Wall clock time and date at job start Tue Mar 31 2020 15:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47023 * 2 1 4 4 C 1.53004 * 109.46987 * 120.00091 * 2 1 3 5 5 C 1.53000 * 109.47152 * 65.00172 * 4 2 1 6 6 N 1.46496 * 109.47060 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00386 * 269.99786 * 6 5 4 8 8 C 1.50698 * 109.47050 * 258.85515 * 7 6 5 9 9 H 1.07994 * 120.00172 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99696 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46910 * 59.99744 * 12 10 8 14 14 H 1.48493 * 109.47217 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47029 * 300.00000 * 12 10 8 16 16 C 1.34784 * 119.99850 * 89.99718 * 6 5 4 17 17 O 1.21680 * 120.00067 * 1.71014 * 16 6 5 18 18 C 1.46683 * 119.99860 * 181.70367 * 16 6 5 19 19 C 1.35657 * 126.13448 * 172.89108 * 18 16 6 20 20 N 1.30936 * 114.20036 * 180.02562 * 19 18 16 21 21 C 1.29433 * 117.36071 * 0.02562 * 20 19 18 22 22 C 1.50701 * 124.80561 * 179.73341 * 21 20 19 23 23 H 1.09003 * 109.47194 * 165.02205 * 22 21 20 24 24 C 1.52995 * 109.46944 * 285.02200 * 22 21 20 25 25 O 1.42903 * 109.46890 * 45.02625 * 22 21 20 26 26 S 1.70955 * 110.39160 * 359.97438 * 21 20 19 27 27 H 1.08992 * 109.47385 * 299.99679 * 1 2 3 28 28 H 1.08998 * 109.46863 * 60.00366 * 1 2 3 29 29 H 1.09009 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47282 * 239.99921 * 2 1 3 31 31 H 1.09008 * 109.46898 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47501 * 299.99495 * 3 2 1 33 33 H 1.08995 * 109.47283 * 59.99991 * 3 2 1 34 34 H 1.08998 * 109.47055 * 305.00097 * 4 2 1 35 35 H 1.08995 * 109.46980 * 185.00091 * 4 2 1 36 36 H 1.08998 * 109.47202 * 60.00015 * 5 4 2 37 37 H 1.09007 * 109.46750 * 299.99827 * 5 4 2 38 38 H 1.09003 * 109.46519 * 18.84862 * 7 6 5 39 39 H 1.08996 * 109.47678 * 138.85071 * 7 6 5 40 40 H 0.97001 * 119.99860 * 180.02562 * 11 10 8 41 41 H 1.08008 * 122.90278 * 0.03864 * 19 18 16 42 42 H 1.09001 * 109.47523 * 60.00391 * 24 22 21 43 43 H 1.09004 * 109.46916 * 180.02562 * 24 22 21 44 44 H 1.08994 * 109.47283 * 299.99868 * 24 22 21 45 45 H 0.96700 * 113.99635 * 299.99213 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 7 2.1241 -2.8862 2.3838 7 6 3.4523 -3.5043 2.3813 8 6 3.3141 -4.9911 2.1781 9 1 2.3349 -5.4316 2.0627 10 6 4.4380 -5.7889 2.1394 11 7 5.6305 -5.2523 2.2793 12 14 4.2668 -7.6320 1.8881 13 1 3.5956 -7.8943 0.5897 14 1 5.6132 -8.2583 1.8843 15 1 3.4554 -8.2085 2.9901 16 6 1.3518 -2.9531 3.4864 17 8 0.2363 -2.4670 3.4783 18 6 1.8559 -3.6122 4.6960 19 6 1.2469 -3.6339 5.9080 20 7 1.9058 -4.2924 6.8281 21 6 3.0312 -4.8309 6.4832 22 6 3.9263 -5.6182 7.4052 23 1 4.6561 -6.1737 6.8161 24 6 4.6556 -4.6601 8.3490 25 8 3.1370 -6.5316 8.1699 26 16 3.3617 -4.5167 4.8356 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9562 0.8899 34 1 1.6053 -0.2618 2.1370 35 1 3.1262 -0.6444 1.2952 36 1 2.0699 -2.6550 0.3003 37 1 0.5489 -2.2724 1.1420 38 1 4.0484 -3.0809 1.5729 39 1 3.9444 -3.3121 3.3347 40 1 6.4212 -5.8136 2.2517 41 1 0.3001 -3.1499 6.0977 42 1 3.9258 -4.1046 8.9381 43 1 5.3034 -5.2296 9.0155 44 1 5.2576 -3.9635 7.7656 45 1 2.4650 -6.1059 8.7197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282912729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:24 Heat of formation + Delta-G solvation = -64.178241 kcal Electronic energy + Delta-G solvation = -26344.151632 eV Core-core repulsion = 22680.863792 eV Total energy + Delta-G solvation = -3663.287841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.51763 -38.79832 -36.84215 -36.42149 -34.99752 -32.92795 -31.37927 -30.03415 -28.56642 -27.30242 -27.06095 -25.51446 -23.53726 -23.36891 -22.20847 -20.21766 -19.76093 -18.50378 -17.69024 -16.88752 -16.41870 -16.05318 -15.40616 -15.05845 -14.73681 -14.69457 -14.59565 -14.18836 -13.80170 -13.66791 -13.41121 -13.26044 -12.93200 -12.58138 -12.46369 -12.26382 -12.11204 -12.06273 -11.85842 -11.64259 -11.24855 -11.10702 -11.08462 -10.98056 -10.84393 -10.59015 -10.45241 -10.41086 -10.28141 -10.18372 -10.05032 -9.34257 -9.06403 -8.55667 -8.50199 -8.18492 -7.79116 -6.52827 -4.54756 1.02155 2.19432 2.61676 3.10114 3.13576 3.14556 3.20188 3.75687 3.92437 4.10298 4.47304 4.79710 4.82226 4.98913 5.05934 5.08122 5.17399 5.25904 5.33931 5.57141 5.64559 5.67878 5.75931 5.82857 5.86149 5.90777 5.94511 6.01240 6.05273 6.10086 6.18942 6.19926 6.25742 6.32161 6.41664 6.55420 6.60150 6.77646 6.80972 7.27804 7.44281 7.60771 7.77812 8.05210 8.37767 8.46092 8.83128 9.03850 10.50058 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.004782 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.981514 B = 5854.395217 C = 7432.199983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.121 3.879 6 N -0.596 5.596 7 C 0.225 3.775 8 C -0.534 4.534 9 H 0.070 0.930 10 C 0.078 3.922 11 N -0.869 5.869 12 Si 0.889 3.111 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.267 1.267 16 C 0.596 3.404 17 O -0.562 6.562 18 C -0.320 4.320 19 C 0.091 3.909 20 N -0.494 5.494 21 C -0.117 4.117 22 C 0.189 3.811 23 H 0.111 0.889 24 C -0.175 4.175 25 O -0.555 6.555 26 S 0.396 5.604 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.274 0.726 41 H 0.169 0.831 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 5.701 1.514 5.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.168 4.168 5 C -0.002 4.002 6 N -0.325 5.325 7 C 0.103 3.897 8 C -0.578 4.578 9 H 0.088 0.912 10 C -0.130 4.130 11 N -0.505 5.505 12 Si 0.715 3.285 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.192 1.192 16 C 0.384 3.616 17 O -0.444 6.444 18 C -0.446 4.446 19 C -0.072 4.072 20 N -0.210 5.210 21 C -0.385 4.385 22 C 0.127 3.873 23 H 0.129 0.871 24 C -0.234 4.234 25 O -0.360 6.360 26 S 0.665 5.335 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.187 0.813 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.195 5.071 1.201 5.215 hybrid contribution -1.168 -0.186 0.168 1.195 sum -0.973 4.885 1.369 5.166 Atomic orbital electron populations 1.21884 0.95288 1.02109 1.01238 1.21045 0.95898 0.95948 0.98344 1.21822 1.00894 0.96163 1.01359 1.22019 1.01090 0.95783 0.97878 1.21415 1.00273 0.91050 0.87437 1.48026 1.18843 1.53678 1.11989 1.19666 0.78627 0.93366 0.98045 1.21559 0.94230 0.91737 1.50293 0.91157 1.24949 0.94809 0.99536 0.93688 1.69894 0.97893 1.36712 1.45965 0.86632 0.78076 0.83991 0.79836 1.19534 1.20434 1.19216 1.16814 0.84280 0.78514 0.81973 1.90706 1.19703 1.50021 1.83997 1.25872 1.04450 1.14067 1.00251 1.21731 1.00420 0.98035 0.86971 1.66022 1.07303 1.11497 1.36199 1.29376 0.99279 1.04404 1.05469 1.20291 0.89294 0.88468 0.89248 0.87095 1.22442 1.01064 0.99914 0.99965 1.86501 1.51887 1.36047 1.61588 1.86695 1.13745 1.37954 0.95145 0.92696 0.93242 0.92245 0.91165 0.92769 0.93003 0.92868 0.91820 0.91797 0.90472 0.90343 0.92714 0.94385 0.91608 0.81347 0.91744 0.91335 0.91323 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.95 37.16 0.33 -1.44 16 2 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.14 -1.57 9.19 37.15 0.34 -1.23 16 4 C -0.13 -1.94 5.01 -26.73 -0.13 -2.07 16 5 C 0.12 2.10 5.13 -4.04 -0.02 2.08 16 6 N -0.60 -12.15 2.50 -176.61 -0.44 -12.59 16 7 C 0.23 4.88 4.78 -5.20 -0.02 4.85 16 8 C -0.53 -12.43 6.60 -34.44 -0.23 -12.66 16 9 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 10 C 0.08 1.81 4.87 -17.82 -0.09 1.72 16 11 N -0.87 -20.57 13.29 55.43 0.74 -19.83 16 12 Si 0.89 18.78 29.54 -169.99 -5.02 13.76 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 16 C 0.60 12.95 7.53 -12.85 -0.10 12.86 16 17 O -0.56 -12.95 16.44 5.21 0.09 -12.87 16 18 C -0.32 -6.71 6.20 -37.10 -0.23 -6.94 16 19 C 0.09 1.80 11.10 -18.86 -0.21 1.59 16 20 N -0.49 -9.41 10.33 -11.50 -0.12 -9.53 16 21 C -0.12 -2.14 6.28 -13.29 -0.08 -2.23 16 22 C 0.19 2.95 4.09 -27.89 -0.11 2.84 16 23 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 24 C -0.17 -2.23 9.52 37.16 0.35 -1.88 16 25 O -0.55 -8.80 13.33 -35.23 -0.47 -9.26 16 26 S 0.40 7.96 15.74 -107.50 -1.69 6.26 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.75 6.57 -51.92 -0.34 0.41 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 37 H 0.08 1.39 5.82 -51.92 -0.30 1.09 16 38 H 0.05 1.22 7.99 -51.93 -0.41 0.80 16 39 H 0.04 0.86 4.86 -25.07 -0.12 0.74 16 40 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 41 H 0.17 3.09 8.06 -52.48 -0.42 2.67 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.38 5.16 8.89 45.56 0.41 5.56 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -26.39 378.73 -7.91 -34.30 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.23 Total: 7.95 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.46 Total: -3.90 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.18 Total: -41.95 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.38 Total: -22.13 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -1.69 Total: 6.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.39 -7.91 -34.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282912729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.876 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds