Wall clock time and date at job start Tue Mar 31 2020 14:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.50703 * 109.47038 * 119.99567 * 2 1 3 5 5 C 1.38250 * 119.99810 * 74.06650 * 4 2 1 6 6 C 1.38219 * 120.00003 * 179.97438 * 5 4 2 7 7 C 1.38261 * 119.99939 * 0.02562 * 6 5 4 8 8 C 1.38208 * 119.99610 * 359.97438 * 7 6 5 9 9 S 1.76203 * 119.99843 * 180.02562 * 8 7 6 10 10 N 1.65602 * 107.21866 * 89.99889 * 9 8 7 11 11 O 1.42092 * 106.40602 * 203.53919 * 9 8 7 12 12 O 1.42105 * 106.39997 * 336.46363 * 9 8 7 13 13 C 1.38216 * 120.00004 * 253.79440 * 4 2 1 14 14 N 1.46896 * 109.47135 * 239.99542 * 2 1 3 15 15 C 1.46898 * 111.00028 * 54.29977 * 14 2 1 16 16 C 1.46900 * 110.99823 * 178.24916 * 14 2 1 17 17 C 1.53006 * 109.46931 * 170.00210 * 16 14 2 18 18 C 1.52998 * 109.46775 * 180.02562 * 17 16 14 19 19 C 1.50707 * 109.46730 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00115 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99600 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99643 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46823 * 90.00663 * 23 21 19 25 25 H 1.48499 * 109.47329 * 210.00161 * 23 21 19 26 26 H 1.48499 * 109.47471 * 330.00743 * 23 21 19 27 27 H 1.08998 * 109.47427 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47329 * 300.00332 * 1 2 3 29 29 H 1.08999 * 109.46997 * 60.00407 * 1 2 3 30 30 H 1.08001 * 120.00423 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.00040 * 180.02562 * 6 5 4 32 32 H 1.07990 * 120.00019 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99876 * 0.02562 * 10 9 8 34 34 H 0.96996 * 120.00290 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.00063 * 359.97438 * 13 4 2 36 36 H 1.08998 * 109.47498 * 177.72359 * 15 14 2 37 37 H 1.09004 * 109.47185 * 57.72490 * 15 14 2 38 38 H 1.08996 * 109.47047 * 297.72797 * 15 14 2 39 39 H 1.08998 * 109.47398 * 290.00328 * 16 14 2 40 40 H 1.09003 * 109.47000 * 50.00739 * 16 14 2 41 41 H 1.08998 * 109.46706 * 299.99644 * 17 16 14 42 42 H 1.08992 * 109.47106 * 60.00059 * 17 16 14 43 43 H 1.08998 * 109.47243 * 299.99928 * 18 17 16 44 44 H 1.09003 * 109.47310 * 60.00434 * 18 17 16 45 45 H 0.97004 * 119.99899 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.9528 -2.0880 1.3143 6 6 2.4140 -2.7396 2.4426 7 6 2.9543 -2.0135 3.4878 8 6 3.0337 -0.6363 3.4041 9 16 3.7230 0.2891 4.7358 10 7 5.3485 0.4238 4.4495 11 8 3.1872 1.6011 4.6324 12 8 3.5858 -0.5172 5.8979 13 6 2.5776 0.0151 2.2730 14 7 2.0196 -0.6926 -1.1993 15 6 1.4406 -0.1097 -2.4171 16 6 3.4875 -0.6760 -1.2544 17 6 3.9667 -1.6093 -2.3681 18 6 5.4955 -1.5925 -2.4250 19 6 5.9675 -2.5123 -3.5215 20 1 5.2488 -3.0543 -4.1184 21 6 7.3167 -2.6611 -3.7634 22 7 8.1917 -2.0007 -3.0369 23 14 7.9017 -3.8017 -5.1221 24 1 8.0106 -3.0420 -6.3935 25 1 9.2307 -4.3586 -4.7629 26 1 6.9291 -4.9111 -5.2901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.5311 -2.6553 0.4977 31 1 2.3522 -3.8158 2.5078 32 1 3.3150 -2.5226 4.3693 33 1 5.7360 0.0229 3.6557 34 1 5.9129 0.9043 5.0751 35 1 2.6441 1.0909 2.2056 36 1 1.8506 -0.6143 -3.2919 37 1 1.6837 0.9519 -2.4629 38 1 0.3579 -0.2341 -2.4001 39 1 3.8321 0.3381 -1.4568 40 1 3.8907 -1.0129 -0.2994 41 1 3.6221 -2.6234 -2.1655 42 1 3.5634 -1.2724 -3.3230 43 1 5.8404 -0.5785 -2.6272 44 1 5.8984 -1.9297 -1.4699 45 1 9.1410 -2.1057 -3.2069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077377293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:35 Heat of formation + Delta-G solvation = -57.403772 kcal Electronic energy + Delta-G solvation = -25777.402619 eV Core-core repulsion = 22114.408541 eV Total energy + Delta-G solvation = -3662.994078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98727 -37.65451 -37.27970 -35.97992 -34.16655 -33.34862 -32.59095 -31.42086 -31.11432 -29.28072 -27.06770 -25.65594 -23.72762 -23.09463 -22.27071 -20.62686 -19.94307 -19.44927 -18.09908 -17.53343 -16.79278 -16.46022 -16.23920 -15.77671 -15.58859 -15.18269 -14.81571 -14.48815 -14.38340 -14.11420 -13.78252 -13.23331 -12.94268 -12.57525 -12.40420 -12.35048 -12.28537 -12.24298 -12.23301 -12.08458 -11.89903 -11.64100 -11.41022 -11.25293 -11.01210 -10.85127 -10.78368 -10.66742 -10.56449 -10.50184 -9.66940 -9.48446 -9.38169 -9.10418 -8.98099 -8.37512 -8.19676 -6.02896 -4.04936 0.22502 0.68109 1.11383 2.93563 3.25135 3.29475 3.35961 3.39306 3.58286 3.98455 4.28298 4.44418 4.57789 4.70880 4.87758 5.05284 5.10873 5.15270 5.28979 5.32298 5.33725 5.49252 5.55567 5.60439 5.72129 5.75038 5.77558 5.81442 5.84776 5.91698 6.00243 6.12937 6.17472 6.26512 6.34143 6.63693 6.67498 6.72334 6.82850 7.05769 7.26142 7.29980 7.64578 7.79065 7.97215 8.40540 9.02113 9.59279 11.08519 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.003253 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.374991 B = 8606.161099 C =10052.629306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 H 0.050 0.950 4 C -0.093 4.093 5 C -0.025 4.025 6 C -0.142 4.142 7 C -0.021 4.021 8 C -0.677 4.677 9 S 2.704 3.296 10 N -1.251 6.251 11 O -0.968 6.968 12 O -0.968 6.968 13 C -0.017 4.017 14 N -0.536 5.536 15 C 0.020 3.980 16 C 0.053 3.947 17 C -0.103 4.103 18 C 0.023 3.977 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.420 0.580 34 H 0.419 0.581 35 H 0.138 0.862 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.013 0.987 44 H 0.014 0.986 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.818 4.189 13.013 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.094 4.094 5 C -0.043 4.043 6 C -0.161 4.161 7 C -0.040 4.040 8 C -0.765 4.765 9 S 2.794 3.206 10 N -0.926 5.926 11 O -0.957 6.957 12 O -0.958 6.958 13 C -0.037 4.037 14 N -0.260 5.260 15 C -0.128 4.128 16 C -0.074 4.074 17 C -0.141 4.141 18 C -0.015 4.015 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.249 0.751 35 H 0.156 0.844 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.451 4.072 13.835 19.721 hybrid contribution 1.247 -0.132 -1.593 2.027 sum -12.204 3.940 12.242 17.729 Atomic orbital electron populations 1.21921 0.93423 1.02859 1.01945 1.20568 0.95571 0.94963 0.88158 0.93237 1.19896 0.99774 0.94352 0.95398 1.21465 0.92386 0.94016 0.96456 1.21363 1.00236 1.00615 0.93875 1.20942 0.93240 0.91613 0.98235 1.30341 1.21003 1.07070 1.18123 1.01362 0.72416 0.73672 0.73144 1.53031 1.28714 1.73260 1.37551 1.93594 1.77846 1.37997 1.86274 1.93593 1.85516 1.70294 1.46360 1.20811 0.92149 1.00027 0.90711 1.62153 1.08923 1.53820 1.01123 1.22471 0.99899 0.97214 0.93199 1.22344 0.84877 0.99059 1.01102 1.21648 0.99331 0.97759 0.95384 1.19061 0.88459 0.96953 0.97013 1.21239 0.91640 1.25883 1.16924 0.92715 1.25016 0.96987 0.96012 0.96409 1.69960 1.01530 1.42230 1.39854 0.86611 0.78108 0.81121 0.82262 1.20699 1.21227 1.19859 0.91563 0.92177 0.91809 0.84161 0.84827 0.84227 0.75224 0.75088 0.84382 0.90375 0.95876 0.91522 0.95294 0.91278 0.92710 0.93365 0.96899 0.96739 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.70 37.16 0.32 -1.06 16 2 C 0.12 1.35 2.27 -68.87 -0.16 1.20 16 3 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 4 C -0.09 -1.11 3.48 -104.62 -0.36 -1.47 16 5 C -0.02 -0.29 8.92 -39.58 -0.35 -0.64 16 6 C -0.14 -1.51 10.05 -39.58 -0.40 -1.91 16 7 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 8 C -0.68 -7.42 5.94 -39.59 -0.24 -7.66 16 9 S 2.70 28.14 6.28 -107.50 -0.68 27.46 16 10 N -1.25 -9.35 9.55 60.35 0.58 -8.78 16 11 O -0.97 -12.85 17.29 -57.17 -0.99 -13.84 16 12 O -0.97 -12.58 17.28 -57.17 -0.99 -13.57 16 13 C -0.02 -0.20 9.14 -39.58 -0.36 -0.56 16 14 N -0.54 -7.24 4.12 -236.28 -0.97 -8.21 16 15 C 0.02 0.25 8.82 60.06 0.53 0.78 16 16 C 0.05 0.88 4.76 -3.82 -0.02 0.86 16 17 C -0.10 -2.06 5.09 -26.73 -0.14 -2.19 16 18 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.56 6.38 -51.93 -0.33 0.23 16 30 H 0.14 1.59 7.90 -52.49 -0.41 1.18 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.25 7.62 -52.49 -0.40 0.85 16 33 H 0.42 2.67 8.92 -34.47 -0.31 2.36 16 34 H 0.42 2.38 8.96 -34.47 -0.31 2.07 16 35 H 0.14 1.46 7.56 -52.49 -0.40 1.07 16 36 H 0.08 1.05 6.21 -51.93 -0.32 0.72 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 39 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.07 1.17 6.65 -51.93 -0.35 0.82 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.95 6.43 -51.93 -0.33 0.61 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -34.96 376.84 -10.57 -45.53 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.82 Total: 1.26 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.10 Total: -26.10 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.34 Total: -42.81 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.98 Total: -27.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 28.14 SS G_CDS: -0.68 Total: 27.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.96 -10.57 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077377293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.873 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds