Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34719 * 116.99924 * 2 1 4 4 O 1.21468 * 119.99617 * 0.02562 * 3 2 1 5 5 C 1.47719 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.39636 * 120.15027 * 180.02562 * 5 3 2 7 7 C 1.37940 * 119.84902 * 180.02562 * 6 5 3 8 8 C 1.38366 * 120.14861 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.84949 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46735 * 89.99910 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.38829 * 119.99919 * 179.97438 * 11 10 9 13 13 C 1.39795 * 119.58136 * 359.72864 * 12 11 10 14 14 C 1.38601 * 119.48613 * 179.76537 * 13 12 11 15 15 C 1.38387 * 118.67894 * 0.49854 * 14 13 12 16 16 C 1.40556 * 119.15266 * 359.74977 * 15 14 13 17 17 C 1.41320 * 119.78241 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00035 * 359.97438 * 17 16 15 19 19 C 1.40020 * 119.99490 * 179.97438 * 17 16 15 20 20 N 1.30746 * 120.00362 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46794 * 60.00297 * 21 19 17 23 23 H 1.48493 * 109.47200 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47312 * 300.00631 * 21 19 17 25 25 N 1.31956 * 119.58508 * 180.02562 * 12 11 10 26 26 C 1.38369 * 120.30835 * 0.23460 * 8 7 6 27 27 C 1.37952 * 120.14300 * 359.48445 * 26 8 7 28 28 H 1.09002 * 109.47286 * 299.99765 * 1 2 3 29 29 H 1.09003 * 109.47520 * 59.99671 * 1 2 3 30 30 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.07153 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.92365 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46797 * 330.00258 * 9 8 7 34 34 H 1.08992 * 109.47518 * 210.00255 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00410 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00591 * 10 9 8 37 37 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 38 38 H 1.07991 * 120.25802 * 0.02562 * 13 12 11 39 39 H 1.07998 * 120.65905 * 180.24684 * 14 13 12 40 40 H 1.08007 * 120.42047 * 179.76847 * 15 14 13 41 41 H 0.97004 * 119.99805 * 180.02562 * 20 19 17 42 42 H 1.07997 * 119.93078 * 179.71937 * 26 8 7 43 43 H 1.07997 * 120.07488 * 180.25281 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5387 1.2777 0.0006 6 6 4.1758 2.5203 0.0011 7 6 5.5537 2.5853 0.0011 8 6 6.3043 1.4228 0.0000 9 6 7.8092 1.5017 -0.0005 10 6 8.3191 1.5275 1.4418 11 7 9.7820 1.6048 1.4413 12 6 10.4756 1.6410 2.6433 13 6 9.7690 1.6090 3.8491 14 6 10.4637 1.6403 5.0480 15 6 11.8452 1.7133 5.0133 16 6 12.4980 1.7479 3.7691 17 6 13.9083 1.8218 3.7182 18 1 14.4809 1.8520 4.6334 19 6 14.5633 1.8560 2.4810 20 7 13.8701 1.8199 1.3731 21 14 16.4275 1.9545 2.4136 22 1 17.0107 0.7713 3.0958 23 1 16.8711 1.9780 0.9967 24 1 16.8828 3.1929 3.0950 25 7 11.7933 1.7111 2.6333 26 6 5.6795 0.1883 -0.0059 27 6 4.3023 0.1088 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5911 3.4283 0.0007 32 1 6.0477 3.5456 0.0011 33 1 8.1252 2.4099 -0.5139 34 1 8.2185 0.6324 -0.5151 35 1 7.9098 2.3969 1.9564 36 1 8.0031 0.6193 1.9551 37 1 10.2660 1.6314 0.6011 38 1 8.6904 1.5560 3.8464 39 1 9.9371 1.6124 5.9905 40 1 12.4144 1.7430 5.9307 41 1 14.3240 1.8432 0.5161 42 1 6.2713 -0.7151 -0.0113 43 1 3.8158 -0.8554 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771657771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = -42.548668 kcal Electronic energy + Delta-G solvation = -25292.983449 eV Core-core repulsion = 21495.189586 eV Total energy + Delta-G solvation = -3797.793863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65990 -40.28157 -39.91666 -37.59342 -37.08337 -35.31441 -34.00772 -32.26881 -32.05391 -31.20431 -29.49640 -28.20417 -27.22199 -25.26483 -23.72353 -23.58324 -22.94074 -22.07090 -21.54121 -19.24718 -19.11613 -18.24740 -17.99498 -17.43166 -16.71904 -16.57975 -16.45833 -16.23397 -15.84012 -15.62811 -15.33028 -15.05297 -14.70460 -14.51291 -14.50009 -14.25057 -14.03754 -13.87638 -13.56953 -13.07445 -12.89818 -12.77018 -12.70183 -12.63016 -12.47804 -12.46289 -12.15267 -11.95165 -11.86112 -11.74220 -11.66567 -11.23981 -10.63585 -10.01240 -9.90055 -9.81222 -9.42902 -8.27691 -8.21052 -6.45855 -0.41203 0.36532 1.08570 1.36129 1.40580 1.43261 1.54778 1.61173 1.64782 2.26865 2.59019 2.79109 2.94578 3.61242 3.79137 3.90742 3.97073 4.05879 4.12944 4.18626 4.28105 4.31347 4.36292 4.40272 4.47394 4.59423 4.68352 4.74873 4.83000 4.93742 4.98849 5.02285 5.06418 5.07364 5.13672 5.18090 5.24999 5.35306 5.40239 5.56779 5.73567 5.82858 5.98424 6.08706 6.24855 6.57574 6.60005 6.85974 6.97942 7.24752 8.36223 8.53014 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.001909 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.773043 B =14662.300094 C =15154.192932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.539 6.539 5 C -0.151 4.151 6 C -0.059 4.059 7 C -0.128 4.128 8 C -0.038 4.038 9 C -0.086 4.086 10 C 0.149 3.851 11 N -0.733 5.733 12 C 0.394 3.606 13 C -0.367 4.367 14 C -0.031 4.031 15 C -0.345 4.345 16 C 0.258 3.742 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.026 3.974 20 N -0.750 5.750 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.261 1.261 25 N -0.563 5.563 26 C -0.128 4.128 27 C -0.054 4.054 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.396 0.604 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.277 0.723 42 H 0.151 0.849 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.130 -4.204 -7.543 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.431 6.431 5 C -0.152 4.152 6 C -0.077 4.077 7 C -0.146 4.146 8 C -0.039 4.039 9 C -0.124 4.124 10 C 0.024 3.976 11 N -0.369 5.369 12 C 0.153 3.847 13 C -0.393 4.393 14 C -0.055 4.055 15 C -0.368 4.368 16 C 0.131 3.869 17 C -0.504 4.504 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.372 5.372 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.185 1.185 25 N -0.286 5.286 26 C -0.146 4.146 27 C -0.072 4.072 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.164 0.836 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.230 0.770 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.169 0.831 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.136 -3.921 -8.476 22.196 hybrid contribution 0.161 0.285 0.637 0.716 sum -19.975 -3.636 -7.839 21.764 Atomic orbital electron populations 1.23603 0.74223 1.05985 1.02636 1.86536 1.25304 1.31654 1.83784 1.21461 0.89559 0.81471 0.71727 1.90810 1.67520 1.37048 1.47691 1.19206 0.88600 0.95894 1.11526 1.21328 0.94864 0.96769 0.94788 1.21230 0.92862 0.99379 1.01084 1.20102 0.95197 0.93622 0.94954 1.20770 0.90686 1.05133 0.95783 1.21143 0.78826 1.00785 0.96803 1.44269 1.05230 1.82734 1.04676 1.18969 0.89730 0.89437 0.86557 1.20944 0.98978 1.27240 0.92135 1.21008 0.93500 0.93582 0.97456 1.21688 0.95218 1.22234 0.97627 1.18676 0.94060 0.87352 0.86847 1.19905 0.90897 1.45214 0.94378 0.89646 1.26934 1.05380 0.92622 0.94622 1.70230 1.38721 1.29585 0.98664 0.85232 0.75927 0.79890 0.78404 1.18482 1.19218 1.18548 1.68187 1.04013 1.26389 1.30004 1.21354 0.94362 0.98215 1.00635 1.21617 0.93774 0.98132 0.93721 0.91939 0.91793 0.84661 0.84557 0.83613 0.89195 0.88850 0.93023 0.92716 0.76987 0.86577 0.85485 0.88068 0.91283 0.83139 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.25 9.82 -56.29 -0.55 -6.80 16 3 C 0.51 11.15 7.90 70.33 0.56 11.71 16 4 O -0.54 -14.47 16.14 19.94 0.32 -14.15 16 5 C -0.15 -3.02 5.87 -20.10 -0.12 -3.14 16 6 C -0.06 -1.16 9.60 22.54 0.22 -0.95 16 7 C -0.13 -2.32 9.68 22.23 0.22 -2.10 16 8 C -0.04 -0.69 5.14 -19.80 -0.10 -0.79 16 9 C -0.09 -1.69 5.45 29.85 0.16 -1.53 16 10 C 0.15 4.08 4.87 86.38 0.42 4.50 16 11 N -0.73 -27.70 5.72 -344.98 -1.97 -29.67 16 12 C 0.39 19.04 7.65 133.42 1.02 20.06 16 13 C -0.37 -16.52 9.34 22.73 0.21 -16.31 16 14 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 15 C -0.34 -17.77 9.83 22.87 0.22 -17.54 16 16 C 0.26 14.77 6.55 40.18 0.26 15.04 16 17 C -0.47 -26.29 9.14 23.46 0.21 -26.07 16 18 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 19 C 0.03 1.36 5.50 85.29 0.47 1.83 16 20 N -0.75 -40.22 11.46 21.84 0.25 -39.97 16 21 Si 0.99 38.46 29.56 68.60 2.03 40.49 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 N -0.56 -31.58 7.89 -186.58 -1.47 -33.05 16 26 C -0.13 -2.09 9.68 22.23 0.22 -1.87 16 27 C -0.05 -0.90 9.62 22.54 0.22 -0.68 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.14 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.14 2.61 7.65 -2.91 -0.02 2.59 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.05 1.45 7.91 -2.39 -0.02 1.43 16 36 H 0.05 1.51 7.93 -2.39 -0.02 1.49 16 37 H 0.40 14.84 8.59 -92.71 -0.80 14.04 16 38 H 0.12 4.51 6.68 -2.92 -0.02 4.49 16 39 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.28 13.38 8.29 -92.71 -0.77 12.61 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.16 1.95 7.61 -2.91 -0.02 1.93 16 Total: -1.00 -70.52 373.74 4.45 -66.07 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.24 Total: 34.62 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 5.61 Total: -17.54 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -3.20 Total: -102.70 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.23 Total: -20.95 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -70.52 4.45 -66.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771657771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.522 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds