Wall clock time and date at job start Tue Mar 31 2020 15:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.53006 * 109.47020 * 119.99647 * 2 1 3 5 5 C 1.52998 * 109.47206 * 184.99825 * 4 2 1 6 6 C 1.50701 * 109.47137 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99819 * 269.72996 * 6 5 4 8 8 C 1.38237 * 120.00009 * 179.76493 * 7 6 5 9 9 C 1.38230 * 119.99627 * 0.50812 * 8 7 6 10 10 C 1.38234 * 120.00234 * 359.74517 * 9 8 7 11 11 C 1.38230 * 119.99956 * 90.00303 * 6 5 4 12 12 N 1.46498 * 109.47038 * 239.99712 * 2 1 3 13 13 S 1.65596 * 119.99862 * 95.00650 * 12 2 1 14 14 O 1.42101 * 106.40045 * 311.45357 * 13 12 2 15 15 O 1.42106 * 106.40310 * 178.53630 * 13 12 2 16 16 N 1.65597 * 107.22389 * 64.99463 * 13 12 2 17 17 C 1.46506 * 119.99791 * 89.99756 * 16 13 12 18 18 C 1.46498 * 119.99910 * 270.27980 * 16 13 12 19 19 C 1.50703 * 109.46964 * 264.71709 * 18 16 13 20 20 H 1.08004 * 119.99711 * 0.02562 * 19 18 16 21 21 C 1.37871 * 119.99968 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00248 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47477 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47250 * 120.00270 * 23 21 19 26 26 H 1.48506 * 109.47052 * 239.99610 * 23 21 19 27 27 H 1.09006 * 109.47251 * 60.00128 * 1 2 3 28 28 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47385 * 300.00194 * 1 2 3 30 30 H 1.09001 * 109.47162 * 305.00019 * 4 2 1 31 31 H 1.09004 * 109.46795 * 64.99778 * 4 2 1 32 32 H 1.08996 * 109.47553 * 300.00480 * 5 4 2 33 33 H 1.09005 * 109.46764 * 60.00339 * 5 4 2 34 34 H 1.08010 * 120.00253 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.00117 * 180.22369 * 8 7 6 36 36 H 1.07999 * 120.00353 * 179.72455 * 9 8 7 37 37 H 1.08006 * 120.00451 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.00046 * 0.02562 * 11 6 5 39 39 H 0.97000 * 120.00220 * 274.99792 * 12 2 1 40 40 H 1.08999 * 109.46892 * 90.00624 * 17 16 13 41 41 H 1.09000 * 109.46803 * 209.99797 * 17 16 13 42 42 H 1.09000 * 109.47214 * 330.00591 * 17 16 13 43 43 H 1.08990 * 109.47572 * 24.71903 * 18 16 13 44 44 H 1.09003 * 109.47280 * 144.72260 * 18 16 13 45 45 H 0.97000 * 120.00205 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0671 -1.3242 2.5440 7 6 4.2045 -0.6336 3.7336 8 6 4.6606 -1.2869 4.8633 9 6 4.9894 -2.6280 4.8007 10 6 4.8570 -3.3173 3.6098 11 6 4.3959 -2.6654 2.4814 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1771 -2.5504 14 8 1.3247 1.0592 -2.7922 15 8 2.8777 -0.7636 -3.5084 16 7 3.7097 1.1299 -2.1620 17 6 5.0720 0.6261 -2.3537 18 6 3.4953 2.4743 -1.6209 19 6 3.5556 3.4818 -2.7401 20 1 3.7353 3.1533 -3.7532 21 6 3.3815 4.8226 -2.4708 22 7 3.1632 5.2226 -1.2371 23 14 3.4556 6.0713 -3.8582 24 1 3.7121 5.3703 -5.1419 25 1 2.1630 6.7977 -3.9399 26 1 4.5512 7.0387 -3.5955 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 1.7515 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4370 1.3574 34 1 3.9521 0.4155 3.7813 35 1 4.7645 -0.7482 5.7936 36 1 5.3500 -3.1374 5.6821 37 1 5.1143 -4.3651 3.5607 38 1 4.2932 -3.2037 1.5508 39 1 2.1109 -1.6562 -1.1948 40 1 5.4162 0.8817 -3.3558 41 1 5.7340 1.0790 -1.6156 42 1 5.0792 -0.4571 -2.2323 43 1 2.5174 2.5216 -1.1419 44 1 4.2702 2.6989 -0.8879 45 1 3.0411 6.1661 -1.0476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027935846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:49 Heat of formation + Delta-G solvation = -67.861042 kcal Electronic energy + Delta-G solvation = -26448.349219 eV Core-core repulsion = 22784.901680 eV Total energy + Delta-G solvation = -3663.447539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.43778 -37.22184 -36.46946 -35.47320 -35.11015 -33.25944 -32.43509 -30.98176 -30.16620 -28.42047 -27.78049 -25.07026 -24.16319 -22.66259 -22.30410 -21.28498 -20.79651 -19.05191 -17.33547 -16.86896 -16.57814 -16.28913 -16.07387 -15.36128 -15.24484 -14.93348 -14.34721 -14.08756 -13.72873 -13.54436 -13.38749 -13.27298 -13.09460 -12.83671 -12.74619 -12.36204 -12.12800 -12.11746 -11.64152 -11.56433 -11.50180 -11.33769 -11.18481 -11.15006 -11.11486 -11.06338 -10.73346 -10.68262 -10.66035 -10.37917 -10.01372 -9.73939 -9.32480 -9.02295 -8.72832 -8.44527 -8.06014 -6.07295 -4.10443 1.25603 1.27134 1.29949 3.31014 3.38794 3.44254 3.57030 3.68477 4.17322 4.44977 4.59945 4.75074 4.87030 4.98184 5.01574 5.06532 5.14719 5.18405 5.26570 5.40241 5.43051 5.51984 5.56217 5.66140 5.72295 5.73793 5.83824 5.95946 6.00479 6.02344 6.06728 6.23957 6.29492 6.37083 6.40520 6.43434 6.46651 6.54135 6.61530 6.91941 7.12477 7.26714 7.39925 7.61443 7.90836 8.20181 8.92095 9.54916 11.01263 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.003732 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.774871 B = 7501.819096 C = 8323.518312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.149 3.851 3 H 0.094 0.906 4 C -0.113 4.113 5 C -0.087 4.087 6 C -0.073 4.073 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.131 4.131 10 C -0.121 4.121 11 C -0.119 4.119 12 N -1.130 6.130 13 S 2.780 3.220 14 O -0.963 6.963 15 O -1.001 7.001 16 N -0.998 5.998 17 C 0.110 3.890 18 C 0.257 3.743 19 C -0.527 4.527 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.284 1.284 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.407 0.593 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -15.396 11.685 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.042 3.958 3 H 0.112 0.888 4 C -0.152 4.152 5 C -0.124 4.124 6 C -0.073 4.073 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.149 4.149 10 C -0.139 4.139 11 C -0.137 4.137 12 N -0.888 5.888 13 S 2.788 3.212 14 O -0.946 6.946 15 O -0.985 6.985 16 N -0.841 5.841 17 C -0.037 4.037 18 C 0.135 3.865 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.239 0.761 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.815 -15.050 10.947 18.628 hybrid contribution 0.350 0.380 -0.238 0.569 sum 1.165 -14.669 10.710 18.200 Atomic orbital electron populations 1.22293 0.95245 1.02007 1.03317 1.20809 0.94238 0.96662 0.84080 0.88832 1.21853 0.94701 1.01076 0.97589 1.20694 0.95601 1.01205 0.94902 1.20003 0.97859 0.93988 0.95440 1.21155 0.99708 1.00166 0.92465 1.21152 0.99362 0.94802 0.98412 1.21107 1.01130 0.94806 0.97858 1.21124 0.99900 0.99740 0.93121 1.21081 0.99805 0.94327 0.98532 1.56354 1.82396 1.18955 1.31062 1.02003 0.73763 0.72545 0.72909 1.93624 1.52512 1.65056 1.83397 1.93540 1.82255 1.64102 1.58641 1.57641 1.17970 1.27505 1.80940 1.21185 0.83860 0.96891 1.01745 1.19105 0.97315 0.75698 0.94416 1.21524 1.48999 0.91465 0.94616 0.92162 1.24910 0.94907 0.98391 0.95757 1.69912 1.49141 1.16011 1.18461 0.86477 0.77651 0.81116 0.82420 1.19664 1.20814 1.20996 0.90849 0.92659 0.91745 0.90615 0.91464 0.90596 0.90103 0.85826 0.86258 0.86478 0.86376 0.86178 0.76135 0.93230 0.91511 0.93056 0.94457 0.94760 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.52 37.16 0.35 -1.83 16 2 C 0.15 2.00 2.80 -67.93 -0.19 1.81 16 3 H 0.09 1.46 6.20 -51.93 -0.32 1.14 16 4 C -0.11 -1.20 4.80 -26.73 -0.13 -1.33 16 5 C -0.09 -0.97 5.23 -27.88 -0.15 -1.11 16 6 C -0.07 -0.79 5.13 -104.63 -0.54 -1.33 16 7 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 8 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 9 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 10 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 11 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 12 N -1.13 -15.83 4.98 -4.89 -0.02 -15.85 16 13 S 2.78 53.75 5.96 -107.50 -0.64 53.11 16 14 O -0.96 -22.51 16.37 -57.17 -0.94 -23.45 16 15 O -1.00 -20.75 17.21 -57.17 -0.98 -21.73 16 16 N -1.00 -19.98 3.23 -123.05 -0.40 -20.37 16 17 C 0.11 1.85 10.33 59.85 0.62 2.47 16 18 C 0.26 6.16 4.82 -5.19 -0.03 6.14 16 19 C -0.53 -14.59 9.38 -34.44 -0.32 -14.92 16 20 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 23 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.07 1.13 7.64 -51.93 -0.40 0.74 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 33 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.41 4.58 8.84 -34.47 -0.30 4.27 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.04 7.94 -51.93 -0.41 0.62 16 42 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 43 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 44 H 0.03 0.83 7.96 -51.93 -0.41 0.42 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -33.36 384.35 -11.08 -44.44 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.17 Total: 2.51 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.44 Total: -16.35 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.32 Total: -61.06 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.92 Total: -45.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.64 Total: 53.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.36 -11.08 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027935846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.421 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds