Wall clock time and date at job start Tue Mar 31 2020 14:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34719 * 116.99924 * 2 1 4 4 O 1.21468 * 119.99617 * 0.02562 * 3 2 1 5 5 C 1.47719 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.39636 * 120.15027 * 180.02562 * 5 3 2 7 7 C 1.37940 * 119.84902 * 180.02562 * 6 5 3 8 8 C 1.38366 * 120.14861 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.84949 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46735 * 89.99910 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.38829 * 119.99919 * 179.97438 * 11 10 9 13 13 C 1.39795 * 119.58136 * 359.72864 * 12 11 10 14 14 C 1.38601 * 119.48613 * 179.76537 * 13 12 11 15 15 C 1.38387 * 118.67894 * 0.49854 * 14 13 12 16 16 C 1.40556 * 119.15266 * 359.74977 * 15 14 13 17 17 C 1.41320 * 119.78241 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00035 * 359.97438 * 17 16 15 19 19 C 1.40020 * 119.99490 * 179.97438 * 17 16 15 20 20 N 1.30746 * 120.00362 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46794 * 60.00297 * 21 19 17 23 23 H 1.48493 * 109.47200 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47312 * 300.00631 * 21 19 17 25 25 N 1.31956 * 119.58508 * 180.02562 * 12 11 10 26 26 C 1.38369 * 120.30835 * 0.23460 * 8 7 6 27 27 C 1.37952 * 120.14300 * 359.48445 * 26 8 7 28 28 H 1.09002 * 109.47286 * 299.99765 * 1 2 3 29 29 H 1.09003 * 109.47520 * 59.99671 * 1 2 3 30 30 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.07153 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.92365 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46797 * 330.00258 * 9 8 7 34 34 H 1.08992 * 109.47518 * 210.00255 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00410 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00591 * 10 9 8 37 37 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 38 38 H 1.07991 * 120.25802 * 0.02562 * 13 12 11 39 39 H 1.07998 * 120.65905 * 180.24684 * 14 13 12 40 40 H 1.08007 * 120.42047 * 179.76847 * 15 14 13 41 41 H 0.97004 * 119.99805 * 180.02562 * 20 19 17 42 42 H 1.07997 * 119.93078 * 179.71937 * 26 8 7 43 43 H 1.07997 * 120.07488 * 180.25281 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5387 1.2777 0.0006 6 6 4.1758 2.5203 0.0011 7 6 5.5537 2.5853 0.0011 8 6 6.3043 1.4228 0.0000 9 6 7.8092 1.5017 -0.0005 10 6 8.3191 1.5275 1.4418 11 7 9.7820 1.6048 1.4413 12 6 10.4756 1.6410 2.6433 13 6 9.7690 1.6090 3.8491 14 6 10.4637 1.6403 5.0480 15 6 11.8452 1.7133 5.0133 16 6 12.4980 1.7479 3.7691 17 6 13.9083 1.8218 3.7182 18 1 14.4809 1.8520 4.6334 19 6 14.5633 1.8560 2.4810 20 7 13.8701 1.8199 1.3731 21 14 16.4275 1.9545 2.4136 22 1 17.0107 0.7713 3.0958 23 1 16.8711 1.9780 0.9967 24 1 16.8828 3.1929 3.0950 25 7 11.7933 1.7111 2.6333 26 6 5.6795 0.1883 -0.0059 27 6 4.3023 0.1088 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5911 3.4283 0.0007 32 1 6.0477 3.5456 0.0011 33 1 8.1252 2.4099 -0.5139 34 1 8.2185 0.6324 -0.5151 35 1 7.9098 2.3969 1.9564 36 1 8.0031 0.6193 1.9551 37 1 10.2660 1.6314 0.6011 38 1 8.6904 1.5560 3.8464 39 1 9.9371 1.6124 5.9905 40 1 12.4144 1.7430 5.9307 41 1 14.3240 1.8432 0.5161 42 1 6.2713 -0.7151 -0.0113 43 1 3.8158 -0.8554 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771657771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:47 Heat of formation + Delta-G solvation = -26.036619 kcal Electronic energy + Delta-G solvation = -25292.267433 eV Core-core repulsion = 21495.189586 eV Total energy + Delta-G solvation = -3797.077847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85931 -39.35763 -38.23569 -36.76585 -35.68821 -33.61690 -32.72457 -31.31461 -30.45601 -29.75201 -28.37420 -27.28961 -25.34428 -24.21475 -22.97172 -22.31734 -21.39617 -20.71302 -20.30920 -18.34590 -17.43654 -17.35575 -16.67512 -16.39258 -15.58761 -15.55567 -14.95890 -14.91091 -14.64270 -14.25629 -14.21852 -13.82916 -13.76038 -13.57753 -13.32608 -12.97714 -12.72730 -12.51415 -12.36289 -12.02742 -11.74376 -11.55939 -11.50222 -11.23838 -11.16786 -11.01098 -11.00191 -10.82932 -10.62371 -10.42293 -9.92890 -9.47891 -9.27552 -9.08738 -8.88429 -7.90467 -7.50817 -6.52334 -6.32406 -4.46786 0.39195 1.10170 2.23412 2.34498 2.89557 3.10435 3.13297 3.24318 3.31053 3.47602 3.98628 4.07376 4.38122 4.54075 4.67671 4.73768 4.81025 4.81289 4.84624 4.99119 5.08520 5.14057 5.19816 5.31443 5.46547 5.68321 5.72996 5.88243 5.94671 5.98626 6.10399 6.11297 6.12143 6.16755 6.37473 6.57204 6.58658 6.86138 6.90148 6.94449 7.25517 7.40534 7.60160 7.81529 7.92419 8.16776 8.36265 8.67766 8.80739 9.12245 10.24898 10.40715 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.001909 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.773043 B =14662.300094 C =15154.192932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.509 6.509 5 C -0.139 4.139 6 C -0.051 4.051 7 C -0.126 4.126 8 C -0.032 4.032 9 C -0.100 4.100 10 C 0.150 3.850 11 N -0.740 5.740 12 C 0.410 3.590 13 C -0.366 4.366 14 C -0.032 4.032 15 C -0.316 4.316 16 C 0.292 3.708 17 C -0.435 4.435 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.717 5.717 21 Si 0.905 3.095 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.266 1.266 25 N -0.531 5.531 26 C -0.128 4.128 27 C -0.059 4.059 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.270 0.730 42 H 0.134 0.866 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.562 -3.389 -7.096 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.140 4.140 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.033 4.033 9 C -0.138 4.138 10 C 0.024 3.976 11 N -0.378 5.378 12 C 0.171 3.829 13 C -0.392 4.392 14 C -0.057 4.057 15 C -0.339 4.339 16 C 0.165 3.835 17 C -0.467 4.467 18 H 0.101 0.899 19 C -0.154 4.154 20 N -0.338 5.338 21 Si 0.730 3.270 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.190 1.190 25 N -0.252 5.252 26 C -0.146 4.146 27 C -0.077 4.077 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.512 -3.088 -8.016 21.319 hybrid contribution 0.197 0.072 0.503 0.545 sum -19.315 -3.015 -7.513 20.943 Atomic orbital electron populations 1.23292 0.75903 1.03836 1.02679 1.86547 1.23626 1.32705 1.84342 1.21285 0.89241 0.81383 0.72478 1.90830 1.66856 1.36057 1.46070 1.19054 0.88692 0.95236 1.10997 1.21245 0.94581 0.96621 0.94466 1.21095 0.93017 0.98816 1.01493 1.20139 0.95830 0.93144 0.94176 1.20921 0.90240 1.04289 0.98302 1.20950 0.81687 1.00911 0.94078 1.44097 1.03499 1.84004 1.06164 1.18502 0.90066 0.89939 0.84425 1.20607 0.97628 1.28484 0.92531 1.20601 0.94101 0.95222 0.95744 1.21537 0.93931 1.20421 0.98033 1.18193 0.93091 0.86579 0.85645 1.19545 0.90414 1.43454 0.93261 0.89943 1.26044 1.00184 0.93579 0.95551 1.70142 1.36480 1.29203 0.98017 0.86437 0.82789 0.79840 0.77975 1.19017 1.20369 1.19021 1.68202 1.02402 1.24969 1.29661 1.21139 0.94180 0.97869 1.01434 1.21438 0.93814 0.97825 0.94604 0.91752 0.91812 0.87889 0.84535 0.84662 0.89804 0.89790 0.92885 0.92873 0.76970 0.89243 0.88956 0.88717 0.91918 0.84772 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.36 9.82 -40.54 -0.40 -3.76 16 3 C 0.51 5.75 7.90 34.60 0.27 6.02 16 4 O -0.51 -6.84 16.14 -19.24 -0.31 -7.15 16 5 C -0.14 -1.46 5.87 -104.98 -0.62 -2.08 16 6 C -0.05 -0.52 9.60 -39.17 -0.38 -0.90 16 7 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 8 C -0.03 -0.33 5.14 -104.52 -0.54 -0.86 16 9 C -0.10 -1.08 5.45 -27.88 -0.15 -1.24 16 10 C 0.15 2.18 4.87 -4.04 -0.02 2.16 16 11 N -0.74 -14.25 5.72 -60.39 -0.35 -14.59 16 12 C 0.41 9.93 7.65 -155.32 -1.19 8.75 16 13 C -0.37 -8.46 9.34 -38.87 -0.36 -8.82 16 14 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 15 C -0.32 -8.04 9.83 -38.65 -0.38 -8.42 16 16 C 0.29 8.15 6.55 -85.00 -0.56 7.59 16 17 C -0.43 -11.78 9.14 -37.74 -0.34 -12.12 16 18 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 19 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 20 N -0.72 -18.90 11.46 55.55 0.64 -18.27 16 21 Si 0.91 18.66 29.56 -169.99 -5.02 13.63 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 N -0.53 -14.59 7.89 -10.33 -0.08 -14.67 16 26 C -0.13 -1.20 9.68 -39.64 -0.38 -1.59 16 27 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.14 1.32 7.65 -52.49 -0.40 0.91 16 32 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.05 0.80 7.91 -51.93 -0.41 0.39 16 36 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 37 H 0.40 7.48 8.59 -40.82 -0.35 7.13 16 38 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.09 2.24 8.06 -52.48 -0.42 1.81 16 41 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.14 1.04 7.61 -52.49 -0.40 0.64 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.02 373.74 -10.39 -42.41 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.67 Total: 8.94 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -4.83 Total: -12.18 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.21 Total: -47.53 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.71 Total: -10.91 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.02 -10.39 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771657771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.377 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds