Wall clock time and date at job start Tue Mar 31 2020 14:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99854 * 2 1 4 4 H 1.48499 * 109.46791 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46744 * 300.00236 * 3 2 1 6 6 H 1.48501 * 109.46693 * 60.00113 * 3 2 1 7 7 C 1.38809 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00071 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47293 * 175.40296 * 10 9 7 12 12 H 1.09009 * 109.99739 * 53.88553 * 11 10 9 13 13 C 1.54323 * 109.88318 * 292.78636 * 11 10 9 14 14 C 1.55158 * 102.94491 * 218.38659 * 13 11 10 15 15 C 1.54697 * 101.67260 * 35.33618 * 14 13 11 16 16 N 1.47019 * 109.88448 * 174.97994 * 11 10 9 17 17 C 1.34780 * 125.64414 * 298.31692 * 16 11 10 18 18 O 1.21541 * 120.00544 * 354.49932 * 17 16 11 19 19 C 1.47903 * 119.99809 * 174.49149 * 17 16 11 20 20 N 1.32143 * 120.02899 * 0.02562 * 19 17 16 21 21 C 1.31985 * 122.76430 * 179.97438 * 20 19 17 22 22 C 1.37776 * 121.72780 * 0.25291 * 21 20 19 23 23 C 1.40388 * 118.72888 * 359.50278 * 22 21 20 24 24 C 1.40641 * 122.27385 * 180.18868 * 23 22 21 25 25 C 1.36641 * 117.95119 * 180.28031 * 24 23 22 26 26 C 1.39394 * 119.92211 * 359.97438 * 25 24 23 27 27 N 1.31205 * 121.85645 * 0.02562 * 26 25 24 28 28 C 1.33257 * 121.22483 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00562 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99913 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47205 * 55.40234 * 10 9 7 32 32 H 1.09006 * 109.46953 * 295.40412 * 10 9 7 33 33 H 1.08997 * 110.71824 * 336.75499 * 13 11 10 34 34 H 1.09000 * 110.72066 * 100.02380 * 13 11 10 35 35 H 1.08997 * 111.00416 * 153.57686 * 14 13 11 36 36 H 1.08997 * 111.00490 * 277.42917 * 14 13 11 37 37 H 1.09001 * 110.38458 * 204.36336 * 15 14 13 38 38 H 1.08996 * 110.23680 * 82.11512 * 15 14 13 39 39 H 1.08002 * 119.12960 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.63317 * 179.74224 * 22 21 20 41 41 H 1.08006 * 121.02468 * 0.27950 * 24 23 22 42 42 H 1.07999 * 120.03621 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.07487 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0680 -4.8174 0.1151 12 1 0.3110 -4.7407 -0.6655 13 6 0.3945 -4.7964 1.5034 14 6 0.2967 -6.3021 1.8651 15 6 1.6003 -6.8582 1.2449 16 7 1.7816 -6.0972 -0.0045 17 6 2.4809 -6.5090 -1.0806 18 8 2.4770 -5.8449 -2.0986 19 6 3.2531 -7.7691 -1.0228 20 7 3.2574 -8.4919 0.0834 21 6 3.9266 -9.6241 0.1943 22 6 4.6758 -10.1278 -0.8464 23 6 4.7144 -9.4166 -2.0562 24 6 5.4515 -9.8641 -3.1672 25 6 5.4316 -9.0992 -4.2993 26 6 4.6949 -7.9161 -4.3261 27 7 4.0091 -7.5035 -3.2864 28 6 3.9865 -8.2027 -2.1522 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 0.0002 31 1 2.7452 -3.6796 0.8454 32 1 2.6217 -3.7509 -0.9289 33 1 1.0155 -4.2659 2.2252 34 1 -0.5976 -4.3488 1.4441 35 1 0.2843 -6.4443 2.9456 36 1 -0.5780 -6.7590 1.4024 37 1 1.4948 -7.9215 1.0297 38 1 2.4405 -6.6882 1.9181 39 1 3.8893 -10.1677 1.1268 40 1 5.2199 -11.0541 -0.7349 41 1 6.0158 -10.7841 -3.1269 42 1 5.9853 -9.4113 -5.1724 43 1 4.6885 -7.3222 -5.2282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754611389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:11 Heat of formation + Delta-G solvation = 42.956656 kcal Electronic energy + Delta-G solvation = -27187.669269 eV Core-core repulsion = 23425.875946 eV Total energy + Delta-G solvation = -3761.793323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39160 -40.97628 -39.04044 -38.53855 -36.43846 -34.77595 -33.52650 -32.81801 -32.36227 -31.36459 -30.24811 -26.87793 -26.57967 -25.18357 -25.07058 -24.21660 -23.18212 -21.88062 -20.73313 -19.79048 -19.09514 -18.55450 -18.18081 -17.63834 -17.28485 -16.55859 -16.47180 -15.98791 -15.69662 -15.43644 -15.28402 -15.18355 -15.04526 -14.89247 -14.43177 -14.10908 -13.99167 -13.79307 -13.70983 -13.57630 -13.13320 -13.02251 -12.91374 -12.77920 -12.18241 -12.08081 -11.94133 -11.83524 -11.81279 -11.58353 -11.31167 -10.98762 -10.78818 -10.38126 -10.14767 -9.71508 -9.42453 -9.07798 -7.99488 -5.30096 -1.11812 -0.33621 0.64089 1.42913 1.45722 1.55822 1.63616 1.80116 2.14845 2.52885 2.96439 3.04833 3.19595 3.32601 3.38834 3.61193 3.68472 3.69969 3.76226 3.91936 3.93449 4.09541 4.21786 4.26238 4.31858 4.35811 4.47324 4.53511 4.58924 4.65132 4.79299 4.91383 4.94690 4.99152 5.01850 5.09614 5.13088 5.14964 5.32382 5.37720 5.41040 5.51611 5.62336 6.21495 6.46901 6.59545 6.92454 7.15090 7.27984 7.97571 8.27372 9.24051 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003208 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.846205 B = 8726.548674 C =10069.711986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.734 5.734 10 C 0.158 3.842 11 C 0.137 3.863 12 H 0.051 0.949 13 C -0.114 4.114 14 C -0.122 4.122 15 C 0.113 3.887 16 N -0.598 5.598 17 C 0.562 3.438 18 O -0.542 6.542 19 C 0.100 3.900 20 N -0.438 5.438 21 C 0.055 3.945 22 C -0.086 4.086 23 C -0.104 4.104 24 C -0.047 4.047 25 C -0.154 4.154 26 C 0.125 3.875 27 N -0.493 5.493 28 C 0.081 3.919 29 H 0.254 0.746 30 H 0.377 0.623 31 H 0.020 0.980 32 H -0.005 1.005 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.209 0.791 40 H 0.199 0.801 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 -31.955 -0.141 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.377 5.377 10 C 0.030 3.970 11 C 0.033 3.967 12 H 0.070 0.930 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.009 4.009 16 N -0.332 5.332 17 C 0.349 3.651 18 O -0.417 6.417 19 C -0.050 4.050 20 N -0.151 5.151 21 C -0.092 4.092 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.073 4.073 25 C -0.175 4.175 26 C -0.048 4.048 27 N -0.202 5.202 28 C -0.043 4.043 29 H 0.063 0.937 30 H 0.209 0.791 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.225 0.775 40 H 0.216 0.784 41 H 0.213 0.787 42 H 0.203 0.797 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.652 -30.513 0.097 32.319 hybrid contribution 0.711 0.750 -1.112 1.519 sum 11.363 -29.763 -1.016 31.874 Atomic orbital electron populations 1.69819 1.06497 1.26289 1.58920 1.25597 0.96559 1.01039 1.03031 0.85009 0.77896 0.79319 0.77101 1.19577 1.21701 1.20980 1.19579 0.91186 0.85356 1.42252 0.91606 1.42297 1.05523 1.00498 1.89430 1.20855 0.93991 0.85614 0.96551 1.21589 0.93030 0.82673 0.99375 0.93042 1.22563 1.00867 0.98622 0.93152 1.22871 0.97318 0.92818 1.02996 1.22627 0.97705 0.97203 0.83321 1.48475 1.50080 1.18495 1.16138 1.17949 0.79671 0.85020 0.82428 1.90850 1.63105 1.56461 1.31307 1.20956 0.98472 0.95208 0.90349 1.67518 1.17688 1.06883 1.23027 1.23428 0.93208 0.91271 1.01308 1.22999 0.96625 1.00717 0.90306 1.19377 0.98784 0.94672 0.98357 1.22016 0.94700 1.00550 0.90030 1.22508 0.99342 0.94476 1.01145 1.23850 0.89815 0.94818 0.96316 1.68249 1.19247 1.32628 1.00101 1.19669 0.97719 0.93591 0.93285 0.93667 0.79057 0.96202 0.98732 0.90928 0.90116 0.86706 0.90032 0.87510 0.91016 0.77476 0.78358 0.78705 0.79705 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.98 13.06 21.65 0.28 -61.70 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.98 49.15 29.55 68.60 2.03 51.17 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.25 -15.69 9.99 84.03 0.84 -14.85 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -42.61 5.42 -343.44 -1.86 -44.47 16 10 C 0.16 8.00 5.66 86.38 0.49 8.49 16 11 C 0.14 5.68 2.89 45.34 0.13 5.81 16 12 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 13 C -0.11 -3.75 6.23 31.78 0.20 -3.55 16 14 C -0.12 -2.82 7.07 31.91 0.23 -2.59 16 15 C 0.11 2.95 5.71 86.78 0.50 3.44 16 16 N -0.60 -22.02 3.07 -791.81 -2.43 -24.45 16 17 C 0.56 23.07 7.55 86.80 0.66 23.73 16 18 O -0.54 -27.18 14.41 -3.85 -0.06 -27.24 16 19 C 0.10 3.26 6.78 42.46 0.29 3.55 16 20 N -0.44 -10.44 6.71 -184.12 -1.24 -11.68 16 21 C 0.06 0.75 11.12 84.56 0.94 1.69 16 22 C -0.09 -0.90 9.93 22.68 0.23 -0.67 16 23 C -0.10 -1.87 5.75 -21.27 -0.12 -1.99 16 24 C -0.05 -0.49 9.94 22.48 0.22 -0.26 16 25 C -0.15 -1.82 10.03 22.17 0.22 -1.60 16 26 C 0.13 2.74 11.14 85.06 0.95 3.69 16 27 N -0.49 -16.46 8.49 -187.93 -1.60 -18.05 16 28 C 0.08 2.44 6.61 40.62 0.27 2.70 16 29 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.38 22.49 7.60 -92.71 -0.70 21.79 16 31 H 0.02 1.01 8.02 -2.39 -0.02 0.99 16 32 H -0.01 -0.30 6.90 -2.38 -0.02 -0.32 16 33 H 0.07 2.53 7.77 -2.39 -0.02 2.51 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 2.45 6.31 -2.39 -0.02 2.44 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 40 H 0.20 -0.08 8.06 -2.91 -0.02 -0.11 16 41 H 0.20 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 43 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -92.78 357.69 1.97 -90.81 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.34 Total: 21.83 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 6.50 Total: 23.77 kcal Atomic # 7 Polarization: -153.50 SS G_CDS: -6.84 Total: -160.34 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.17 kcal Total: -92.78 1.97 -90.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754611389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.765 kcal (2) G-P(sol) polarization free energy of solvation -92.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds