Wall clock time and date at job start Tue Mar 31 2020 15:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.38267 * 119.99478 * 269.72674 * 15 14 12 17 17 C 1.38214 * 119.99329 * 179.79160 * 16 15 14 18 18 C 1.38252 * 120.00531 * 0.43456 * 17 16 15 19 19 C 1.38220 * 119.99705 * 359.82132 * 18 17 16 20 20 S 1.76198 * 119.99759 * 179.97438 * 19 18 17 21 21 O 1.42089 * 106.40685 * 23.51405 * 20 19 18 22 22 O 1.42105 * 106.40307 * 156.43571 * 20 19 18 23 23 N 1.65597 * 107.21796 * 269.97093 * 20 19 18 24 24 C 1.46506 * 119.99739 * 90.00216 * 23 20 19 25 25 C 1.46494 * 120.00439 * 270.00534 * 23 20 19 26 26 C 1.38206 * 120.00331 * 89.99940 * 15 14 12 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 32 32 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 33 33 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 34 34 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 35 35 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 36 36 H 1.07990 * 120.00218 * 359.97438 * 16 15 14 37 37 H 1.07997 * 119.99500 * 180.27270 * 17 16 15 38 38 H 1.07997 * 120.00392 * 179.83637 * 18 17 16 39 39 H 1.08995 * 109.47186 * 89.99880 * 24 23 20 40 40 H 1.09002 * 109.47016 * 210.00432 * 24 23 20 41 41 H 1.09001 * 109.46781 * 329.99986 * 24 23 20 42 42 H 1.08994 * 109.47500 * 59.99890 * 25 23 20 43 43 H 1.09003 * 109.47655 * 179.97438 * 25 23 20 44 44 H 1.09006 * 109.46842 * 299.99387 * 25 23 20 45 45 H 1.08000 * 119.99970 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.7821 -1.5811 4.3214 17 6 2.4437 -2.1308 5.4033 18 6 3.6871 -1.6505 5.7702 19 6 4.2703 -0.6231 5.0528 20 16 5.8547 -0.0106 5.5208 21 8 6.4928 -1.0565 6.2405 22 8 6.4135 0.5864 4.3586 23 7 5.6053 1.2175 6.6033 24 6 5.5353 0.9268 8.0375 25 6 5.4547 2.5946 6.1269 26 6 3.6105 -0.0762 3.9679 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1611 -3.4845 31 1 1.8764 -2.6150 0.3648 32 1 1.9053 -2.5654 2.1441 33 1 0.4385 -2.0742 1.2640 34 1 1.9297 1.0872 2.3124 35 1 0.5722 -0.0344 2.5726 36 1 0.8091 -1.9535 4.0374 37 1 1.9880 -2.9337 5.9637 38 1 4.2028 -2.0783 6.6172 39 1 6.5332 0.9925 8.4707 40 1 4.8799 1.6498 8.5232 41 1 5.1404 -0.0783 8.1855 42 1 4.5969 2.6557 5.4573 43 1 5.2992 3.2584 6.9774 44 1 6.3557 2.8945 5.5916 45 1 4.0663 0.7265 3.4073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161958715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:22 Heat of formation + Delta-G solvation = -29.502219 kcal Electronic energy + Delta-G solvation = -26162.007849 eV Core-core repulsion = 22500.223673 eV Total energy + Delta-G solvation = -3661.784175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50735 -37.35179 -37.02457 -36.39162 -35.88866 -33.13504 -31.46932 -31.25760 -28.50542 -28.37388 -26.79402 -25.20734 -24.95000 -23.84269 -23.15420 -21.48400 -19.41497 -18.94172 -17.74104 -17.42785 -16.35989 -16.21794 -16.06373 -15.39723 -15.30112 -14.81023 -14.48661 -14.32313 -14.20108 -13.64982 -13.49070 -13.38965 -12.92583 -12.87956 -12.62680 -12.52939 -12.43609 -12.29519 -12.07916 -11.90539 -11.72297 -11.66144 -11.19815 -11.13875 -11.05703 -10.87239 -10.75880 -10.60959 -10.47424 -10.05033 -9.86352 -9.41660 -9.26272 -8.97599 -8.75105 -8.39878 -7.21226 -6.02445 -4.06132 0.24929 0.84424 1.32917 2.78633 3.33139 3.37072 3.40728 3.49374 3.70087 4.17119 4.41757 4.47536 4.75039 4.83011 4.96359 5.03867 5.10500 5.15606 5.28812 5.30086 5.31497 5.40504 5.42924 5.52824 5.53836 5.64020 5.85645 5.91314 6.06263 6.08086 6.17270 6.24133 6.25975 6.33139 6.57822 6.62199 6.77201 6.84744 6.87187 7.06358 7.42507 7.67383 7.80465 8.06961 8.33378 8.54890 8.99218 9.58975 11.04699 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.003092 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.990274 B = 9052.239264 C = 9521.357565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.086 3.914 15 C -0.078 4.078 16 C -0.058 4.058 17 C -0.142 4.142 18 C -0.032 4.032 19 C -0.678 4.678 20 S 2.694 3.306 21 O -0.959 6.959 22 O -0.949 6.949 23 N -1.008 6.008 24 C 0.094 3.906 25 C 0.089 3.911 26 C -0.001 4.001 27 H 0.007 0.993 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 0.816 22.423 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.201 1.201 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.118 4.118 14 C -0.042 4.042 15 C -0.080 4.080 16 C -0.077 4.077 17 C -0.161 4.161 18 C -0.052 4.052 19 C -0.765 4.765 20 S 2.785 3.215 21 O -0.949 6.949 22 O -0.939 6.939 23 N -0.848 5.848 24 C -0.052 4.052 25 C -0.057 4.057 26 C -0.021 4.021 27 H 0.026 0.974 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.681 0.669 21.958 22.462 hybrid contribution -1.566 -0.517 -0.859 1.860 sum 3.115 0.152 21.099 21.328 Atomic orbital electron populations 1.22416 1.00841 0.99378 1.00571 1.19344 0.89749 0.94639 0.85753 0.94122 1.21074 1.30682 1.12584 0.89610 0.91940 1.24919 0.95176 0.95120 0.99003 1.69870 1.36989 1.23039 1.23552 0.86568 0.79346 0.79537 0.82006 1.21392 1.20132 1.20403 1.62409 1.59496 1.01984 1.01355 1.22310 0.97014 0.91251 1.01210 1.21074 0.96196 0.98237 0.88720 1.20181 0.95006 0.96332 0.96456 1.21446 0.99421 0.93653 0.93190 1.21193 0.95602 1.01029 0.98304 1.20775 0.94447 0.92783 0.97206 1.30826 1.25572 1.11541 1.08611 1.01978 0.74134 0.72600 0.72775 1.93560 1.72858 1.55372 1.73112 1.93607 1.75657 1.76861 1.47756 1.57410 1.89446 1.20226 1.17686 1.21527 1.02273 1.01894 0.79486 1.21587 1.02344 0.81180 1.00547 1.20819 0.92739 0.96882 0.91688 0.97430 0.89224 0.95053 0.92930 0.90704 0.93873 0.96307 0.90301 0.94307 0.85524 0.85377 0.84859 0.92234 0.90866 0.91042 0.91893 0.90126 0.91195 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.28 37.16 0.31 -3.75 16 2 C 0.21 5.21 2.34 -68.87 -0.16 5.05 16 3 H 0.04 1.10 8.03 -51.92 -0.42 0.68 16 4 C -0.50 -13.65 7.94 -34.44 -0.27 -13.92 16 5 H 0.06 1.72 6.75 -52.49 -0.35 1.36 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.20 4.73 -237.73 -1.13 -12.33 16 13 C 0.03 0.60 8.56 60.06 0.51 1.11 16 14 C 0.09 1.50 4.56 -4.98 -0.02 1.47 16 15 C -0.08 -1.19 4.88 -104.62 -0.51 -1.70 16 16 C -0.06 -0.76 7.92 -39.58 -0.31 -1.08 16 17 C -0.14 -1.63 10.05 -39.59 -0.40 -2.02 16 18 C -0.03 -0.38 9.52 -39.58 -0.38 -0.76 16 19 C -0.68 -8.98 5.97 -39.58 -0.24 -9.21 16 20 S 2.69 34.49 5.65 -107.50 -0.61 33.89 16 21 O -0.96 -13.84 16.35 -57.17 -0.94 -14.77 16 22 O -0.95 -15.18 16.44 -57.17 -0.94 -16.12 16 23 N -1.01 -9.33 3.58 -129.20 -0.46 -9.79 16 24 C 0.09 0.62 10.26 59.85 0.61 1.24 16 25 C 0.09 0.68 10.30 59.84 0.62 1.30 16 26 C 0.00 -0.02 9.18 -39.59 -0.36 -0.38 16 27 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 29 H 0.03 0.71 6.38 -51.93 -0.33 0.38 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.07 1.58 6.53 -51.93 -0.34 1.24 16 32 H 0.04 0.74 5.91 -51.93 -0.31 0.43 16 33 H 0.02 0.35 6.28 -51.93 -0.33 0.03 16 34 H 0.08 1.36 7.94 -51.93 -0.41 0.94 16 35 H 0.04 0.65 6.88 -51.93 -0.36 0.30 16 36 H 0.13 1.49 8.00 -52.49 -0.42 1.07 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.13 1.29 7.62 -52.49 -0.40 0.89 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 41 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.40 7.79 -51.93 -0.40 0.00 16 44 H 0.07 0.56 8.01 -51.93 -0.42 0.14 16 45 H 0.14 2.08 7.62 -52.49 -0.40 1.68 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -33.05 368.92 -10.37 -43.42 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.77 Total: -0.47 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.70 Total: -21.15 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.96 Total: -46.77 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -1.88 Total: -30.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 34.49 SS G_CDS: -0.61 Total: 33.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.05 -10.37 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161958715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.919 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds