Wall clock time and date at job start Tue Mar 31 2020 15:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48506 * 109.47382 * 269.99698 * 3 2 1 5 5 H 1.48497 * 109.47458 * 30.00149 * 3 2 1 6 6 H 1.48502 * 109.47300 * 149.99980 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21489 * 120.00266 * 359.97438 * 17 16 15 19 19 C 1.48387 * 119.99810 * 179.97438 * 17 16 15 20 20 C 1.40208 * 119.21801 * 179.97438 * 19 17 16 21 21 C 1.36642 * 119.90391 * 179.97438 * 20 19 17 22 22 C 1.40549 * 118.11170 * 359.97438 * 21 20 19 23 23 C 1.40410 * 122.06941 * 180.02562 * 22 21 20 24 24 N 1.31249 * 119.87600 * 179.97438 * 23 22 21 25 25 C 1.32598 * 122.68117 * 0.03783 * 24 23 22 26 26 C 1.36098 * 121.99540 * 359.96366 * 25 24 23 27 27 C 1.40944 * 118.76731 * 0.02562 * 26 25 24 28 28 N 1.31977 * 119.21852 * 359.72510 * 19 17 16 29 29 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 31 31 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 32 32 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 33 33 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 34 34 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 35 35 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 36 36 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 37 37 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 38 38 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 39 39 H 1.08004 * 120.04848 * 0.02562 * 20 19 17 40 40 H 1.08005 * 120.94324 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.05656 * 359.97132 * 23 22 21 42 42 H 1.08004 * 118.99534 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.61352 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3739 -3.9564 19 6 4.4507 -6.5404 -3.3459 20 6 5.1214 -6.7495 -4.5593 21 6 5.7490 -7.9403 -4.7944 22 6 5.6970 -8.9253 -3.7931 23 6 6.3130 -10.1777 -3.9467 24 7 6.2377 -11.0658 -2.9833 25 6 5.5946 -10.8364 -1.8466 26 6 4.9650 -9.6553 -1.6000 27 6 5.0002 -8.6490 -2.5863 28 7 4.4105 -7.4698 -2.4097 29 1 -0.4850 0.8401 0.0004 30 1 -0.4235 -1.8601 1.0682 31 1 -0.6985 -2.3866 -0.6197 32 1 0.0111 -4.1106 1.8169 33 1 -1.2711 -4.3837 0.5897 34 1 0.3273 -4.9724 -1.1133 35 1 1.1302 -5.6534 0.3396 36 1 1.6415 -3.6192 -2.4206 37 1 3.1751 -2.9297 -1.8368 38 1 3.0990 -5.7163 -1.2673 39 1 5.1427 -5.9702 -5.3067 40 1 6.2702 -8.1195 -5.7232 41 1 6.8476 -10.4097 -4.8560 42 1 5.5699 -11.6103 -1.0937 43 1 4.4481 -9.4922 -0.6659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028164792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:33 Heat of formation + Delta-G solvation = 57.420251 kcal Electronic energy + Delta-G solvation = -26475.518256 eV Core-core repulsion = 22714.352121 eV Total energy + Delta-G solvation = -3761.166134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62941 -39.70975 -38.14605 -37.50141 -34.56082 -33.92998 -32.51302 -32.05361 -30.83576 -29.69158 -28.74696 -26.21496 -24.88296 -24.53423 -23.63059 -23.06467 -20.99652 -20.19339 -19.67421 -18.93927 -18.27310 -17.61938 -16.76309 -16.27627 -15.84587 -15.54783 -15.26661 -14.93308 -14.70267 -14.60119 -14.53659 -14.03030 -13.83045 -13.50877 -13.29108 -13.16601 -12.78466 -12.63693 -12.11227 -11.88973 -11.79688 -11.37248 -11.14337 -10.95771 -10.81038 -10.49694 -10.23740 -10.18684 -10.09700 -9.92945 -9.84627 -9.73825 -9.68920 -9.64934 -8.94419 -8.76779 -8.59129 -6.86198 -5.77817 -3.14540 -0.34371 0.16469 1.41198 2.20457 3.08409 3.13148 3.39815 3.45406 3.46241 3.66938 3.73416 3.90306 4.06199 4.24684 4.31798 4.45116 4.54676 4.80485 4.90631 5.16217 5.25027 5.31672 5.32919 5.38930 5.47994 5.50230 5.61341 5.64454 5.80329 5.91799 6.01433 6.10735 6.17124 6.23871 6.44760 6.50088 6.56690 6.66736 6.76230 7.01981 7.18146 7.45315 7.51104 7.59203 7.70183 7.78395 8.23167 8.28402 9.16140 9.76583 10.43489 11.33867 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.002617 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.116406 B =10695.091913 C =11556.846411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.105 3.895 16 N -0.696 5.696 17 C 0.556 3.444 18 O -0.528 6.528 19 C 0.149 3.851 20 C -0.130 4.130 21 C -0.039 4.039 22 C -0.157 4.157 23 C 0.159 3.841 24 N -0.485 5.485 25 C 0.086 3.914 26 C -0.133 4.133 27 C 0.153 3.847 28 N -0.448 5.448 29 H 0.254 0.746 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 -21.500 -6.087 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.020 4.020 16 N -0.346 5.346 17 C 0.339 3.661 18 O -0.403 6.403 19 C -0.007 4.007 20 C -0.151 4.151 21 C -0.067 4.067 22 C -0.161 4.161 23 C -0.014 4.014 24 N -0.193 5.193 25 C -0.057 4.057 26 C -0.154 4.154 27 C 0.025 3.975 28 N -0.160 5.160 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.242 0.758 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.179 0.821 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.385 -21.339 -5.747 24.010 hybrid contribution 0.439 1.246 -0.442 1.393 sum 9.824 -20.093 -6.189 23.206 Atomic orbital electron populations 1.69939 1.05015 1.25318 1.55901 1.24903 0.95689 0.97874 1.01406 0.86139 0.78706 0.83318 0.77726 1.21372 1.21641 1.20574 1.18994 0.90421 0.82166 1.44651 0.90610 1.44497 1.05887 1.00758 1.80116 1.21475 0.84621 0.90321 0.98921 1.23025 0.97443 0.99541 0.98670 1.22647 0.97035 0.97047 0.99847 1.21132 0.94536 0.88098 0.91900 0.94301 1.22402 0.96834 0.82975 0.99743 1.46053 1.52194 1.18894 1.17455 1.17922 0.79647 0.85334 0.83239 1.90814 1.60822 1.44107 1.44593 1.21797 0.94513 0.93703 0.90661 1.21884 0.96592 0.98726 0.97896 1.21458 0.95495 0.91539 0.98165 1.19954 1.01858 0.97784 0.96515 1.23253 0.93603 0.87235 0.97346 1.67497 1.16485 1.33934 1.01370 1.22285 0.93074 0.96010 0.94342 1.21826 1.00935 0.92793 0.99825 1.18902 0.93910 0.91983 0.92754 1.67907 1.17246 1.00403 1.30451 0.93588 0.90757 0.95656 0.92279 0.92299 0.91836 0.92249 0.91538 0.90672 0.75771 0.82549 0.82918 0.81428 0.82130 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.54 55.49 0.58 -25.93 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.38 9.73 -15.06 -0.15 -6.53 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.52 3.13 -162.57 -0.51 -15.02 16 10 C 0.17 4.06 5.42 -2.53 -0.01 4.04 16 11 C -0.15 -2.70 7.10 -24.52 -0.17 -2.87 16 12 C -0.13 -2.13 6.07 -24.83 -0.15 -2.28 16 13 C 0.15 3.00 3.22 -66.95 -0.22 2.78 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 15 C 0.11 2.02 5.09 -4.04 -0.02 2.00 16 16 N -0.70 -11.00 5.39 -61.08 -0.33 -11.32 16 17 C 0.56 8.93 7.82 -12.08 -0.09 8.84 16 18 O -0.53 -10.08 16.28 5.38 0.09 -9.99 16 19 C 0.15 1.94 6.75 -82.89 -0.56 1.38 16 20 C -0.13 -1.35 9.54 -39.42 -0.38 -1.73 16 21 C -0.04 -0.30 9.92 -39.29 -0.39 -0.69 16 22 C -0.16 -1.41 5.75 -106.74 -0.61 -2.03 16 23 C 0.16 1.20 11.05 -16.98 -0.19 1.01 16 24 N -0.49 -4.34 10.30 -13.18 -0.14 -4.48 16 25 C 0.09 0.69 11.05 -17.99 -0.20 0.49 16 26 C -0.13 -1.18 10.08 -39.33 -0.40 -1.58 16 27 C 0.15 1.66 6.63 -84.86 -0.56 1.10 16 28 N -0.45 -5.56 9.50 -7.49 -0.07 -5.63 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.07 1.96 6.86 -51.93 -0.36 1.60 16 31 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.04 7.78 -51.93 -0.40 0.64 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.38 8.03 -51.93 -0.42 0.97 16 37 H 0.07 1.63 7.86 -51.93 -0.41 1.23 16 38 H 0.41 5.65 7.55 -40.82 -0.31 5.34 16 39 H 0.16 1.52 7.60 -52.48 -0.40 1.12 16 40 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -32.87 361.40 -9.79 -42.66 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.64 Total: 3.45 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -4.20 Total: 3.79 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.46 Total: -62.39 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.87 -9.79 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028164792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.080 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds