Wall clock time and date at job start Tue Mar 31 2020 14:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46998 * 2 1 4 4 N 1.46895 * 109.47521 * 119.99888 * 2 1 3 5 5 C 1.46898 * 111.00058 * 275.00616 * 4 2 1 6 6 C 1.53008 * 109.47162 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.46979 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00288 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99911 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00386 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99807 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47113 * 90.00206 * 11 9 7 13 13 H 1.48500 * 109.46942 * 209.99707 * 11 9 7 14 14 H 1.48498 * 109.47103 * 330.00038 * 11 9 7 15 15 C 1.50702 * 109.47088 * 240.00473 * 2 1 3 16 16 C 1.38232 * 120.00078 * 99.99394 * 15 2 1 17 17 C 1.38241 * 119.99497 * 180.02562 * 16 15 2 18 18 C 1.38226 * 120.00207 * 0.02562 * 17 16 15 19 19 S 1.76204 * 120.00179 * 179.97438 * 18 17 16 20 20 O 1.42105 * 106.39972 * 336.45789 * 19 18 17 21 21 O 1.42098 * 106.40426 * 203.53961 * 19 18 17 22 22 N 1.65595 * 107.21987 * 89.99674 * 19 18 17 23 23 C 1.46498 * 119.99850 * 89.99964 * 22 19 18 24 24 C 1.46498 * 120.00275 * 270.00253 * 22 19 18 25 25 C 1.38233 * 120.00232 * 0.24953 * 18 17 16 26 26 C 1.38239 * 119.99435 * 280.01967 * 15 2 1 27 27 H 1.09001 * 109.47376 * 299.99463 * 1 2 3 28 28 H 1.08999 * 109.47934 * 60.00028 * 1 2 3 29 29 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.00904 * 110.99714 * 38.95278 * 4 2 1 31 31 H 1.09003 * 109.46912 * 299.99539 * 5 4 2 32 32 H 1.08995 * 109.47640 * 59.99376 * 5 4 2 33 33 H 1.09003 * 109.46658 * 299.99483 * 6 5 4 34 34 H 1.08993 * 109.47026 * 59.99226 * 6 5 4 35 35 H 0.96997 * 120.00265 * 180.02562 * 10 9 7 36 36 H 1.07990 * 120.00248 * 0.02562 * 16 15 2 37 37 H 1.08001 * 119.99374 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.47170 * 0.02562 * 23 22 19 39 39 H 1.09003 * 109.46878 * 120.00317 * 23 22 19 40 40 H 1.08998 * 109.47513 * 240.00301 * 23 22 19 41 41 H 1.09009 * 109.46956 * 90.00041 * 24 22 19 42 42 H 1.08994 * 109.47112 * 209.99740 * 24 22 19 43 43 H 1.09001 * 109.47155 * 330.00448 * 24 22 19 44 44 H 1.08001 * 120.00579 * 179.72524 * 25 18 17 45 45 H 1.08002 * 120.00219 * 359.97438 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5963 -0.5328 3.5742 7 6 2.6612 0.4060 4.7511 8 1 2.3659 1.4384 4.6353 9 6 3.0976 -0.0529 5.9758 10 7 3.1538 0.7663 7.0031 11 14 3.6077 -1.8387 6.1763 12 1 5.0579 -1.9747 5.8873 13 1 3.3374 -2.2773 7.5690 14 1 2.8334 -2.6837 5.2320 15 6 2.0323 -0.7103 -1.2305 16 6 2.4586 0.0196 -2.3243 17 6 2.9188 -0.6321 -3.4533 18 6 2.9523 -2.0135 -3.4885 19 16 3.5384 -2.8442 -4.9277 20 8 3.3712 -1.9384 -6.0098 21 8 2.9612 -4.1425 -4.9047 22 7 5.1704 -3.0546 -4.7419 23 6 5.6841 -4.2664 -4.0987 24 6 6.1004 -2.0289 -5.2207 25 6 2.5207 -2.7435 -2.3968 26 6 2.0663 -2.0918 -1.2655 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4496 -1.4979 1.4100 31 1 2.7588 1.0463 2.1182 32 1 1.0871 0.6163 2.5525 33 1 1.9203 -1.3567 3.8030 34 1 3.5917 -0.9262 3.3682 35 1 3.4611 0.4435 7.8646 36 1 2.4320 1.0988 -2.2969 37 1 3.2515 -0.0619 -4.3080 38 1 4.8502 -4.9072 -3.8123 39 1 6.3304 -4.8012 -4.7949 40 1 6.2542 -3.9929 -3.2109 41 1 6.2871 -1.3078 -4.4248 42 1 7.0396 -2.4982 -5.5134 43 1 5.6664 -1.5175 -6.0798 44 1 2.5427 -3.8229 -2.4260 45 1 1.7332 -2.6621 -0.4109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180537944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:13 Heat of formation + Delta-G solvation = -72.698424 kcal Electronic energy + Delta-G solvation = -25262.129585 eV Core-core repulsion = 21598.472281 eV Total energy + Delta-G solvation = -3663.657303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63997 -38.45728 -38.02195 -37.13473 -36.93603 -35.37670 -33.61218 -32.06811 -31.26034 -29.57581 -28.96212 -26.16369 -25.59650 -24.82677 -23.83376 -22.25500 -21.71830 -20.12995 -19.05118 -18.96580 -18.47185 -17.33490 -17.11430 -16.52962 -16.20208 -16.14906 -15.73231 -15.42234 -15.39402 -15.08130 -14.86017 -14.69817 -14.40899 -14.25070 -14.02066 -13.91778 -13.61668 -13.58097 -13.28507 -13.23313 -13.21362 -12.92626 -12.88772 -12.60801 -12.54384 -12.44211 -12.11101 -11.98154 -11.89815 -11.72400 -11.50405 -11.41541 -10.77599 -10.20927 -10.02271 -10.00485 -9.36205 -8.30286 -6.34911 -0.70951 -0.19266 0.34056 1.37722 1.38504 1.50877 1.89883 2.36265 2.46667 2.72181 3.05658 3.19863 3.21074 3.71765 3.78738 3.87059 3.93200 4.12317 4.22285 4.38907 4.40845 4.45025 4.52344 4.55882 4.58988 4.67571 4.74937 4.77421 4.82994 4.95089 4.96098 4.97375 4.99478 5.05157 5.07529 5.11511 5.20307 5.29635 5.47806 5.51417 5.54904 5.63853 5.85758 6.09853 6.24225 6.47670 6.74068 7.30227 8.86354 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002544 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.160349 B =11005.106398 C =11789.352860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 H 0.090 0.910 4 N -0.686 5.686 5 C 0.089 3.911 6 C -0.004 4.004 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.004 3.996 10 N -0.952 5.952 11 Si 0.954 3.046 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.245 1.245 15 C -0.012 4.012 16 C -0.143 4.143 17 C -0.027 4.027 18 C -0.689 4.689 19 S 2.710 3.290 20 O -0.981 6.981 21 O -0.982 6.982 22 N -1.003 6.003 23 C 0.076 3.924 24 C 0.073 3.927 25 C -0.030 4.030 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.345 0.655 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.148 0.852 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -8.659 -27.133 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 H 0.108 0.892 4 N -0.317 5.317 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.777 3.223 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.168 1.168 15 C -0.013 4.013 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.777 4.777 19 S 2.802 3.198 20 O -0.971 6.971 21 O -0.973 6.973 22 N -0.844 5.844 23 C -0.069 4.069 24 C -0.071 4.071 25 C -0.049 4.049 26 C -0.148 4.148 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.166 0.834 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.177 -8.833 -27.830 29.370 hybrid contribution -0.692 0.219 1.746 1.891 sum 2.485 -8.614 -26.084 27.582 Atomic orbital electron populations 1.22417 0.94666 1.03069 1.02960 1.20616 0.93937 0.97553 0.87682 0.89232 1.60595 1.57361 1.10057 1.03639 1.21640 0.98363 0.94740 0.89233 1.19429 0.96673 0.95634 0.92461 1.21414 1.43781 0.97052 0.94908 0.94929 1.26009 0.95054 1.02808 0.95370 1.70066 1.49157 1.37952 1.02058 0.85602 0.79444 0.79614 0.77593 1.19389 1.21147 1.16817 1.20287 0.92546 0.94266 0.94171 1.21391 1.00445 1.01374 0.92964 1.21064 0.93207 0.92147 0.98164 1.30860 1.19968 1.06011 1.20854 1.01240 0.72504 0.72615 0.73490 1.93524 1.85534 1.66376 1.51676 1.93533 1.76753 1.39591 1.87378 1.57111 1.23402 1.29219 1.74655 1.21820 1.01362 0.84884 0.98835 1.21836 0.94574 0.90524 1.00184 1.21067 0.92255 1.00564 0.91044 1.21238 1.00830 0.94358 0.98364 0.92389 0.90634 0.91577 0.83633 0.92550 0.95879 0.96120 0.96129 0.92471 0.83320 0.82916 0.90026 0.89820 0.90602 0.91591 0.88256 0.90160 0.83383 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.14 71.98 0.66 -2.87 16 2 C 0.11 2.64 2.79 44.17 0.12 2.76 16 3 H 0.09 2.13 7.66 -2.38 -0.02 2.11 16 4 N -0.69 -19.90 5.70 -495.45 -2.83 -22.73 16 5 C 0.09 3.30 5.42 86.31 0.47 3.77 16 6 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 7 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 0.26 5.47 84.65 0.46 0.72 16 10 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 11 Si 0.95 43.86 27.47 68.60 1.88 45.74 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 15 C -0.01 -0.26 4.96 -19.87 -0.10 -0.36 16 16 C -0.14 -2.83 9.67 22.27 0.22 -2.61 16 17 C -0.03 -0.51 9.52 22.27 0.21 -0.30 16 18 C -0.69 -14.00 5.97 22.27 0.13 -13.86 16 19 S 2.71 53.80 5.69 -56.49 -0.32 53.47 16 20 O -0.98 -23.44 15.89 -128.00 -2.03 -25.48 16 21 O -0.98 -24.03 15.84 -128.00 -2.03 -26.06 16 22 N -1.00 -14.31 3.58 -562.69 -2.02 -16.33 16 23 C 0.08 0.82 10.67 127.77 1.36 2.19 16 24 C 0.07 0.75 10.70 127.77 1.37 2.12 16 25 C -0.03 -0.62 9.52 22.27 0.21 -0.41 16 26 C -0.13 -2.81 9.33 22.27 0.21 -2.60 16 27 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.27 8.13 -2.38 -0.02 1.25 16 30 H 0.34 9.20 7.82 -89.69 -0.70 8.50 16 31 H 0.06 2.18 8.06 -2.39 -0.02 2.16 16 32 H 0.02 0.86 7.44 -2.39 -0.02 0.84 16 33 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 34 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.15 2.31 8.04 -2.92 -0.02 2.28 16 37 H 0.15 2.35 7.62 -2.91 -0.02 2.33 16 38 H 0.08 0.97 6.91 -2.39 -0.02 0.96 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 42 H 0.10 0.59 8.07 -2.39 -0.02 0.57 16 43 H 0.08 0.89 7.02 -2.39 -0.02 0.88 16 44 H 0.15 2.59 7.61 -2.91 -0.02 2.57 16 45 H 0.14 2.76 7.25 -2.91 -0.02 2.74 16 Total: -1.00 -73.96 378.72 -1.12 -75.08 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.22 Total: 16.97 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 5.70 Total: -41.59 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.54 Total: -98.14 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -4.06 Total: -51.54 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 16 Polarization: 53.80 SS G_CDS: -0.32 Total: 53.47 kcal Total: -73.96 -1.12 -75.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180537944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.382 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds