Wall clock time and date at job start Tue Mar 31 2020 14:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65604 * 119.99889 * 2 1 4 4 O 1.42098 * 106.39966 * 311.46207 * 3 2 1 5 5 O 1.42101 * 106.39991 * 178.54409 * 3 2 1 6 6 C 1.76197 * 107.21659 * 65.00417 * 3 2 1 7 7 C 1.38228 * 120.00244 * 89.99897 * 6 3 2 8 8 C 1.38232 * 120.00272 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00055 * 359.96146 * 8 7 6 10 10 C 1.50695 * 120.00469 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46914 * 340.00015 * 10 9 8 12 12 C 1.53000 * 109.47212 * 99.99633 * 10 9 8 13 13 N 1.46905 * 109.47374 * 219.99927 * 10 9 8 14 14 C 1.46902 * 110.99800 * 154.99628 * 13 10 9 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99310 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99452 * 21 19 17 25 25 C 1.38243 * 119.99713 * 0.27191 * 9 8 7 26 26 C 1.38230 * 119.99886 * 359.51460 * 25 9 8 27 27 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46868 * 299.99691 * 1 2 3 29 29 H 1.09002 * 109.47432 * 59.99784 * 1 2 3 30 30 H 0.96995 * 120.00141 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.99725 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.00317 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47051 * 60.00651 * 12 10 9 34 34 H 1.09002 * 109.46808 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47129 * 300.00287 * 12 10 9 36 36 H 1.00898 * 110.99743 * 31.04677 * 13 10 9 37 37 H 1.09000 * 109.47263 * 60.00269 * 14 13 10 38 38 H 1.09001 * 109.47582 * 299.99548 * 14 13 10 39 39 H 1.08993 * 109.46955 * 300.00347 * 15 14 13 40 40 H 1.09000 * 109.47050 * 60.00176 * 15 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 42 42 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 43 43 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 44 44 H 1.07997 * 119.99776 * 179.73094 * 25 9 8 45 45 H 1.07999 * 120.00418 * 180.25529 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0215 5 8 3.6738 1.1003 0.0346 6 6 1.9379 2.2414 1.5254 7 6 2.7382 2.0156 2.6296 8 6 2.4599 2.6493 3.8262 9 6 1.3817 3.5095 3.9183 10 6 1.0779 4.1999 5.2229 11 1 1.5557 3.6593 6.0400 12 6 1.6122 5.6329 5.1781 13 7 -0.3753 4.2257 5.4365 14 6 -0.6955 4.3227 6.8670 15 6 -2.2145 4.3475 7.0490 16 6 -2.5479 4.4480 8.5388 17 6 -4.0440 4.4718 8.7183 18 1 -4.6922 4.4200 7.8559 19 6 -4.5854 4.5597 9.9832 20 7 -3.7961 4.6222 11.0334 21 14 -6.4399 4.5885 10.2057 22 1 -6.9419 3.1992 10.3569 23 1 -6.7807 5.3729 11.4196 24 1 -7.0712 5.2163 9.0172 25 6 0.5785 3.7316 2.8153 26 6 0.8594 3.1013 1.6176 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.5809 1.3440 2.5574 32 1 3.0849 2.4726 4.6890 33 1 1.1344 6.1735 4.3612 34 1 1.3929 6.1321 6.1219 35 1 2.6905 5.6137 5.0196 36 1 -0.8162 3.4186 5.0213 37 1 -0.2661 5.2381 7.2741 38 1 -0.2804 3.4620 7.3915 39 1 -2.6292 5.2083 6.5246 40 1 -2.6442 3.4323 6.6418 41 1 -2.1332 3.5869 9.0629 42 1 -2.1181 5.3630 8.9465 43 1 -4.1769 4.6836 11.9234 44 1 -0.2664 4.4003 2.8885 45 1 0.2344 3.2780 0.7547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178649563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:32 Heat of formation + Delta-G solvation = -64.654391 kcal Electronic energy + Delta-G solvation = -24743.104708 eV Core-core repulsion = 21079.796220 eV Total energy + Delta-G solvation = -3663.308488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95591 -37.58875 -36.97106 -36.19703 -35.42040 -34.15192 -32.44512 -31.39713 -30.53824 -29.11266 -26.43605 -26.15011 -24.21691 -23.29066 -22.33526 -20.74668 -20.16650 -19.88669 -18.43767 -17.90264 -16.73353 -16.52313 -16.15342 -15.98034 -15.20306 -14.92582 -14.78675 -14.55556 -14.22205 -14.18915 -13.94103 -13.72076 -13.55308 -13.28409 -12.92459 -12.59708 -12.44339 -12.36308 -12.23206 -12.03973 -12.02181 -11.83317 -11.62164 -11.51871 -11.21207 -10.94432 -10.82067 -10.60979 -10.53006 -10.08130 -9.75169 -9.54275 -9.35821 -9.32731 -9.08454 -8.37721 -8.34748 -6.02252 -4.04500 0.01346 0.47474 1.00181 2.61390 3.14210 3.30106 3.36483 3.40050 3.43863 3.98575 4.11832 4.37552 4.44495 4.52667 4.57055 4.59265 4.99711 5.02336 5.03775 5.17858 5.22510 5.30484 5.32051 5.33662 5.41458 5.59821 5.63356 5.67679 5.74482 5.77222 5.84818 5.91199 6.12106 6.18991 6.28026 6.44622 6.52794 6.64806 6.69808 7.07961 7.20549 7.47698 7.64983 7.79279 7.97731 8.40728 9.02634 9.59666 11.09179 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002059 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.560116 B =13592.592456 C =14419.112545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.699 3.301 4 O -0.957 6.957 5 O -0.961 6.961 6 C -0.683 4.683 7 C -0.020 4.020 8 C -0.136 4.136 9 C -0.025 4.025 10 C 0.113 3.887 11 H 0.056 0.944 12 C -0.136 4.136 13 N -0.683 5.683 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.121 4.121 26 C -0.023 4.023 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.419 0.581 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.340 0.660 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.145 0.855 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.949 -8.609 -21.413 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.947 6.947 5 O -0.952 6.952 6 C -0.770 4.770 7 C -0.039 4.039 8 C -0.156 4.156 9 C -0.026 4.026 10 C 0.003 3.997 11 H 0.074 0.926 12 C -0.193 4.193 13 N -0.315 5.315 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.140 4.140 26 C -0.042 4.042 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.253 0.747 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.162 0.838 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.290 -7.435 -21.988 27.257 hybrid contribution -0.925 -1.190 1.423 2.073 sum 13.366 -8.625 -20.565 25.999 Atomic orbital electron populations 1.21529 0.78208 1.04452 1.02267 1.55309 1.16347 1.24339 1.92095 1.01737 0.72799 0.72690 0.73975 1.93590 1.78685 1.68393 1.54004 1.93592 1.30852 1.83446 1.87280 1.30775 1.07996 1.16769 1.21505 1.20837 0.96099 0.95828 0.91143 1.21212 0.98185 0.97922 0.98258 1.20463 0.93399 0.92980 0.95781 1.20624 0.90391 0.96407 0.92300 0.92639 1.21783 0.99646 0.94690 1.03220 1.60729 1.06845 1.47399 1.16514 1.22210 0.98938 1.00220 0.85599 1.21620 0.91315 1.00719 1.00766 1.19062 0.96394 0.97086 0.89003 1.21245 0.92071 1.50175 0.92255 0.92676 1.25034 0.98012 0.95363 0.96140 1.69962 1.34675 1.50738 0.98216 0.86589 0.85748 0.77995 0.77645 1.20705 1.21223 1.19846 1.21296 1.00531 1.00379 0.91788 1.20977 0.93321 0.91711 0.98240 0.89782 0.91918 0.91191 0.74750 0.84355 0.85032 0.91685 0.91629 0.92682 0.84213 0.91219 0.95605 0.92463 0.93682 0.96856 0.96564 0.93014 0.83751 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.14 59.85 0.67 1.04 16 2 N -1.12 -6.36 6.19 -16.63 -0.10 -6.46 16 3 S 2.70 23.86 5.74 -107.50 -0.62 23.24 16 4 O -0.96 -11.08 17.01 -57.17 -0.97 -12.06 16 5 O -0.96 -10.88 17.28 -57.17 -0.99 -11.86 16 6 C -0.68 -6.27 5.95 -39.58 -0.24 -6.50 16 7 C -0.02 -0.18 9.52 -39.59 -0.38 -0.56 16 8 C -0.14 -1.28 9.67 -39.58 -0.38 -1.66 16 9 C -0.03 -0.26 4.72 -104.62 -0.49 -0.76 16 10 C 0.11 1.26 2.82 -68.86 -0.19 1.07 16 11 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 12 C -0.14 -1.46 9.39 37.16 0.35 -1.11 16 13 N -0.68 -9.00 5.69 -107.94 -0.61 -9.61 16 14 C 0.06 0.95 5.48 -3.82 -0.02 0.93 16 15 C -0.11 -2.11 5.41 -26.73 -0.14 -2.26 16 16 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.12 -1.20 9.00 -39.58 -0.36 -1.56 16 26 C -0.02 -0.21 9.52 -39.58 -0.38 -0.59 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.42 1.54 8.96 -34.47 -0.31 1.24 16 31 H 0.14 1.03 7.62 -52.49 -0.40 0.63 16 32 H 0.13 1.00 8.04 -52.49 -0.42 0.58 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.34 4.25 7.98 -39.29 -0.31 3.94 16 37 H 0.07 1.15 7.44 -51.93 -0.39 0.77 16 38 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.14 1.40 7.71 -52.49 -0.40 0.99 16 45 H 0.14 1.08 7.62 -52.49 -0.40 0.68 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -34.62 386.03 -11.06 -45.68 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.18 Total: -0.20 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -2.12 Total: -24.97 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.02 Total: -42.18 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -1.96 Total: -23.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 23.86 SS G_CDS: -0.62 Total: 23.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.62 -11.06 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.978 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds