Wall clock time and date at job start Tue Mar 31 2020 15:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47381 * 2 1 4 4 C 1.50700 * 109.46890 * 239.99029 * 2 1 3 5 5 H 1.08001 * 120.00287 * 240.00178 * 4 2 1 6 6 C 1.37878 * 119.99798 * 60.00468 * 4 2 1 7 7 N 1.31511 * 119.99765 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47202 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47108 * 120.00100 * 8 6 4 11 11 H 1.48498 * 109.47558 * 240.00470 * 8 6 4 12 12 N 1.46501 * 109.46540 * 119.99560 * 2 1 3 13 13 C 1.46502 * 120.00485 * 59.99956 * 12 2 1 14 14 C 1.34781 * 119.99649 * 239.99401 * 12 2 1 15 15 O 1.21586 * 120.00335 * 0.02562 * 14 12 2 16 16 N 1.34782 * 119.99568 * 180.02562 * 14 12 2 17 17 C 1.39947 * 119.99494 * 185.28115 * 16 14 12 18 18 C 1.39332 * 120.78740 * 212.51115 * 17 16 14 19 19 N 1.32116 * 119.10768 * 179.97438 * 18 17 16 20 20 C 1.32602 * 120.81367 * 359.97438 * 19 18 17 21 21 C 1.48285 * 119.13151 * 179.97438 * 20 19 18 22 22 C 1.39384 * 120.12756 * 359.72896 * 21 20 19 23 23 C 1.38012 * 119.87512 * 179.67648 * 22 21 20 24 24 C 1.38337 * 120.12129 * 0.61814 * 23 22 21 25 25 C 1.38332 * 120.25075 * 359.67751 * 24 23 22 26 26 C 1.38002 * 120.12777 * 359.97438 * 25 24 23 27 27 N 1.32597 * 121.72998 * 0.02562 * 20 19 18 28 28 C 1.32107 * 120.81735 * 359.97438 * 27 20 19 29 29 H 1.08991 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46762 * 300.00860 * 1 2 3 31 31 H 1.08998 * 109.46484 * 60.00445 * 1 2 3 32 32 H 0.97001 * 119.99410 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46999 * 269.99803 * 13 12 2 34 34 H 1.09007 * 109.46898 * 29.99616 * 13 12 2 35 35 H 1.08998 * 109.47241 * 149.99569 * 13 12 2 36 36 H 0.96993 * 120.00069 * 5.28559 * 16 14 12 37 37 H 1.08001 * 120.44984 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.06770 * 359.97438 * 22 21 20 39 39 H 1.07993 * 119.94089 * 180.31975 * 23 22 21 40 40 H 1.07995 * 119.87386 * 179.69803 * 24 23 22 41 41 H 1.08005 * 119.92982 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.06285 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.44784 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2397 -2.4827 7 7 0.9429 0.8293 -2.6034 8 14 2.3224 -1.1201 -4.0077 9 1 3.1472 -2.2869 -3.6035 10 1 1.1677 -1.5871 -4.8163 11 1 3.1474 -0.1866 -4.8160 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4283 14 6 2.7932 -0.0355 2.0834 15 8 3.0867 1.1287 1.8911 16 7 3.2428 -0.6709 3.1837 17 6 3.9539 0.0372 4.1591 18 6 4.9599 -0.5817 4.8982 19 7 5.6104 0.1183 5.8104 20 6 5.3164 1.3933 6.0255 21 6 6.0699 2.1435 7.0591 22 6 7.0690 1.5088 7.7951 23 6 7.7716 2.2138 8.7511 24 6 7.4771 3.5445 8.9884 25 6 6.4824 4.1778 8.2652 26 6 5.7782 3.4847 7.3018 27 7 4.3656 2.0146 5.3413 28 6 3.6734 1.3781 4.4134 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 0.7083 1.1604 -3.4845 33 1 0.7375 -2.1442 1.9996 34 1 1.5294 -2.5969 0.4711 35 1 2.4627 -2.5817 1.9867 36 1 3.0735 -1.6189 3.2994 37 1 5.2051 -1.6195 4.7271 38 1 7.2963 0.4686 7.6143 39 1 8.5494 1.7245 9.3184 40 1 8.0261 4.0910 9.7409 41 1 6.2571 5.2170 8.4545 42 1 5.0021 3.9803 6.7375 43 1 2.9006 1.8902 3.8594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086163038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:09 Heat of formation + Delta-G solvation = 60.993740 kcal Electronic energy + Delta-G solvation = -26255.855548 eV Core-core repulsion = 22494.844372 eV Total energy + Delta-G solvation = -3761.011176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30134 -39.79397 -38.85474 -35.97315 -34.93949 -33.74743 -33.05069 -32.06421 -31.03638 -29.80370 -28.55650 -26.34692 -25.31160 -24.91180 -24.46608 -22.39876 -22.05071 -21.25504 -19.57463 -18.25493 -17.91890 -17.20354 -16.95922 -16.24248 -16.16995 -15.24891 -15.21701 -14.89721 -14.69878 -14.64734 -14.25191 -13.68374 -13.55472 -13.39035 -13.34216 -12.95649 -12.74563 -12.63839 -11.87638 -11.64737 -11.61525 -11.37312 -11.23440 -11.18981 -11.04334 -10.89000 -10.84615 -10.77314 -10.34401 -10.25141 -9.66623 -9.43884 -9.26154 -9.07591 -9.05457 -8.51527 -8.12416 -7.70573 -6.15406 -4.23729 0.37751 1.09577 1.28493 1.55933 2.85081 3.21032 3.29630 3.31702 3.40213 3.63794 3.76535 4.05249 4.13710 4.22016 4.35513 4.53982 4.80399 4.83646 4.90908 4.97414 5.11929 5.16549 5.35143 5.42685 5.43748 5.69988 5.82127 5.82553 5.93041 6.01675 6.15067 6.33309 6.35176 6.44668 6.53991 6.58677 6.69855 6.78768 6.87294 7.00138 7.02856 7.30991 7.56942 7.66570 7.94853 8.06004 8.10044 8.42535 8.75073 8.96836 9.43077 10.89993 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.002277 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.697892 B =12296.363731 C =12480.823515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.271 3.729 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.598 5.598 13 C 0.082 3.918 14 C 0.695 3.305 15 O -0.577 6.577 16 N -0.683 5.683 17 C 0.084 3.916 18 C 0.114 3.886 19 N -0.491 5.491 20 C 0.316 3.684 21 C -0.034 4.034 22 C -0.077 4.077 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.075 4.075 27 N -0.488 5.488 28 C 0.151 3.849 29 H 0.030 0.970 30 H 0.012 0.988 31 H 0.095 0.905 32 H 0.264 0.736 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.407 0.593 37 H 0.170 0.830 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 -2.284 20.229 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.171 3.829 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.331 5.331 13 C -0.062 4.062 14 C 0.397 3.603 15 O -0.454 6.454 16 N -0.333 5.333 17 C -0.018 4.018 18 C -0.056 4.056 19 N -0.203 5.203 20 C 0.051 3.949 21 C -0.036 4.036 22 C -0.097 4.097 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.095 4.095 27 N -0.201 5.201 28 C -0.019 4.019 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.245 0.755 37 H 0.187 0.813 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.791 -0.871 20.459 21.909 hybrid contribution -0.297 -1.650 -1.678 2.372 sum 7.494 -2.521 18.781 20.377 Atomic orbital electron populations 1.22105 0.97931 0.99505 1.00981 1.18978 0.90829 0.94366 0.78736 0.91590 1.21331 1.32027 1.13164 0.90210 0.92168 1.24889 0.94886 0.94974 0.99011 1.69881 1.36148 1.22498 1.23816 0.86419 0.78603 0.79553 0.82678 1.19851 1.20887 1.20857 1.47670 1.49977 1.11707 1.23771 1.21601 0.98443 0.83248 1.02936 1.16018 0.79758 0.85171 0.79397 1.90904 1.62294 1.15451 1.76728 1.42874 1.57716 1.12927 1.19779 1.19440 0.94632 0.95275 0.92498 1.22948 0.89478 1.00830 0.92376 1.68183 1.26950 1.07780 1.17423 1.21127 0.92224 0.87161 0.94344 1.18050 0.96906 0.93236 0.95438 1.21301 0.93762 1.00550 0.94061 1.21095 1.00414 0.94681 0.98810 1.21295 0.97287 0.94972 0.99093 1.21118 0.96808 1.00170 0.96752 1.21359 0.98705 0.93000 0.96426 1.68342 1.06767 1.38495 1.06522 1.23512 0.96604 0.90707 0.91104 0.95094 0.96894 0.88623 0.92612 0.93479 0.89365 0.93486 0.75459 0.81265 0.84693 0.85730 0.86013 0.85639 0.84498 0.79900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.58 2.64 -69.08 -0.18 6.40 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -13.68 7.99 -34.44 -0.28 -13.96 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.60 -11.81 2.75 -181.00 -0.50 -12.31 16 13 C 0.08 1.21 9.24 59.85 0.55 1.76 16 14 C 0.69 13.52 8.05 -86.91 -0.70 12.82 16 15 O -0.58 -13.48 13.36 5.29 0.07 -13.41 16 16 N -0.68 -9.83 5.24 -13.99 -0.07 -9.90 16 17 C 0.08 1.22 6.34 -83.34 -0.53 0.69 16 18 C 0.11 1.43 11.25 -17.02 -0.19 1.24 16 19 N -0.49 -6.82 9.44 -11.00 -0.10 -6.92 16 20 C 0.32 4.71 7.55 -156.95 -1.19 3.52 16 21 C -0.03 -0.45 5.88 -104.91 -0.62 -1.06 16 22 C -0.08 -0.85 9.56 -39.24 -0.38 -1.23 16 23 C -0.13 -1.18 10.03 -39.63 -0.40 -1.58 16 24 C -0.11 -0.91 10.04 -39.51 -0.40 -1.31 16 25 C -0.13 -1.22 10.03 -39.63 -0.40 -1.62 16 26 C -0.08 -0.88 9.56 -39.24 -0.38 -1.26 16 27 N -0.49 -7.79 9.44 -11.00 -0.10 -7.89 16 28 C 0.15 2.46 9.93 -17.02 -0.17 2.29 16 29 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.42 7.02 -51.93 -0.36 1.05 16 35 H 0.05 0.52 6.29 -51.93 -0.33 0.20 16 36 H 0.41 4.40 6.52 -40.82 -0.27 4.14 16 37 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.14 1.42 7.51 -52.49 -0.39 1.02 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.14 1.63 7.51 -52.49 -0.39 1.23 16 43 H 0.18 3.21 6.46 -52.49 -0.34 2.87 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -31.52 360.87 -9.87 -41.40 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.21 Total: 6.51 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -5.00 Total: 5.33 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.15 Total: -60.75 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.52 -9.87 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086163038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.390 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds