Wall clock time and date at job start Tue Mar 31 2020 15:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46614 * 2 1 4 4 C 1.50697 * 109.46919 * 119.99612 * 2 1 3 5 5 H 1.07997 * 120.00345 * 120.00606 * 4 2 1 6 6 C 1.37881 * 120.00273 * 300.00522 * 4 2 1 7 7 N 1.31519 * 119.99724 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00277 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47067 * 59.99357 * 8 6 4 10 10 H 1.48492 * 109.47066 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46894 * 299.99538 * 8 6 4 12 12 N 1.46499 * 109.47575 * 239.99930 * 2 1 3 13 13 C 1.34774 * 120.00198 * 84.99530 * 12 2 1 14 14 O 1.21280 * 119.99643 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00079 * 179.97438 * 13 12 2 16 16 H 1.09004 * 108.56768 * 56.72863 * 15 13 12 17 17 C 1.54565 * 108.75797 * 298.54995 * 15 13 12 18 18 S 1.84211 * 101.32650 * 215.93422 * 17 15 13 19 19 C 1.84071 * 93.91190 * 32.25799 * 18 17 15 20 20 N 1.45956 * 108.72416 * 174.82832 * 15 13 12 21 21 C 1.34775 * 122.70488 * 299.85327 * 20 15 13 22 22 O 1.21286 * 119.99985 * 0.07139 * 21 20 15 23 23 C 1.50695 * 120.00327 * 180.02562 * 21 20 15 24 24 C 1.54265 * 110.03368 * 297.16870 * 23 21 20 25 25 C 1.54888 * 104.19451 * 217.10067 * 24 23 21 26 26 C 1.54889 * 102.74830 * 37.94582 * 25 24 23 27 27 C 1.53876 * 110.03574 * 179.97438 * 23 21 20 28 28 H 1.09004 * 109.46984 * 60.00512 * 1 2 3 29 29 H 1.09004 * 109.46614 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47662 * 300.00146 * 1 2 3 31 31 H 0.96998 * 119.99875 * 180.02562 * 7 6 4 32 32 H 0.96998 * 119.99935 * 265.00048 * 12 2 1 33 33 H 1.08997 * 111.05015 * 97.91581 * 17 15 13 34 34 H 1.09005 * 111.08098 * 333.96315 * 17 15 13 35 35 H 1.09002 * 110.77876 * 84.85078 * 19 18 17 36 36 H 1.08998 * 110.77542 * 208.09185 * 19 18 17 37 37 H 1.09004 * 110.01638 * 58.61155 * 23 21 20 38 38 H 1.08994 * 110.48303 * 335.78185 * 24 23 21 39 39 H 1.09005 * 110.48619 * 98.42390 * 24 23 21 40 40 H 1.08995 * 110.75623 * 279.62516 * 25 24 23 41 41 H 1.09007 * 110.90911 * 156.32969 * 25 24 23 42 42 H 1.09007 * 110.48333 * 203.37871 * 26 25 24 43 43 H 1.08995 * 110.60077 * 80.78975 * 26 25 24 44 44 H 1.09003 * 110.03024 * 238.56996 * 27 23 21 45 45 H 1.08998 * 110.02883 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8276 -0.4190 5.2204 11 1 1.8278 -2.5196 4.0083 12 7 2.0185 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6501 -0.7286 -3.5873 16 1 2.0015 -1.5820 -3.7850 17 6 4.0809 -1.2450 -3.3130 18 16 4.8705 -1.0156 -4.9615 19 6 3.8683 0.4720 -5.3749 20 7 2.5760 0.1880 -4.7207 21 6 1.4178 0.7342 -5.1411 22 8 0.3806 0.4704 -4.5703 23 6 1.4115 1.6735 -6.3194 24 6 2.2468 2.9300 -5.9982 25 6 1.4714 4.0856 -6.6782 26 6 -0.0075 3.6924 -6.4386 27 6 -0.0219 2.1578 -6.5999 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7092 1.1619 3.4843 32 1 2.2492 -1.6317 -1.1525 33 1 4.0695 -2.2967 -3.0272 34 1 4.5770 -0.6405 -2.5536 35 1 4.3224 1.3717 -4.9597 36 1 3.7432 0.5663 -6.4535 37 1 1.8143 1.1713 -7.1990 38 1 2.2995 3.0878 -4.9210 39 1 3.2475 2.8412 -6.4211 40 1 1.6930 4.1244 -7.7447 41 1 1.6993 5.0397 -6.2028 42 1 -0.6519 4.1601 -7.1831 43 1 -0.3210 3.9735 -5.4333 44 1 -0.3139 1.8915 -7.6158 45 1 -0.7129 1.7137 -5.8834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171631459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:22 Heat of formation + Delta-G solvation = -93.167157 kcal Electronic energy + Delta-G solvation = -26868.916547 eV Core-core repulsion = 23204.371653 eV Total energy + Delta-G solvation = -3664.544894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86044 -40.33180 -38.13440 -37.29284 -36.60984 -34.47487 -32.97204 -30.72366 -29.86055 -29.53660 -28.40863 -27.38347 -25.51526 -23.65047 -22.12959 -21.68540 -21.10103 -20.15608 -19.14251 -18.70429 -18.07673 -17.88507 -17.08003 -16.62372 -16.54335 -16.16251 -15.91698 -15.67173 -15.47799 -14.96576 -14.62372 -14.53166 -14.41877 -14.25460 -14.07743 -13.74743 -13.31666 -13.10849 -12.98331 -12.84764 -12.76931 -12.72922 -12.31693 -12.31132 -12.17989 -12.07836 -12.00782 -11.85982 -11.69285 -11.44842 -11.16526 -10.96264 -10.69299 -10.60711 -9.92645 -9.80385 -8.95113 -8.19107 -6.37752 0.52300 0.82249 1.38644 1.44763 1.46771 1.54699 1.66335 1.74356 2.33271 2.56665 3.08749 3.12174 3.39194 3.58207 3.66406 3.71845 3.92382 3.98279 4.16634 4.23942 4.35293 4.41086 4.43016 4.51212 4.53839 4.64024 4.66936 4.77581 4.85448 4.93451 4.96356 5.04815 5.05645 5.19235 5.22699 5.36799 5.40014 5.46039 5.56850 5.61449 5.84572 6.04355 6.08829 6.69575 6.86384 7.06846 7.29492 7.48864 8.87306 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003751 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.922073 B = 7463.378032 C = 8788.187713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.278 3.722 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.079 0.921 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.701 5.701 13 C 0.494 3.506 14 O -0.579 6.579 15 C 0.120 3.880 16 H 0.114 0.886 17 C -0.058 4.058 18 S -0.248 6.248 19 C 0.151 3.849 20 N -0.601 5.601 21 C 0.530 3.470 22 O -0.567 6.567 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.128 4.128 27 C -0.120 4.120 28 H -0.001 1.001 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.036 0.964 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.095 0.905 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 -1.551 -22.037 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.174 3.826 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.351 5.351 13 C 0.277 3.723 14 O -0.459 6.459 15 C 0.011 3.989 16 H 0.132 0.868 17 C -0.207 4.207 18 S -0.022 6.022 19 C -0.082 4.082 20 N -0.337 5.337 21 C 0.319 3.681 22 O -0.444 6.444 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.165 4.165 27 C -0.158 4.158 28 H 0.018 0.982 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.170 0.830 37 H 0.155 0.845 38 H 0.055 0.945 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.113 0.887 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.926 -1.355 -22.254 23.662 hybrid contribution -1.058 0.140 2.197 2.442 sum 6.868 -1.216 -20.057 21.235 Atomic orbital electron populations 1.21878 0.99024 0.99115 0.98918 1.18264 0.90511 0.91822 0.81991 0.98661 1.21506 1.32733 1.13698 0.90470 0.90299 1.25860 0.94777 0.95532 1.02505 1.70070 1.37009 1.24057 1.24690 0.85347 0.78791 0.78625 0.77280 1.19179 1.21384 1.18808 1.46178 1.65283 1.14136 1.09485 1.21285 0.78000 0.87521 0.85456 1.90636 1.51808 1.18254 1.85181 1.21306 0.99285 0.93420 0.84918 0.86810 1.24521 0.91034 1.08145 0.97005 1.88203 1.54668 1.38255 1.21046 1.24600 0.82667 0.97402 1.03487 1.48324 1.08066 1.47153 1.30113 1.21228 0.81419 0.79824 0.85587 1.90697 1.33329 1.61728 1.58689 1.22059 0.99394 0.95392 0.95339 1.22444 0.99869 0.92966 1.00042 1.22486 0.93335 0.97310 1.01985 1.22385 0.98364 0.94972 1.00796 1.22186 0.94635 0.96304 1.02686 0.98190 0.94314 0.91471 0.92579 0.75951 0.82264 0.88145 0.88074 0.83037 0.84503 0.94472 0.87531 0.88156 0.91330 0.89513 0.94664 0.88652 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.48 16 2 C 0.28 14.88 2.56 44.25 0.11 14.99 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.30 16 4 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 5 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 6 C 0.01 0.72 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 8 Si 0.98 41.97 29.54 68.60 2.03 43.99 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 N -0.70 -29.73 4.98 -446.11 -2.22 -31.95 16 13 C 0.49 20.47 6.27 87.66 0.55 21.02 16 14 O -0.58 -29.83 14.57 13.05 0.19 -29.64 16 15 C 0.12 3.51 2.87 44.88 0.13 3.63 16 16 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 17 C -0.06 -1.24 6.89 72.51 0.50 -0.74 16 18 S -0.25 -4.62 23.43 -56.49 -1.32 -5.94 16 19 C 0.15 2.71 5.87 127.56 0.75 3.45 16 20 N -0.60 -16.30 2.74 -806.43 -2.21 -18.51 16 21 C 0.53 16.65 6.02 87.66 0.53 17.17 16 22 O -0.57 -24.18 14.08 13.04 0.18 -24.00 16 23 C -0.10 -2.11 2.50 -10.82 -0.03 -2.14 16 24 C -0.12 -2.19 5.16 31.67 0.16 -2.02 16 25 C -0.11 -1.83 6.91 31.88 0.22 -1.61 16 26 C -0.13 -2.65 6.83 31.69 0.22 -2.44 16 27 C -0.12 -2.73 6.40 31.34 0.20 -2.53 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.41 14.02 8.47 -92.71 -0.79 13.23 16 33 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 2.38 7.85 -2.38 -0.02 2.37 16 35 H 0.10 1.79 7.90 -2.39 -0.02 1.77 16 36 H 0.15 1.59 6.95 -2.39 -0.02 1.57 16 37 H 0.14 1.73 7.58 -2.38 -0.02 1.71 16 38 H 0.04 1.03 7.85 -2.39 -0.02 1.01 16 39 H 0.11 1.23 7.40 -2.38 -0.02 1.21 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.56 6.39 -2.39 -0.02 1.54 16 Total: -1.00 -79.63 366.90 1.78 -77.85 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.21 Total: 27.08 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 4.68 Total: 14.72 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.19 Total: -104.08 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: 0.37 Total: -53.63 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -1.32 Total: -5.94 kcal Total: -79.63 1.78 -77.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171631459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.315 kcal (2) G-P(sol) polarization free energy of solvation -79.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds