Wall clock time and date at job start Tue Mar 31 2020 14:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47335 * 2 1 4 4 C 1.50707 * 109.46995 * 240.00155 * 2 1 3 5 5 C 1.38238 * 119.99669 * 106.34669 * 4 2 1 6 6 C 1.38232 * 119.99467 * 179.97438 * 5 4 2 7 7 C 1.38237 * 120.00301 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.99989 * 179.97438 * 7 6 5 9 9 N 1.65603 * 107.22006 * 89.99963 * 8 7 6 10 10 O 1.42098 * 106.40383 * 336.46118 * 8 7 6 11 11 O 1.42096 * 106.40228 * 203.54112 * 8 7 6 12 12 C 1.38233 * 119.99640 * 0.25380 * 7 6 5 13 13 C 1.38227 * 119.99962 * 286.36387 * 4 2 1 14 14 N 1.46904 * 109.47300 * 120.00228 * 2 1 3 15 15 C 1.46898 * 110.99679 * 307.78954 * 14 2 1 16 16 C 1.46899 * 110.99850 * 183.83845 * 14 2 1 17 17 C 1.52994 * 109.47192 * 189.99766 * 16 14 2 18 18 C 1.52996 * 109.47435 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.47156 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00145 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99728 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00087 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99779 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46942 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46940 * 119.99958 * 23 21 19 26 26 H 1.48490 * 109.47173 * 240.00041 * 23 21 19 27 27 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47213 * 299.99933 * 1 2 3 29 29 H 1.08999 * 109.47200 * 60.00206 * 1 2 3 30 30 H 1.08000 * 120.00053 * 359.97438 * 5 4 2 31 31 H 1.08001 * 119.99666 * 180.02562 * 6 5 4 32 32 H 0.96996 * 120.00193 * 239.99947 * 9 8 7 33 33 H 0.97000 * 119.99807 * 59.99185 * 9 8 7 34 34 H 1.08006 * 119.99486 * 179.72699 * 12 7 6 35 35 H 1.08003 * 120.00432 * 0.02562 * 13 4 2 36 36 H 1.09002 * 109.46803 * 65.68241 * 15 14 2 37 37 H 1.08998 * 109.47021 * 185.67731 * 15 14 2 38 38 H 1.08996 * 109.47299 * 305.67995 * 15 14 2 39 39 H 1.09002 * 109.47386 * 310.00192 * 16 14 2 40 40 H 1.09009 * 109.47060 * 69.99697 * 16 14 2 41 41 H 1.09002 * 109.47303 * 300.00477 * 17 16 14 42 42 H 1.09004 * 109.47063 * 59.99556 * 17 16 14 43 43 H 1.08994 * 109.47217 * 299.99876 * 18 17 16 44 44 H 1.08997 * 109.47260 * 60.00423 * 18 17 16 45 45 H 0.97005 * 119.99966 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.5804 0.0149 -2.2720 6 6 3.0416 -0.6368 -3.4004 7 6 2.9543 -2.0137 -3.4877 8 16 3.5416 -2.8442 -4.9264 9 7 5.1361 -3.2079 -4.6660 10 8 3.5144 -1.8905 -5.9795 11 8 2.8512 -4.0848 -4.9834 12 6 2.4010 -2.7383 -2.4487 13 6 1.9447 -2.0871 -1.3179 14 7 2.0197 -0.6926 1.1994 15 6 1.4029 -0.1422 2.4137 16 6 3.4853 -0.6331 1.2801 17 6 3.9732 -1.5654 2.3907 18 6 5.4996 -1.5041 2.4743 19 6 5.9801 -2.4229 3.5679 20 1 5.2681 -2.9939 4.1452 21 6 7.3289 -2.5346 3.8314 22 7 8.1960 -1.8389 3.1287 23 14 7.9246 -3.6730 5.1874 24 1 6.7587 -4.3368 5.8241 25 1 8.8249 -4.7027 4.6092 26 1 8.6635 -2.8851 6.2062 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.6482 1.0906 -2.2039 31 1 3.4701 -0.0702 -4.2139 32 1 5.8173 -2.8544 -5.2591 33 1 5.3887 -3.7743 -3.9202 34 1 2.3288 -3.8137 -2.5188 35 1 1.5159 -2.6537 -0.5046 36 1 0.3333 -0.3519 2.4049 37 1 1.8560 -0.6022 3.2919 38 1 1.5616 0.9357 2.4454 39 1 3.9146 -0.9460 0.3283 40 1 3.7959 0.3883 1.5005 41 1 3.5438 -1.2526 3.3425 42 1 3.6624 -2.5868 2.1703 43 1 5.9285 -1.8173 1.5226 44 1 5.8106 -0.4829 2.6946 45 1 9.1450 -1.9178 3.3138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198734809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:44 Heat of formation + Delta-G solvation = -59.648219 kcal Electronic energy + Delta-G solvation = -25629.920597 eV Core-core repulsion = 21966.829193 eV Total energy + Delta-G solvation = -3663.091404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94942 -37.65969 -37.35411 -36.01153 -34.18767 -33.37434 -32.63069 -31.22060 -31.09971 -29.35253 -27.13818 -25.71160 -23.62147 -22.97383 -22.34754 -20.23952 -19.91856 -19.65645 -18.32788 -17.56536 -17.09157 -16.43411 -16.26264 -15.98594 -15.22988 -14.78635 -14.67300 -14.50034 -14.39692 -14.03745 -13.71935 -13.41402 -13.19457 -12.85621 -12.42270 -12.38056 -12.27590 -12.26298 -12.17492 -12.00557 -11.81998 -11.52211 -11.43116 -11.27197 -11.19394 -10.94892 -10.84995 -10.59392 -10.51304 -10.44653 -9.66444 -9.41568 -9.23962 -9.10411 -9.07208 -8.37827 -8.21560 -6.02903 -4.04963 0.25796 0.68726 1.23204 2.98237 3.28657 3.34706 3.36391 3.40597 3.65848 3.97370 4.23459 4.43190 4.48265 4.70074 4.78283 5.05054 5.08380 5.22781 5.30682 5.33396 5.34826 5.50116 5.55662 5.61179 5.64755 5.73717 5.79435 5.84641 5.87445 5.97116 5.97689 6.08247 6.11254 6.25892 6.38974 6.63859 6.71616 6.74152 6.87616 7.05100 7.24441 7.28344 7.64984 7.78992 7.97293 8.40560 9.02420 9.59342 11.08525 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010092 B = 0.003396 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.902871 B = 8242.841576 C =10319.331111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.109 3.891 3 H 0.050 0.950 4 C -0.013 4.013 5 C -0.140 4.140 6 C -0.020 4.020 7 C -0.684 4.684 8 S 2.707 3.293 9 N -1.245 6.245 10 O -0.966 6.966 11 O -0.962 6.962 12 C -0.025 4.025 13 C -0.108 4.108 14 N -0.534 5.534 15 C 0.020 3.980 16 C 0.054 3.946 17 C -0.103 4.103 18 C 0.022 3.978 19 C -0.518 4.518 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.421 0.579 33 H 0.421 0.579 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.012 0.988 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 3.070 -13.404 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.068 0.932 4 C -0.014 4.014 5 C -0.159 4.159 6 C -0.039 4.039 7 C -0.772 4.772 8 S 2.794 3.206 9 N -0.917 5.917 10 O -0.956 6.956 11 O -0.952 6.952 12 C -0.045 4.045 13 C -0.127 4.127 14 N -0.259 5.259 15 C -0.128 4.128 16 C -0.073 4.073 17 C -0.141 4.141 18 C -0.015 4.015 19 C -0.556 4.556 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.250 0.750 33 H 0.249 0.751 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.444 2.464 -14.238 19.737 hybrid contribution 1.274 0.615 1.698 2.211 sum -12.169 3.079 -12.540 17.743 Atomic orbital electron populations 1.21915 0.93167 1.03059 1.01977 1.20695 0.95716 0.95020 0.88502 0.93175 1.20153 0.92840 0.94335 0.94094 1.21166 1.00534 1.00264 0.93920 1.20798 0.93800 0.92170 0.97152 1.30768 1.19016 1.05757 1.21637 1.01350 0.72366 0.73589 0.73273 1.53244 1.27483 1.66931 1.44048 1.93582 1.86122 1.63011 1.52899 1.93608 1.72238 1.43183 1.86128 1.20986 0.92123 1.00063 0.91292 1.21198 0.99724 0.94092 0.97648 1.62153 1.07972 1.54606 1.01153 1.22475 0.99797 0.97239 0.93266 1.22339 0.84882 0.98955 1.01115 1.21654 0.99291 0.97862 0.95324 1.19063 0.88465 0.96975 0.97012 1.21277 0.91840 1.24977 1.17499 0.92635 1.25023 0.97018 0.95949 0.96468 1.69975 1.01809 1.41342 1.40460 0.86553 0.78801 0.80742 0.82019 1.19715 1.21007 1.21053 0.91371 0.91705 0.92204 0.85323 0.84401 0.74982 0.75081 0.84225 0.84092 0.91521 0.90291 0.95906 0.91278 0.95338 0.93346 0.92627 0.96730 0.96915 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.62 37.16 0.32 -1.02 16 2 C 0.11 1.26 2.27 -68.86 -0.16 1.10 16 3 H 0.05 0.58 7.94 -51.93 -0.41 0.16 16 4 C -0.01 -0.16 3.51 -104.62 -0.37 -0.53 16 5 C -0.14 -1.56 9.67 -39.58 -0.38 -1.95 16 6 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 7 C -0.68 -7.62 5.97 -39.58 -0.24 -7.86 16 8 S 2.71 27.66 6.28 -107.50 -0.68 26.99 16 9 N -1.24 -8.99 9.53 60.35 0.57 -8.41 16 10 O -0.97 -12.16 17.28 -57.17 -0.99 -13.15 16 11 O -0.96 -12.59 17.28 -57.17 -0.99 -13.58 16 12 C -0.03 -0.29 9.52 -39.59 -0.38 -0.67 16 13 C -0.11 -1.32 9.09 -39.59 -0.36 -1.68 16 14 N -0.53 -7.26 4.13 -236.28 -0.97 -8.24 16 15 C 0.02 0.25 8.69 60.06 0.52 0.77 16 16 C 0.05 0.90 4.80 -3.83 -0.02 0.88 16 17 C -0.10 -2.07 5.10 -26.74 -0.14 -2.21 16 18 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 27 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.06 0.55 6.44 -51.93 -0.33 0.22 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.13 1.19 7.99 -52.49 -0.42 0.77 16 31 H 0.14 1.27 7.62 -52.49 -0.40 0.87 16 32 H 0.42 2.30 8.96 -34.47 -0.31 1.99 16 33 H 0.42 2.56 8.96 -34.47 -0.31 2.25 16 34 H 0.14 1.41 7.61 -52.48 -0.40 1.01 16 35 H 0.14 1.69 7.92 -52.48 -0.42 1.28 16 36 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 37 H 0.08 1.06 6.09 -51.93 -0.32 0.74 16 38 H 0.02 0.27 8.12 -51.93 -0.42 -0.16 16 39 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 40 H 0.03 0.49 8.12 -51.92 -0.42 0.07 16 41 H 0.05 0.95 6.37 -51.93 -0.33 0.62 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -35.02 377.20 -10.61 -45.63 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.84 Total: 1.21 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.12 Total: -26.63 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.34 Total: -42.56 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.98 Total: -26.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 27.66 SS G_CDS: -0.68 Total: 26.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.02 -10.61 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198734809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.020 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds