Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35686 * 116.99908 * 2 1 4 4 C 1.38895 * 119.61976 * 180.25683 * 3 2 1 5 5 C 1.39577 * 118.94631 * 180.25128 * 4 3 2 6 6 C 1.48159 * 120.89290 * 179.77904 * 5 4 3 7 7 O 1.21513 * 120.00177 * 359.71423 * 6 5 4 8 8 N 1.34777 * 119.99867 * 179.43719 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27157 * 8 6 5 10 10 H 1.08999 * 109.46845 * 325.00503 * 9 8 6 11 11 C 1.52995 * 109.47455 * 205.00257 * 9 8 6 12 12 C 1.50702 * 109.47148 * 65.00169 * 11 9 8 13 13 H 1.08003 * 119.99859 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00235 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99919 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47282 * 59.99933 * 16 14 12 18 18 H 1.48498 * 109.46760 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46953 * 299.99403 * 16 14 12 20 20 C 1.50697 * 109.46928 * 85.00210 * 9 8 6 21 21 C 1.38241 * 120.00139 * 39.73030 * 20 9 8 22 22 C 1.38230 * 120.00034 * 179.81376 * 21 20 9 23 23 C 1.38241 * 120.00126 * 0.39077 * 22 21 20 24 24 C 1.38233 * 119.99819 * 359.86101 * 23 22 21 25 25 C 1.38235 * 120.00064 * 359.95451 * 24 23 22 26 26 C 1.39972 * 118.21243 * 359.49987 * 5 4 3 27 27 C 1.37972 * 119.13550 * 0.25070 * 26 5 4 28 28 N 1.31919 * 120.97829 * 0.02562 * 27 26 5 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47096 * 300.00375 * 1 2 3 31 31 H 1.08998 * 109.47494 * 59.99919 * 1 2 3 32 32 H 1.08001 * 120.53404 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99727 * 0.28053 * 8 6 5 34 34 H 1.09000 * 109.47218 * 184.99988 * 11 9 8 35 35 H 1.09000 * 109.47293 * 305.00154 * 11 9 8 36 36 H 0.96998 * 120.00002 * 180.02562 * 15 14 12 37 37 H 1.07998 * 119.99235 * 359.97438 * 21 20 9 38 38 H 1.07999 * 119.99942 * 180.23022 * 22 21 20 39 39 H 1.07999 * 119.99588 * 179.83942 * 23 22 21 40 40 H 1.07996 * 120.00002 * 179.97438 * 24 23 22 41 41 H 1.08007 * 119.99885 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.42798 * 180.27641 * 26 5 4 43 43 H 1.08001 * 119.51348 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0054 5 6 4.0515 2.5235 0.0000 6 6 5.5284 2.6414 -0.0005 7 8 6.2178 1.6408 -0.0005 8 7 6.1072 3.8586 -0.0067 9 6 7.5675 3.9753 -0.0132 10 1 7.9992 3.1668 0.5768 11 6 7.9743 5.3209 0.5906 12 6 7.5779 5.3597 2.0440 13 1 7.0846 4.5098 2.4921 14 6 7.8439 6.4806 2.8015 15 7 8.4441 7.5158 2.2557 16 14 7.3531 6.5284 4.6032 17 1 8.0390 5.4317 5.3324 18 1 7.7479 7.8345 5.1893 19 1 5.8827 6.3571 4.7204 20 6 8.0720 3.8876 -1.4305 21 6 7.3780 4.5103 -2.4511 22 6 7.8429 4.4331 -3.7506 23 6 8.9975 3.7264 -4.0308 24 6 9.6886 3.0993 -3.0110 25 6 9.2258 3.1797 -1.7109 26 6 3.2394 3.6636 0.0000 27 6 1.8681 3.5116 -0.0001 28 7 1.3179 2.3126 0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 4.0231 0.3683 -0.0100 33 1 5.5568 4.6573 -0.0067 34 1 9.0538 5.4460 0.5050 35 1 7.4716 6.1263 0.0552 36 1 8.6316 8.3043 2.7887 37 1 6.4739 5.0593 -2.2326 38 1 7.3027 4.9227 -4.5473 39 1 9.3592 3.6639 -5.0465 40 1 10.5904 2.5469 -3.2299 41 1 9.7661 2.6901 -0.9141 42 1 3.6806 4.6494 -0.0004 43 1 1.2358 4.3871 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771629945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = -14.964757 kcal Electronic energy + Delta-G solvation = -26769.687720 eV Core-core repulsion = 22973.089985 eV Total energy + Delta-G solvation = -3796.597735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85817 -39.63900 -38.56541 -37.68075 -35.32818 -33.02029 -32.59423 -31.29752 -30.61425 -30.39121 -28.83167 -27.47779 -25.39121 -24.00969 -23.39079 -22.33664 -21.99497 -20.77988 -19.87448 -18.56856 -17.32964 -16.98112 -16.30889 -16.16574 -16.14805 -15.77950 -15.40267 -14.96928 -14.57345 -14.47869 -14.35782 -14.17493 -13.96041 -13.43108 -13.32512 -13.05011 -12.77052 -12.59203 -12.28065 -12.14212 -11.84560 -11.61709 -11.37776 -11.17737 -10.97699 -10.76282 -10.67658 -10.53296 -10.08415 -9.94355 -9.83656 -9.57078 -9.35604 -8.65792 -8.61500 -8.52875 -8.49515 -8.23091 -6.13407 -4.17529 0.70817 1.04946 1.73839 1.77177 2.84852 3.08812 3.26057 3.31513 3.34591 3.54522 3.84944 4.16038 4.20563 4.36308 4.69534 4.91545 4.97956 5.02195 5.12467 5.12874 5.23226 5.23706 5.23876 5.33700 5.41829 5.49551 5.60170 5.74855 5.86646 5.89944 6.02083 6.08252 6.20561 6.31094 6.39137 6.51311 6.75310 6.81083 6.82462 7.05115 7.06402 7.36710 7.43054 7.54386 7.66238 7.82646 7.94315 8.20030 8.53783 8.88167 9.48075 10.96912 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.004436 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.282546 B = 6311.123928 C = 8958.498091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.313 3.687 4 C -0.134 4.134 5 C -0.043 4.043 6 C 0.553 3.447 7 O -0.534 6.534 8 N -0.687 5.687 9 C 0.184 3.816 10 H 0.090 0.910 11 C 0.024 3.976 12 C -0.524 4.524 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.178 4.178 27 C 0.135 3.865 28 N -0.531 5.531 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.153 0.847 33 H 0.402 0.598 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -7.819 -9.224 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.134 3.866 4 C -0.156 4.156 5 C -0.054 4.054 6 C 0.338 3.662 7 O -0.412 6.412 8 N -0.337 5.337 9 C 0.080 3.920 10 H 0.108 0.892 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.074 4.074 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.198 4.198 27 C -0.020 4.020 28 N -0.255 5.255 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.238 0.762 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.086 -8.681 -9.168 16.802 hybrid contribution 0.128 0.823 1.043 1.335 sum -10.958 -7.858 -8.125 15.743 Atomic orbital electron populations 1.22852 0.77258 1.02882 1.02439 1.86255 1.22851 1.24324 1.87955 1.19656 0.89005 0.84776 0.93135 1.21124 0.91756 0.99249 1.03456 1.20310 0.94475 0.93118 0.97513 1.18035 0.86365 0.84333 0.77460 1.90752 1.64017 1.36511 1.49932 1.45897 1.08473 1.07148 1.72138 1.20333 0.77959 1.03130 0.90567 0.89195 1.19396 0.98022 0.88330 0.95546 1.21096 1.39382 1.01018 0.94737 0.92411 1.24972 0.94978 0.95602 0.98409 1.69945 1.41344 1.05139 1.36519 0.86662 0.79011 0.77254 0.85144 1.20174 1.21261 1.20216 1.20506 0.95018 0.95551 0.96342 1.20901 0.99885 0.99397 0.92450 1.21043 0.96886 0.99840 0.96491 1.21009 0.96246 0.99218 0.98720 1.21049 0.99786 1.00152 0.93047 1.21022 0.96356 0.98615 0.96572 1.22272 0.94881 0.99461 1.03218 1.22346 0.92602 0.93527 0.93503 1.67162 1.41260 0.98947 1.18180 0.88674 0.92280 0.92315 0.82931 0.76203 0.94526 0.95640 0.92741 0.86592 0.86691 0.86792 0.86540 0.86091 0.83605 0.81720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.87 10.47 -18.76 -0.20 -4.06 16 3 C 0.31 4.30 7.49 -17.16 -0.13 4.17 16 4 C -0.13 -1.97 9.61 -38.84 -0.37 -2.34 16 5 C -0.04 -0.65 5.91 -104.67 -0.62 -1.27 16 6 C 0.55 9.83 7.75 -12.19 -0.09 9.73 16 7 O -0.53 -11.11 16.10 5.35 0.09 -11.03 16 8 N -0.69 -12.02 3.98 -55.78 -0.22 -12.24 16 9 C 0.18 3.63 2.12 -69.09 -0.15 3.48 16 10 H 0.09 1.94 7.44 -51.93 -0.39 1.55 16 11 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 12 C -0.52 -13.50 8.84 -34.44 -0.30 -13.81 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 21 C -0.11 -1.77 9.33 -39.58 -0.37 -2.13 16 22 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 23 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.11 -1.82 9.67 -39.58 -0.38 -2.21 16 26 C -0.18 -2.17 9.61 -39.03 -0.38 -2.55 16 27 C 0.14 1.51 11.17 -17.61 -0.20 1.32 16 28 N -0.53 -6.80 9.18 -13.38 -0.12 -6.92 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.15 2.25 7.74 -52.49 -0.41 1.85 16 33 H 0.40 6.30 6.74 -40.82 -0.28 6.03 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.12 1.75 7.71 -52.49 -0.40 1.34 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.12 1.96 8.04 -52.48 -0.42 1.54 16 42 H 0.15 1.52 6.53 -52.49 -0.34 1.18 16 43 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -31.52 373.87 -8.55 -40.08 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.58 Total: 7.81 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.87 Total: -10.68 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.39 Total: -43.42 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.11 Total: -15.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.52 -8.55 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771629945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.112 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds