Wall clock time and date at job start Tue Mar 31 2020 15:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46614 * 2 1 4 4 C 1.50697 * 109.46919 * 119.99612 * 2 1 3 5 5 H 1.07997 * 120.00345 * 120.00606 * 4 2 1 6 6 C 1.37881 * 120.00273 * 300.00522 * 4 2 1 7 7 N 1.31519 * 119.99724 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00277 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47067 * 59.99357 * 8 6 4 10 10 H 1.48492 * 109.47066 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46894 * 299.99538 * 8 6 4 12 12 N 1.46499 * 109.47575 * 239.99930 * 2 1 3 13 13 C 1.34774 * 120.00198 * 84.99530 * 12 2 1 14 14 O 1.21280 * 119.99643 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00079 * 179.97438 * 13 12 2 16 16 H 1.09004 * 108.56768 * 56.72863 * 15 13 12 17 17 C 1.54565 * 108.75797 * 298.54995 * 15 13 12 18 18 S 1.84211 * 101.32650 * 215.93422 * 17 15 13 19 19 C 1.84071 * 93.91190 * 32.25799 * 18 17 15 20 20 N 1.45956 * 108.72416 * 174.82832 * 15 13 12 21 21 C 1.34775 * 122.70488 * 299.85327 * 20 15 13 22 22 O 1.21286 * 119.99985 * 0.07139 * 21 20 15 23 23 C 1.50695 * 120.00327 * 180.02562 * 21 20 15 24 24 C 1.54265 * 110.03368 * 297.16870 * 23 21 20 25 25 C 1.54888 * 104.19451 * 217.10067 * 24 23 21 26 26 C 1.54889 * 102.74830 * 37.94582 * 25 24 23 27 27 C 1.53876 * 110.03574 * 179.97438 * 23 21 20 28 28 H 1.09004 * 109.46984 * 60.00512 * 1 2 3 29 29 H 1.09004 * 109.46614 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47662 * 300.00146 * 1 2 3 31 31 H 0.96998 * 119.99875 * 180.02562 * 7 6 4 32 32 H 0.96998 * 119.99935 * 265.00048 * 12 2 1 33 33 H 1.08997 * 111.05015 * 97.91581 * 17 15 13 34 34 H 1.09005 * 111.08098 * 333.96315 * 17 15 13 35 35 H 1.09002 * 110.77876 * 84.85078 * 19 18 17 36 36 H 1.08998 * 110.77542 * 208.09185 * 19 18 17 37 37 H 1.09004 * 110.01638 * 58.61155 * 23 21 20 38 38 H 1.08994 * 110.48303 * 335.78185 * 24 23 21 39 39 H 1.09005 * 110.48619 * 98.42390 * 24 23 21 40 40 H 1.08995 * 110.75623 * 279.62516 * 25 24 23 41 41 H 1.09007 * 110.90911 * 156.32969 * 25 24 23 42 42 H 1.09007 * 110.48333 * 203.37871 * 26 25 24 43 43 H 1.08995 * 110.60077 * 80.78975 * 26 25 24 44 44 H 1.09003 * 110.03024 * 238.56996 * 27 23 21 45 45 H 1.08998 * 110.02883 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8276 -0.4190 5.2204 11 1 1.8278 -2.5196 4.0083 12 7 2.0185 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6501 -0.7286 -3.5873 16 1 2.0015 -1.5820 -3.7850 17 6 4.0809 -1.2450 -3.3130 18 16 4.8705 -1.0156 -4.9615 19 6 3.8683 0.4720 -5.3749 20 7 2.5760 0.1880 -4.7207 21 6 1.4178 0.7342 -5.1411 22 8 0.3806 0.4704 -4.5703 23 6 1.4115 1.6735 -6.3194 24 6 2.2468 2.9300 -5.9982 25 6 1.4714 4.0856 -6.6782 26 6 -0.0075 3.6924 -6.4386 27 6 -0.0219 2.1578 -6.5999 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7092 1.1619 3.4843 32 1 2.2492 -1.6317 -1.1525 33 1 4.0695 -2.2967 -3.0272 34 1 4.5770 -0.6405 -2.5536 35 1 4.3224 1.3717 -4.9597 36 1 3.7432 0.5663 -6.4535 37 1 1.8143 1.1713 -7.1990 38 1 2.2995 3.0878 -4.9210 39 1 3.2475 2.8412 -6.4211 40 1 1.6930 4.1244 -7.7447 41 1 1.6993 5.0397 -6.2028 42 1 -0.6519 4.1601 -7.1831 43 1 -0.3210 3.9735 -5.4333 44 1 -0.3139 1.8915 -7.6158 45 1 -0.7129 1.7137 -5.8834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171631459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:23 Heat of formation + Delta-G solvation = -71.461556 kcal Electronic energy + Delta-G solvation = -26867.975322 eV Core-core repulsion = 23204.371653 eV Total energy + Delta-G solvation = -3663.603669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63310 -38.87302 -37.06792 -36.01408 -34.71137 -32.65836 -31.62192 -29.22992 -28.76909 -28.48508 -27.42359 -25.25447 -24.30384 -22.18728 -20.94845 -20.53139 -19.52804 -18.96405 -17.79208 -17.51207 -16.99501 -16.17190 -15.64661 -15.33571 -15.23267 -14.81842 -14.64626 -14.60435 -13.90579 -13.65134 -13.47694 -13.43205 -13.26093 -12.79110 -12.38757 -12.35913 -12.04983 -11.79703 -11.60867 -11.46373 -11.20199 -11.17742 -11.09873 -10.96581 -10.92761 -10.85731 -10.67672 -10.57592 -10.32586 -10.22450 -9.68715 -9.30690 -9.05550 -8.64387 -8.53289 -8.10693 -7.92985 -6.12614 -4.22603 1.39395 1.74400 2.52596 2.80248 3.23437 3.24972 3.30112 3.30959 3.97699 4.17760 4.34449 4.36639 4.45045 4.55835 4.72614 4.78472 4.97186 5.02925 5.18315 5.19274 5.24804 5.33002 5.36756 5.42287 5.48115 5.55247 5.56607 5.69659 5.82617 5.95633 6.07096 6.08526 6.25110 6.34530 6.85791 7.02983 7.17885 7.18616 7.44818 7.54923 7.67909 7.91209 8.15204 8.20931 8.61914 8.76036 9.07397 9.44763 10.93154 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003751 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.922073 B = 7463.378032 C = 8788.187713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.499 3.501 14 O -0.531 6.531 15 C 0.112 3.888 16 H 0.106 0.894 17 C -0.060 4.060 18 S -0.271 6.271 19 C 0.158 3.842 20 N -0.599 5.599 21 C 0.540 3.460 22 O -0.508 6.508 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.118 4.118 28 H 0.016 0.984 29 H 0.025 0.975 30 H 0.089 0.911 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 0.070 -19.775 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.167 3.833 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.354 5.354 13 C 0.280 3.720 14 O -0.408 6.408 15 C 0.002 3.998 16 H 0.124 0.876 17 C -0.209 4.209 18 S -0.045 6.045 19 C -0.076 4.076 20 N -0.336 5.336 21 C 0.328 3.672 22 O -0.381 6.381 23 C -0.128 4.128 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.162 4.162 27 C -0.156 4.156 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.408 0.305 -19.950 20.672 hybrid contribution -0.273 -0.424 1.528 1.609 sum 5.134 -0.119 -18.422 19.124 Atomic orbital electron populations 1.22057 0.98366 0.99119 1.00933 1.18722 0.91107 0.93767 0.79678 0.93537 1.21168 1.32627 1.13266 0.90317 0.92126 1.24888 0.94778 0.94938 0.99036 1.69903 1.35700 1.22372 1.23992 0.86510 0.79122 0.79618 0.81848 1.20181 1.21126 1.20140 1.46468 1.65225 1.13384 1.10319 1.20307 0.79378 0.87918 0.84379 1.90657 1.50049 1.15813 1.84252 1.21334 0.97174 0.93895 0.87361 0.87609 1.24526 0.93435 1.06720 0.96171 1.88238 1.55121 1.38469 1.22636 1.24277 0.84569 0.97245 1.01530 1.48166 1.06947 1.47767 1.30692 1.20324 0.81920 0.80015 0.84976 1.90723 1.31096 1.59678 1.56572 1.21912 0.99178 0.95793 0.95883 1.22447 0.97869 0.92951 1.02354 1.22472 0.95239 0.98000 1.00201 1.22367 0.96424 0.95292 1.02088 1.22171 0.95066 0.96006 1.02332 0.96458 0.95555 0.89275 0.92509 0.78085 0.85238 0.87138 0.88465 0.86742 0.88722 0.90155 0.91124 0.91461 0.91272 0.91644 0.91205 0.91542 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.45 16 2 C 0.27 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 N -0.71 -14.56 4.98 -54.93 -0.27 -14.83 16 13 C 0.50 9.96 6.27 -10.99 -0.07 9.90 16 14 O -0.53 -12.80 14.57 -11.26 -0.16 -12.96 16 15 C 0.11 1.65 2.87 -68.56 -0.20 1.45 16 16 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 17 C -0.06 -0.69 6.89 37.98 0.26 -0.43 16 18 S -0.27 -2.95 23.43 -107.50 -2.52 -5.47 16 19 C 0.16 1.64 5.87 60.45 0.35 1.99 16 20 N -0.60 -8.36 2.74 -168.82 -0.46 -8.82 16 21 C 0.54 8.39 6.02 -10.99 -0.07 8.33 16 22 O -0.51 -10.19 14.08 -11.27 -0.16 -10.35 16 23 C -0.11 -1.20 2.50 -90.66 -0.23 -1.42 16 24 C -0.12 -1.22 5.16 -25.07 -0.13 -1.35 16 25 C -0.12 -1.10 6.91 -24.74 -0.17 -1.27 16 26 C -0.12 -1.30 6.83 -25.05 -0.17 -1.47 16 27 C -0.12 -1.36 6.40 -25.59 -0.16 -1.52 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.39 6.76 8.47 -40.82 -0.35 6.42 16 33 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 1.38 7.85 -51.93 -0.41 0.97 16 35 H 0.10 0.98 7.90 -51.93 -0.41 0.57 16 36 H 0.11 0.88 6.95 -51.93 -0.36 0.52 16 37 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 38 H 0.08 1.08 7.85 -51.93 -0.41 0.68 16 39 H 0.07 0.55 7.40 -51.93 -0.38 0.16 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -33.42 366.90 -10.34 -43.77 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.10 Total: 7.20 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.80 Total: 4.79 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.11 Total: -48.03 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.32 Total: -23.31 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.52 Total: -5.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.42 -10.34 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171631459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.695 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds