Wall clock time and date at job start Tue Mar 31 2020 14:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65604 * 119.99889 * 2 1 4 4 O 1.42098 * 106.39966 * 311.46207 * 3 2 1 5 5 O 1.42101 * 106.39991 * 178.54409 * 3 2 1 6 6 C 1.76197 * 107.21659 * 65.00417 * 3 2 1 7 7 C 1.38228 * 120.00244 * 89.99897 * 6 3 2 8 8 C 1.38232 * 120.00272 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00055 * 359.96146 * 8 7 6 10 10 C 1.50695 * 120.00469 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46914 * 340.00015 * 10 9 8 12 12 C 1.53000 * 109.47212 * 99.99633 * 10 9 8 13 13 N 1.46905 * 109.47374 * 219.99927 * 10 9 8 14 14 C 1.46902 * 110.99800 * 154.99628 * 13 10 9 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99310 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99452 * 21 19 17 25 25 C 1.38243 * 119.99713 * 0.27191 * 9 8 7 26 26 C 1.38230 * 119.99886 * 359.51460 * 25 9 8 27 27 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46868 * 299.99691 * 1 2 3 29 29 H 1.09002 * 109.47432 * 59.99784 * 1 2 3 30 30 H 0.96995 * 120.00141 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.99725 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.00317 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47051 * 60.00651 * 12 10 9 34 34 H 1.09002 * 109.46808 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47129 * 300.00287 * 12 10 9 36 36 H 1.00898 * 110.99743 * 31.04677 * 13 10 9 37 37 H 1.09000 * 109.47263 * 60.00269 * 14 13 10 38 38 H 1.09001 * 109.47582 * 299.99548 * 14 13 10 39 39 H 1.08993 * 109.46955 * 300.00347 * 15 14 13 40 40 H 1.09000 * 109.47050 * 60.00176 * 15 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 42 42 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 43 43 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 44 44 H 1.07997 * 119.99776 * 179.73094 * 25 9 8 45 45 H 1.07999 * 120.00418 * 180.25529 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0215 5 8 3.6738 1.1003 0.0346 6 6 1.9379 2.2414 1.5254 7 6 2.7382 2.0156 2.6296 8 6 2.4599 2.6493 3.8262 9 6 1.3817 3.5095 3.9183 10 6 1.0779 4.1999 5.2229 11 1 1.5557 3.6593 6.0400 12 6 1.6122 5.6329 5.1781 13 7 -0.3753 4.2257 5.4365 14 6 -0.6955 4.3227 6.8670 15 6 -2.2145 4.3475 7.0490 16 6 -2.5479 4.4480 8.5388 17 6 -4.0440 4.4718 8.7183 18 1 -4.6922 4.4200 7.8559 19 6 -4.5854 4.5597 9.9832 20 7 -3.7961 4.6222 11.0334 21 14 -6.4399 4.5885 10.2057 22 1 -6.9419 3.1992 10.3569 23 1 -6.7807 5.3729 11.4196 24 1 -7.0712 5.2163 9.0172 25 6 0.5785 3.7316 2.8153 26 6 0.8594 3.1013 1.6176 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.5809 1.3440 2.5574 32 1 3.0849 2.4726 4.6890 33 1 1.1344 6.1735 4.3612 34 1 1.3929 6.1321 6.1219 35 1 2.6905 5.6137 5.0196 36 1 -0.8162 3.4186 5.0213 37 1 -0.2661 5.2381 7.2741 38 1 -0.2804 3.4620 7.3915 39 1 -2.6292 5.2083 6.5246 40 1 -2.6442 3.4323 6.6418 41 1 -2.1332 3.5869 9.0629 42 1 -2.1181 5.3630 8.9465 43 1 -4.1769 4.6836 11.9234 44 1 -0.2664 4.4003 2.8885 45 1 0.2344 3.2780 0.7547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178649563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:31 Heat of formation + Delta-G solvation = -89.504853 kcal Electronic energy + Delta-G solvation = -24744.182304 eV Core-core repulsion = 21079.796220 eV Total energy + Delta-G solvation = -3664.386085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72711 -38.38573 -38.06003 -37.00454 -35.92143 -35.82780 -34.08831 -32.16221 -31.81541 -30.17470 -27.84637 -26.84396 -25.31189 -24.26490 -23.62994 -21.96164 -21.49763 -20.56616 -19.10770 -18.61545 -18.47222 -17.47001 -17.21661 -16.80767 -16.54033 -16.13893 -15.73079 -15.60763 -15.21697 -15.06338 -14.75192 -14.61421 -14.45466 -14.21353 -13.93000 -13.79620 -13.60436 -13.43868 -13.27314 -13.18487 -13.12156 -12.83069 -12.74012 -12.54449 -12.48129 -12.32718 -12.23484 -12.11752 -11.73262 -11.50062 -11.36856 -11.10721 -10.55670 -10.55293 -10.23685 -10.05385 -9.45344 -8.20300 -6.31087 -0.67184 -0.26929 0.28659 1.40280 1.41491 1.52778 1.99605 2.40515 2.42402 2.75324 3.10174 3.13049 3.28589 3.53063 3.80392 3.91598 4.19345 4.23107 4.24355 4.27329 4.34752 4.44846 4.49608 4.66663 4.67883 4.70262 4.76817 4.88760 4.89369 4.93369 4.98307 5.00975 5.06074 5.12821 5.13243 5.23400 5.32393 5.42212 5.53171 5.75511 5.80718 5.86312 6.02379 6.08954 6.26734 6.41565 6.86162 7.38245 8.91554 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002059 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.560116 B =13592.592456 C =14419.112545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.110 6.110 3 S 2.718 3.282 4 O -0.986 6.986 5 O -0.987 6.987 6 C -0.683 4.683 7 C -0.026 4.026 8 C -0.139 4.139 9 C -0.034 4.034 10 C 0.115 3.885 11 H 0.059 0.941 12 C -0.134 4.134 13 N -0.680 5.680 14 C 0.073 3.927 15 C -0.091 4.091 16 C 0.025 3.975 17 C -0.542 4.542 18 H 0.060 0.940 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.263 1.263 25 C -0.127 4.127 26 C -0.028 4.028 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.429 0.571 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.345 0.655 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.053 0.947 40 H 0.050 0.950 41 H -0.010 1.010 42 H -0.009 1.009 43 H 0.263 0.737 44 H 0.145 0.855 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.480 -9.533 -22.440 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.873 5.873 3 S 2.808 3.192 4 O -0.976 6.976 5 O -0.978 6.978 6 C -0.771 4.771 7 C -0.045 4.045 8 C -0.158 4.158 9 C -0.035 4.035 10 C 0.006 3.994 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.312 5.312 14 C -0.056 4.056 15 C -0.129 4.129 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.188 1.188 25 C -0.146 4.146 26 C -0.047 4.047 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.266 0.734 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.164 0.836 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.009 0.991 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.162 0.838 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.834 -8.371 -23.040 28.148 hybrid contribution -0.752 -0.939 1.721 2.100 sum 13.081 -9.310 -21.319 26.689 Atomic orbital electron populations 1.21761 0.77175 1.06124 1.02419 1.55018 1.16913 1.23674 1.91720 1.00972 0.72050 0.72794 0.73408 1.93553 1.79070 1.69689 1.55268 1.93551 1.32725 1.83920 1.87575 1.30831 1.07953 1.16751 1.21563 1.21089 0.96470 0.95972 0.90943 1.21418 0.98014 0.97369 0.99000 1.20389 0.94192 0.93655 0.95258 1.20612 0.88810 0.96885 0.93104 0.92337 1.21773 1.00642 0.94275 1.02495 1.60625 1.08567 1.47892 1.14165 1.21883 0.96104 0.99987 0.87625 1.21357 0.94119 1.00769 0.96674 1.18971 0.95163 0.94729 0.92417 1.21703 0.93525 1.50080 0.92678 0.92218 1.25991 1.03354 0.94803 0.95828 1.70092 1.36994 1.51582 0.98770 0.85450 0.79357 0.78414 0.77855 1.19707 1.20808 1.18760 1.21350 1.00650 1.00597 0.92030 1.21147 0.93576 0.91542 0.98468 0.87400 0.91558 0.91374 0.73420 0.82826 0.83380 0.92028 0.92645 0.91138 0.83580 0.91739 0.95724 0.92791 0.93090 0.99120 0.99055 0.92796 0.83770 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 11.14 127.77 1.42 1.93 16 2 N -1.11 -10.72 6.19 -206.53 -1.28 -12.00 16 3 S 2.72 45.16 5.74 -56.49 -0.32 44.84 16 4 O -0.99 -22.15 17.01 -128.00 -2.18 -24.33 16 5 O -0.99 -21.41 17.28 -128.00 -2.21 -23.62 16 6 C -0.68 -11.58 5.95 22.27 0.13 -11.45 16 7 C -0.03 -0.42 9.52 22.27 0.21 -0.21 16 8 C -0.14 -2.34 9.67 22.27 0.22 -2.12 16 9 C -0.03 -0.65 4.72 -19.87 -0.09 -0.74 16 10 C 0.12 2.43 2.82 44.17 0.12 2.56 16 11 H 0.06 1.23 7.66 -2.38 -0.02 1.21 16 12 C -0.13 -2.74 9.39 71.98 0.68 -2.07 16 13 N -0.68 -17.22 5.69 -495.42 -2.82 -20.03 16 14 C 0.07 2.34 5.48 86.31 0.47 2.81 16 15 C -0.09 -3.63 5.41 30.60 0.17 -3.46 16 16 C 0.02 1.29 4.97 29.85 0.15 1.44 16 17 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 19 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 20 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 21 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 25 C -0.13 -2.37 9.00 22.27 0.20 -2.17 16 26 C -0.03 -0.48 9.52 22.27 0.21 -0.27 16 27 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.54 8.10 -2.39 -0.02 0.52 16 30 H 0.43 2.37 8.96 -96.75 -0.87 1.50 16 31 H 0.15 1.98 7.62 -2.91 -0.02 1.96 16 32 H 0.15 1.93 8.04 -2.91 -0.02 1.90 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.35 8.18 7.98 -89.70 -0.72 7.46 16 37 H 0.06 2.14 7.44 -2.39 -0.02 2.12 16 38 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.14 2.64 7.71 -2.91 -0.02 2.62 16 45 H 0.15 2.17 7.62 -2.91 -0.02 2.15 16 Total: -1.00 -73.82 386.03 -2.51 -76.33 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.59 Total: 13.11 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 4.58 Total: -43.90 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -3.81 Total: -88.46 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -4.39 Total: -47.95 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 45.16 SS G_CDS: -0.32 Total: 44.84 kcal Total: -73.82 -2.51 -76.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178649563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.180 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds