Wall clock time and date at job start Tue Mar 31 2020 15:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.38267 * 119.99478 * 269.72674 * 15 14 12 17 17 C 1.38214 * 119.99329 * 179.79160 * 16 15 14 18 18 C 1.38252 * 120.00531 * 0.43456 * 17 16 15 19 19 C 1.38220 * 119.99705 * 359.82132 * 18 17 16 20 20 S 1.76198 * 119.99759 * 179.97438 * 19 18 17 21 21 O 1.42089 * 106.40685 * 23.51405 * 20 19 18 22 22 O 1.42105 * 106.40307 * 156.43571 * 20 19 18 23 23 N 1.65597 * 107.21796 * 269.97093 * 20 19 18 24 24 C 1.46506 * 119.99739 * 90.00216 * 23 20 19 25 25 C 1.46494 * 120.00439 * 270.00534 * 23 20 19 26 26 C 1.38206 * 120.00331 * 89.99940 * 15 14 12 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 32 32 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 33 33 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 34 34 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 35 35 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 36 36 H 1.07990 * 120.00218 * 359.97438 * 16 15 14 37 37 H 1.07997 * 119.99500 * 180.27270 * 17 16 15 38 38 H 1.07997 * 120.00392 * 179.83637 * 18 17 16 39 39 H 1.08995 * 109.47186 * 89.99880 * 24 23 20 40 40 H 1.09002 * 109.47016 * 210.00432 * 24 23 20 41 41 H 1.09001 * 109.46781 * 329.99986 * 24 23 20 42 42 H 1.08994 * 109.47500 * 59.99890 * 25 23 20 43 43 H 1.09003 * 109.47655 * 179.97438 * 25 23 20 44 44 H 1.09006 * 109.46842 * 299.99387 * 25 23 20 45 45 H 1.08000 * 119.99970 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.7821 -1.5811 4.3214 17 6 2.4437 -2.1308 5.4033 18 6 3.6871 -1.6505 5.7702 19 6 4.2703 -0.6231 5.0528 20 16 5.8547 -0.0106 5.5208 21 8 6.4928 -1.0565 6.2405 22 8 6.4135 0.5864 4.3586 23 7 5.6053 1.2175 6.6033 24 6 5.5353 0.9268 8.0375 25 6 5.4547 2.5946 6.1269 26 6 3.6105 -0.0762 3.9679 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1611 -3.4845 31 1 1.8764 -2.6150 0.3648 32 1 1.9053 -2.5654 2.1441 33 1 0.4385 -2.0742 1.2640 34 1 1.9297 1.0872 2.3124 35 1 0.5722 -0.0344 2.5726 36 1 0.8091 -1.9535 4.0374 37 1 1.9880 -2.9337 5.9637 38 1 4.2028 -2.0783 6.6172 39 1 6.5332 0.9925 8.4707 40 1 4.8799 1.6498 8.5232 41 1 5.1404 -0.0783 8.1855 42 1 4.5969 2.6557 5.4573 43 1 5.2992 3.2584 6.9774 44 1 6.3557 2.8945 5.5916 45 1 4.0663 0.7265 3.4073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161958715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:21 Heat of formation + Delta-G solvation = -52.674868 kcal Electronic energy + Delta-G solvation = -26163.012690 eV Core-core repulsion = 22500.223673 eV Total energy + Delta-G solvation = -3662.789017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63168 -38.63791 -38.42846 -37.11728 -36.94831 -34.97145 -32.91180 -32.25796 -30.27467 -28.95560 -28.23967 -27.20449 -25.62779 -25.38348 -24.17340 -22.71990 -21.11350 -19.94200 -18.73902 -18.42080 -18.16163 -17.29952 -17.09667 -17.06181 -16.42927 -16.12498 -15.72482 -15.37267 -15.32111 -14.98804 -14.87887 -14.39698 -14.22728 -14.08871 -13.79974 -13.49587 -13.45125 -13.33611 -13.32575 -13.19714 -12.93711 -12.84907 -12.63898 -12.63608 -12.55484 -12.49657 -12.36406 -12.22401 -12.04307 -11.74615 -11.59278 -10.94409 -10.50241 -10.35151 -10.03431 -9.88109 -8.86814 -8.12052 -6.22598 -0.71295 -0.17834 0.29733 1.41533 1.43397 1.50710 1.91872 2.40615 2.48635 2.71545 3.17265 3.19107 3.52038 3.74996 3.85733 3.88753 4.03982 4.21187 4.27922 4.40535 4.51006 4.54027 4.59221 4.63452 4.73069 4.76027 4.78515 4.85528 4.89243 4.95433 4.96867 4.99243 5.04051 5.05265 5.12858 5.16565 5.27644 5.47842 5.54029 5.57041 5.69991 5.78041 5.86632 6.17758 6.45629 6.70573 6.90182 7.46470 8.93778 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.003092 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.990274 B = 9052.239264 C = 9521.357565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.271 1.271 12 N -0.545 5.545 13 C 0.038 3.962 14 C 0.090 3.910 15 C -0.096 4.096 16 C -0.060 4.060 17 C -0.133 4.133 18 C -0.031 4.031 19 C -0.681 4.681 20 S 2.706 3.294 21 O -0.977 6.977 22 O -0.990 6.990 23 N -1.002 6.002 24 C 0.081 3.919 25 C 0.079 3.921 26 C -0.020 4.020 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -0.437 24.798 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.025 0.975 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.208 1.208 10 H -0.202 1.202 11 H -0.196 1.196 12 N -0.268 5.268 13 C -0.110 4.110 14 C -0.037 4.037 15 C -0.098 4.098 16 C -0.079 4.079 17 C -0.151 4.151 18 C -0.050 4.050 19 C -0.768 4.768 20 S 2.798 3.202 21 O -0.967 6.967 22 O -0.980 6.980 23 N -0.843 5.843 24 C -0.063 4.063 25 C -0.066 4.066 26 C -0.040 4.040 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.080 0.920 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.185 -0.593 24.353 24.717 hybrid contribution -1.387 -0.095 -1.446 2.006 sum 2.797 -0.688 22.907 23.087 Atomic orbital electron populations 1.22189 0.99912 0.99346 1.00231 1.19078 0.90309 0.92909 0.86861 0.97523 1.21358 1.30697 1.12531 0.91045 0.92778 1.25649 0.95379 0.95804 1.01693 1.69994 1.37767 1.24065 1.24085 0.85636 0.78599 0.78778 0.78754 1.20834 1.20168 1.19586 1.62247 1.60121 1.02870 1.01605 1.22244 0.97302 0.90122 1.01365 1.21025 0.97003 0.97630 0.88087 1.19995 0.95376 0.97951 0.96455 1.21658 1.00091 0.92796 0.93359 1.21604 0.95009 1.01071 0.97433 1.21203 0.94725 0.91736 0.97376 1.30844 1.25462 1.12147 1.08380 1.01377 0.73893 0.72625 0.72312 1.93525 1.73458 1.56494 1.73225 1.93552 1.76800 1.77603 1.50044 1.57173 1.89169 1.19730 1.18262 1.21857 1.03549 1.03228 0.77712 1.21801 1.01972 0.80804 1.01985 1.20764 0.93173 0.97387 0.92690 0.95220 0.91992 0.94741 0.92925 0.92933 0.91312 0.95704 0.91240 0.93421 0.83950 0.81599 0.82330 0.91583 0.88084 0.90437 0.92063 0.86803 0.92046 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 8.28 71.98 0.60 -6.87 16 2 C 0.22 10.93 2.34 44.17 0.10 11.04 16 3 H 0.01 0.39 8.03 -2.38 -0.02 0.37 16 4 C -0.52 -28.86 7.94 25.60 0.20 -28.65 16 5 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 6 C 0.01 0.75 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.54 -23.34 4.73 -906.03 -4.29 -27.63 16 13 C 0.04 1.44 8.56 127.69 1.09 2.54 16 14 C 0.09 3.15 4.56 85.56 0.39 3.54 16 15 C -0.10 -2.86 4.88 -19.87 -0.10 -2.95 16 16 C -0.06 -1.41 7.92 22.27 0.18 -1.24 16 17 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 18 C -0.03 -0.64 9.52 22.27 0.21 -0.43 16 19 C -0.68 -17.30 5.97 22.27 0.13 -17.16 16 20 S 2.71 68.24 5.65 -56.49 -0.32 67.92 16 21 O -0.98 -27.19 16.35 -128.00 -2.09 -29.28 16 22 O -0.99 -32.76 16.44 -128.00 -2.10 -34.87 16 23 N -1.00 -17.16 3.58 -562.68 -2.02 -19.17 16 24 C 0.08 0.87 10.26 127.77 1.31 2.18 16 25 C 0.08 1.13 10.30 127.77 1.32 2.45 16 26 C -0.02 -0.60 9.18 22.27 0.20 -0.40 16 27 H 0.03 1.22 6.75 -2.39 -0.02 1.21 16 28 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 29 H 0.03 1.56 6.38 -2.39 -0.02 1.55 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.05 2.22 6.53 -2.39 -0.02 2.20 16 32 H 0.07 2.24 5.91 -2.39 -0.01 2.23 16 33 H 0.02 0.90 6.28 -2.39 -0.01 0.89 16 34 H 0.07 2.49 7.94 -2.38 -0.02 2.47 16 35 H 0.05 1.56 6.88 -2.39 -0.02 1.54 16 36 H 0.14 2.86 8.00 -2.92 -0.02 2.83 16 37 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.16 2.46 7.62 -2.91 -0.02 2.44 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.54 7.92 -2.39 -0.02 0.52 16 41 H 0.08 0.75 7.79 -2.39 -0.02 0.73 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 0.86 7.79 -2.39 -0.02 0.84 16 44 H 0.06 0.98 8.01 -2.38 -0.02 0.96 16 45 H 0.13 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -72.69 368.92 -1.26 -73.95 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.98 Total: 12.48 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 6.31 Total: -37.07 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -6.06 Total: -99.53 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -4.20 Total: -64.15 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 68.24 SS G_CDS: -0.32 Total: 67.92 kcal Total: -72.69 -1.26 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161958715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.275 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds