Wall clock time and date at job start Tue Mar 31 2020 14:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35686 * 116.99908 * 2 1 4 4 C 1.38895 * 119.61976 * 180.25683 * 3 2 1 5 5 C 1.39577 * 118.94631 * 180.25128 * 4 3 2 6 6 C 1.48159 * 120.89290 * 179.77904 * 5 4 3 7 7 O 1.21513 * 120.00177 * 359.71423 * 6 5 4 8 8 N 1.34777 * 119.99867 * 179.43719 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27157 * 8 6 5 10 10 H 1.08999 * 109.46845 * 325.00503 * 9 8 6 11 11 C 1.52995 * 109.47455 * 205.00257 * 9 8 6 12 12 C 1.50702 * 109.47148 * 65.00169 * 11 9 8 13 13 H 1.08003 * 119.99859 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00235 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99919 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47282 * 59.99933 * 16 14 12 18 18 H 1.48498 * 109.46760 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46953 * 299.99403 * 16 14 12 20 20 C 1.50697 * 109.46928 * 85.00210 * 9 8 6 21 21 C 1.38241 * 120.00139 * 39.73030 * 20 9 8 22 22 C 1.38230 * 120.00034 * 179.81376 * 21 20 9 23 23 C 1.38241 * 120.00126 * 0.39077 * 22 21 20 24 24 C 1.38233 * 119.99819 * 359.86101 * 23 22 21 25 25 C 1.38235 * 120.00064 * 359.95451 * 24 23 22 26 26 C 1.39972 * 118.21243 * 359.49987 * 5 4 3 27 27 C 1.37972 * 119.13550 * 0.25070 * 26 5 4 28 28 N 1.31919 * 120.97829 * 0.02562 * 27 26 5 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47096 * 300.00375 * 1 2 3 31 31 H 1.08998 * 109.47494 * 59.99919 * 1 2 3 32 32 H 1.08001 * 120.53404 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99727 * 0.28053 * 8 6 5 34 34 H 1.09000 * 109.47218 * 184.99988 * 11 9 8 35 35 H 1.09000 * 109.47293 * 305.00154 * 11 9 8 36 36 H 0.96998 * 120.00002 * 180.02562 * 15 14 12 37 37 H 1.07998 * 119.99235 * 359.97438 * 21 20 9 38 38 H 1.07999 * 119.99942 * 180.23022 * 22 21 20 39 39 H 1.07999 * 119.99588 * 179.83942 * 23 22 21 40 40 H 1.07996 * 120.00002 * 179.97438 * 24 23 22 41 41 H 1.08007 * 119.99885 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.42798 * 180.27641 * 26 5 4 43 43 H 1.08001 * 119.51348 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0054 5 6 4.0515 2.5235 0.0000 6 6 5.5284 2.6414 -0.0005 7 8 6.2178 1.6408 -0.0005 8 7 6.1072 3.8586 -0.0067 9 6 7.5675 3.9753 -0.0132 10 1 7.9992 3.1668 0.5768 11 6 7.9743 5.3209 0.5906 12 6 7.5779 5.3597 2.0440 13 1 7.0846 4.5098 2.4921 14 6 7.8439 6.4806 2.8015 15 7 8.4441 7.5158 2.2557 16 14 7.3531 6.5284 4.6032 17 1 8.0390 5.4317 5.3324 18 1 7.7479 7.8345 5.1893 19 1 5.8827 6.3571 4.7204 20 6 8.0720 3.8876 -1.4305 21 6 7.3780 4.5103 -2.4511 22 6 7.8429 4.4331 -3.7506 23 6 8.9975 3.7264 -4.0308 24 6 9.6886 3.0993 -3.0110 25 6 9.2258 3.1797 -1.7109 26 6 3.2394 3.6636 0.0000 27 6 1.8681 3.5116 -0.0001 28 7 1.3179 2.3126 0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 4.0231 0.3683 -0.0100 33 1 5.5568 4.6573 -0.0067 34 1 9.0538 5.4460 0.5050 35 1 7.4716 6.1263 0.0552 36 1 8.6316 8.3043 2.7887 37 1 6.4739 5.0593 -2.2326 38 1 7.3027 4.9227 -4.5473 39 1 9.3592 3.6639 -5.0465 40 1 10.5904 2.5469 -3.2299 41 1 9.7661 2.6901 -0.9141 42 1 3.6806 4.6494 -0.0004 43 1 1.2358 4.3871 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771629945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:44 Heat of formation + Delta-G solvation = -34.638604 kcal Electronic energy + Delta-G solvation = -26770.540842 eV Core-core repulsion = 22973.089985 eV Total energy + Delta-G solvation = -3797.450857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94721 -40.94139 -39.78381 -38.71557 -36.89294 -34.80629 -33.92897 -32.53201 -31.75312 -31.52984 -30.52826 -28.28302 -27.00573 -25.32821 -24.39813 -23.79983 -23.36221 -22.04585 -21.29533 -19.76353 -18.64719 -18.37927 -17.79085 -17.35696 -17.07683 -17.04176 -16.70895 -16.38128 -16.29282 -15.65650 -15.61137 -15.15539 -15.03741 -14.73511 -14.52756 -14.33766 -14.18960 -14.07174 -13.68457 -13.45610 -13.20318 -12.92397 -12.68517 -12.65180 -12.45863 -12.21207 -12.16272 -11.88743 -11.60940 -11.40831 -11.33665 -11.07434 -10.76239 -10.57128 -10.09273 -9.75739 -9.62716 -9.53414 -8.19835 -6.30091 -0.42066 0.05792 0.50042 0.55984 1.40833 1.42834 1.50264 1.80123 1.84275 2.28437 2.40387 2.74627 2.96365 3.14372 3.26919 3.53115 3.87593 3.93026 3.96447 4.02048 4.08513 4.20874 4.32358 4.42556 4.44768 4.45288 4.60664 4.63824 4.71680 4.75227 4.76985 4.79100 4.99536 5.11012 5.18242 5.20739 5.25874 5.42415 5.56735 5.60889 5.64301 5.77806 5.86934 6.14038 6.15601 6.20003 6.52719 6.68067 6.82221 7.13333 7.39090 8.90481 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.004436 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.282546 B = 6311.123928 C = 8958.498091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.309 3.691 4 C -0.151 4.151 5 C -0.057 4.057 6 C 0.553 3.447 7 O -0.573 6.573 8 N -0.681 5.681 9 C 0.199 3.801 10 H 0.061 0.939 11 C 0.039 3.961 12 C -0.532 4.532 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.924 5.924 16 Si 0.952 3.048 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.172 4.172 27 C 0.146 3.854 28 N -0.531 5.531 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.411 0.589 34 H 0.006 0.994 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.113 0.887 42 H 0.165 0.835 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -7.297 -10.365 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.228 6.228 3 C 0.131 3.869 4 C -0.173 4.173 5 C -0.068 4.068 6 C 0.340 3.660 7 O -0.453 6.453 8 N -0.330 5.330 9 C 0.095 3.905 10 H 0.080 0.920 11 C 0.001 3.999 12 C -0.570 4.570 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.563 5.563 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.193 4.193 27 C -0.009 4.009 28 N -0.255 5.255 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.249 0.751 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.132 0.868 42 H 0.182 0.818 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.089 -8.164 -10.312 18.555 hybrid contribution 0.720 0.639 1.331 1.642 sum -12.369 -7.525 -8.982 17.037 Atomic orbital electron populations 1.23127 0.75263 1.04845 1.02639 1.86243 1.24855 1.23946 1.87709 1.19665 0.88676 0.85528 0.93025 1.21065 0.92518 0.98822 1.04857 1.20086 0.92630 0.94443 0.99610 1.18448 0.87664 0.83550 0.76327 1.90721 1.65285 1.37630 1.51712 1.45736 1.07599 1.07712 1.71987 1.19825 0.79249 0.99792 0.91668 0.92050 1.19131 0.95909 0.90087 0.94726 1.21364 1.38939 1.00714 0.96013 0.92893 1.25711 0.94975 0.95293 1.02361 1.70052 1.42503 1.05722 1.38039 0.85703 0.79188 0.77102 0.80268 1.20365 1.20842 1.18953 1.20406 0.96285 0.97782 0.95585 1.21091 1.00231 0.99526 0.93087 1.21447 0.97135 0.99364 0.96299 1.21481 0.95482 0.97557 1.00154 1.21389 1.00676 1.00029 0.92102 1.21187 0.96563 0.99432 0.97941 1.22503 0.95299 0.99215 1.02268 1.23030 0.92516 0.94189 0.91155 1.67294 1.41075 0.99181 1.17979 0.85963 0.92160 0.91920 0.84203 0.75134 0.97544 0.96482 0.92665 0.85856 0.83537 0.83150 0.83882 0.86848 0.81783 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -7.83 10.47 -90.05 -0.94 -8.77 16 3 C 0.31 8.27 7.49 84.80 0.63 8.91 16 4 C -0.15 -4.51 9.61 22.75 0.22 -4.29 16 5 C -0.06 -1.71 5.91 -19.90 -0.12 -1.83 16 6 C 0.55 20.38 7.75 86.88 0.67 21.06 16 7 O -0.57 -25.22 16.10 -3.76 -0.06 -25.28 16 8 N -0.68 -24.56 3.98 -448.70 -1.79 -26.35 16 9 C 0.20 8.30 2.12 44.24 0.09 8.40 16 10 H 0.06 2.87 7.44 -2.39 -0.02 2.85 16 11 C 0.04 1.89 4.50 29.85 0.13 2.02 16 12 C -0.53 -28.15 8.84 25.60 0.23 -27.92 16 13 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 14 C 0.02 0.85 5.46 84.65 0.46 1.31 16 15 N -0.92 -52.62 13.29 21.45 0.28 -52.34 16 16 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 C -0.10 -3.72 4.91 -19.86 -0.10 -3.82 16 21 C -0.12 -3.92 9.33 22.27 0.21 -3.71 16 22 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 23 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 24 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 25 C -0.13 -4.67 9.67 22.27 0.22 -4.46 16 26 C -0.17 -3.91 9.61 22.63 0.22 -3.70 16 27 C 0.15 2.84 11.17 84.62 0.94 3.79 16 28 N -0.53 -12.46 9.18 -309.14 -2.84 -15.30 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 31 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.14 4.42 7.74 -2.91 -0.02 4.40 16 33 H 0.41 12.99 6.74 -92.71 -0.62 12.36 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 37 H 0.12 3.66 7.71 -2.91 -0.02 3.64 16 38 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.11 3.98 8.04 -2.91 -0.02 3.96 16 42 H 0.16 3.05 6.53 -2.91 -0.02 3.03 16 43 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -70.35 373.87 2.75 -67.60 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.41 Total: 27.80 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.66 Total: -11.93 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -4.34 Total: -93.98 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.00 Total: -34.05 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.35 2.75 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771629945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.962 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds