Wall clock time and date at job start Tue Mar 31 2020 14:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65604 * 120.00038 * 2 1 4 4 O 1.42101 * 106.40324 * 311.46609 * 3 2 1 5 5 O 1.42095 * 106.40272 * 178.54542 * 3 2 1 6 6 C 1.76203 * 107.21322 * 65.00511 * 3 2 1 7 7 C 1.38255 * 120.00212 * 90.00124 * 6 3 2 8 8 C 1.38212 * 120.00284 * 179.97438 * 7 6 3 9 9 C 1.38253 * 119.99859 * 0.02562 * 8 7 6 10 10 C 1.38215 * 120.00294 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00248 * 179.70563 * 10 9 8 12 12 H 1.08994 * 109.46875 * 160.00370 * 11 10 9 13 13 C 1.53001 * 109.46861 * 279.99771 * 11 10 9 14 14 N 1.46889 * 109.47161 * 39.99698 * 11 10 9 15 15 C 1.46899 * 111.00018 * 155.00339 * 14 11 10 16 16 C 1.53000 * 109.47270 * 180.02562 * 15 14 11 17 17 C 1.53003 * 109.47534 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47712 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99728 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00100 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99921 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99734 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46657 * 60.00270 * 22 20 18 24 24 H 1.48507 * 109.46838 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47673 * 300.00225 * 22 20 18 26 26 C 1.38217 * 120.00048 * 269.97249 * 6 3 2 27 27 H 1.08994 * 109.47517 * 59.99642 * 1 2 3 28 28 H 1.08998 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47021 * 299.99361 * 1 2 3 30 30 H 0.96998 * 120.00278 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.99755 * 359.97438 * 7 6 3 32 32 H 1.08002 * 119.99776 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.00399 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47159 * 300.00374 * 13 11 10 35 35 H 1.09005 * 109.46972 * 59.99874 * 13 11 10 36 36 H 1.08994 * 109.47105 * 180.02562 * 13 11 10 37 37 H 1.00901 * 111.00522 * 278.95329 * 14 11 10 38 38 H 1.08998 * 109.46948 * 299.99813 * 15 14 11 39 39 H 1.08992 * 109.47236 * 59.99955 * 15 14 11 40 40 H 1.09006 * 109.46970 * 300.00046 * 16 15 14 41 41 H 1.08999 * 109.47372 * 60.00027 * 16 15 14 42 42 H 1.09000 * 109.46985 * 300.00510 * 17 16 15 43 43 H 1.09003 * 109.46996 * 59.99270 * 17 16 15 44 44 H 0.97000 * 119.99994 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.99701 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2330 -1.0215 5 8 3.6737 1.1003 0.0346 6 6 1.9378 2.2413 1.5255 7 6 2.7383 2.0154 2.6299 8 6 2.4600 2.6490 3.8263 9 6 1.3809 3.5082 3.9189 10 6 0.5806 3.7341 2.8148 11 6 -0.5996 4.6656 2.9175 12 1 -0.8882 4.9975 1.9203 13 6 -1.7730 3.9319 3.5702 14 7 -0.2346 5.8302 3.7349 15 6 -1.0673 6.9922 3.3971 16 6 -0.6581 8.1829 4.2665 17 6 -1.5249 9.3935 3.9142 18 6 -1.1224 10.5661 4.7709 19 1 -0.3280 10.4585 5.4947 20 6 -1.7682 11.7761 4.6308 21 7 -2.7358 11.9069 3.7498 22 14 -1.2696 13.2294 5.6933 23 1 0.1587 13.5544 5.4487 24 1 -2.1100 14.4047 5.3504 25 1 -1.4605 12.8845 7.1250 26 6 0.8593 3.1008 1.6179 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.5810 1.3439 2.5577 32 1 3.0851 2.4722 4.6891 33 1 1.1631 4.0030 4.8538 34 1 -2.0438 3.0677 2.9637 35 1 -1.4843 3.5998 4.5675 36 1 -2.6267 4.6054 3.6441 37 1 -0.2962 5.6151 4.7188 38 1 -0.9283 7.2455 2.3461 39 1 -2.1152 6.7532 3.5777 40 1 -0.7967 7.9298 5.3176 41 1 0.3898 8.4219 4.0854 42 1 -1.3859 9.6463 2.8631 43 1 -2.5730 9.1548 4.0948 44 1 -3.1899 12.7584 3.6510 45 1 0.2341 3.2773 0.7551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178646011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:26 Heat of formation + Delta-G solvation = -63.972663 kcal Electronic energy + Delta-G solvation = -24910.909848 eV Core-core repulsion = 21247.630922 eV Total energy + Delta-G solvation = -3663.278926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.86091 -37.53776 -37.03077 -36.13917 -35.41065 -34.11280 -32.37136 -31.51890 -30.49439 -28.87267 -26.43695 -25.99618 -24.11137 -23.48823 -22.25878 -21.28013 -20.20626 -19.61361 -18.08811 -17.77135 -16.70703 -16.44696 -16.21725 -15.79969 -15.37597 -15.00113 -14.82985 -14.52538 -14.33284 -14.10670 -13.98854 -13.60363 -13.31410 -13.25608 -12.73936 -12.56200 -12.50129 -12.36635 -12.25741 -12.20090 -12.01618 -11.91496 -11.63688 -11.42350 -11.08260 -10.98933 -10.83731 -10.59813 -10.52881 -10.06543 -9.72547 -9.58656 -9.37441 -9.12776 -9.01999 -8.34375 -8.27752 -5.99521 -4.01742 0.06541 0.60036 1.04179 2.66700 3.22414 3.33738 3.37972 3.40625 3.49011 3.97625 4.27575 4.46603 4.53519 4.56255 4.59777 4.76622 4.87671 4.98497 5.04485 5.06612 5.14907 5.27827 5.30584 5.36224 5.37162 5.51152 5.62230 5.66386 5.77039 5.81197 5.81425 5.96037 6.07496 6.20908 6.28293 6.46273 6.58949 6.68615 6.72785 7.11137 7.24317 7.50928 7.67686 7.82526 8.00538 8.43610 9.05159 9.62208 11.11890 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.002058 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.924241 B =13601.831112 C =13675.609393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.698 3.302 4 O -0.955 6.955 5 O -0.961 6.961 6 C -0.676 4.676 7 C -0.027 4.027 8 C -0.140 4.140 9 C -0.040 4.040 10 C -0.079 4.079 11 C 0.116 3.884 12 H 0.090 0.910 13 C -0.178 4.178 14 N -0.684 5.684 15 C 0.059 3.941 16 C -0.107 4.107 17 C 0.023 3.977 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.020 4.020 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.418 0.582 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.338 0.662 38 H 0.069 0.931 39 H 0.027 0.973 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.261 0.739 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -29.562 -3.885 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.787 3.213 4 O -0.944 6.944 5 O -0.951 6.951 6 C -0.764 4.764 7 C -0.047 4.047 8 C -0.159 4.159 9 C -0.058 4.058 10 C -0.081 4.081 11 C 0.006 3.994 12 H 0.108 0.892 13 C -0.237 4.237 14 N -0.314 5.314 15 C -0.069 4.069 16 C -0.145 4.145 17 C -0.015 4.015 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.040 4.040 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.252 0.748 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.660 -28.749 -5.048 29.939 hybrid contribution -0.772 0.401 1.774 1.976 sum 5.888 -28.348 -3.274 29.137 Atomic orbital electron populations 1.21509 0.78357 1.04273 1.02247 1.55335 1.16255 1.24391 1.92152 1.01793 0.72834 0.72674 0.74022 1.93602 1.78625 1.68244 1.53971 1.93590 1.30784 1.83446 1.87271 1.30713 1.07681 1.16578 1.21438 1.20842 0.96134 0.96289 0.91395 1.21294 0.98362 0.98216 0.98055 1.21316 0.92553 0.93301 0.98670 1.20010 0.97510 0.97206 0.93348 1.20501 0.90275 0.89528 0.99127 0.89152 1.22495 0.98887 1.01158 1.01119 1.60662 1.57611 1.04238 1.08875 1.22181 0.93694 0.90038 1.00991 1.21625 1.01039 0.94473 0.97343 1.19056 0.94462 0.91027 0.96956 1.21208 1.18524 0.95581 1.20502 0.92752 1.25030 0.95091 0.98858 0.95543 1.69952 1.23545 1.25256 1.34829 0.86651 0.78546 0.81963 0.80790 1.20212 1.21306 1.20287 1.20773 0.93627 0.92020 0.97600 0.91169 0.89885 0.92064 0.74810 0.84565 0.85086 0.85085 0.92057 0.92300 0.91631 0.84393 0.91287 0.95434 0.93685 0.92535 0.96554 0.96834 0.92962 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.14 59.85 0.67 1.03 16 2 N -1.12 -6.37 6.19 -16.64 -0.10 -6.47 16 3 S 2.70 25.57 5.74 -107.50 -0.62 24.96 16 4 O -0.95 -12.05 17.01 -57.17 -0.97 -13.03 16 5 O -0.96 -11.45 17.28 -57.17 -0.99 -12.43 16 6 C -0.68 -6.65 5.95 -39.58 -0.24 -6.89 16 7 C -0.03 -0.25 9.52 -39.58 -0.38 -0.63 16 8 C -0.14 -1.26 10.05 -39.59 -0.40 -1.66 16 9 C -0.04 -0.40 9.33 -39.58 -0.37 -0.77 16 10 C -0.08 -0.86 4.96 -104.62 -0.52 -1.37 16 11 C 0.12 1.30 2.79 -68.87 -0.19 1.11 16 12 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 13 C -0.18 -1.65 9.14 37.16 0.34 -1.31 16 14 N -0.68 -9.20 5.70 -107.97 -0.62 -9.81 16 15 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 16 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 22 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 C -0.02 -0.21 9.15 -39.58 -0.36 -0.57 16 27 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.42 1.48 8.96 -34.47 -0.31 1.17 16 31 H 0.14 1.03 7.62 -52.49 -0.40 0.63 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 1.17 7.24 -52.49 -0.38 0.79 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 36 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 37 H 0.34 4.11 7.82 -39.29 -0.31 3.80 16 38 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 39 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.14 1.29 7.60 -52.49 -0.40 0.89 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -35.61 385.69 -11.08 -46.69 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.15 Total: -0.53 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -2.16 Total: -25.60 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.02 Total: -42.66 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.96 Total: -25.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 25.57 SS G_CDS: -0.62 Total: 24.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.61 -11.08 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178646011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.280 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds