6.61 -84.63 -0.56 0.96 16 29 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.38 10.73 7.60 -40.82 -0.31 10.42 16 31 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 32 H 0.03 0.79 6.90 -51.93 -0.36 0.43 16 33 H 0.08 1.39 7.77 -51.93 -0.40 0.99 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.08 6.31 -51.93 -0.33 0.75 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 42 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -37.72 357.69 -9.61 -47.32 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.59 Total: 5.52 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -4.20 Total: 5.35 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.26 Total: -71.34 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.72 -9.61 -47.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754611389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.447 kcal (2) G-P(sol) polarization free energy of solvation -37.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds