Wall clock time and date at job start Tue Mar 31 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47021 * 2 1 4 4 C 1.52998 * 109.47180 * 120.00079 * 2 1 3 5 5 C 1.53001 * 109.47306 * 64.99504 * 4 2 1 6 6 N 1.46494 * 109.47247 * 179.97438 * 5 4 2 7 7 C 1.46503 * 120.00126 * 85.71492 * 6 5 4 8 8 C 1.50702 * 109.46973 * 89.99709 * 7 6 5 9 9 H 1.08005 * 120.00073 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99997 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00124 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99758 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47257 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47043 * 120.00414 * 12 10 8 15 15 H 1.48503 * 109.46868 * 239.99999 * 12 10 8 16 16 C 1.34775 * 120.00125 * 265.71489 * 6 5 4 17 17 O 1.21691 * 120.00010 * 4.31469 * 16 6 5 18 18 C 1.46684 * 120.00211 * 184.31165 * 16 6 5 19 19 C 1.35667 * 126.13043 * 186.90377 * 18 16 6 20 20 N 1.30942 * 114.18836 * 179.78382 * 19 18 16 21 21 C 1.29438 * 117.36437 * 0.52409 * 20 19 18 22 22 C 1.50697 * 124.80474 * 179.72811 * 21 20 19 23 23 H 1.09000 * 109.47040 * 194.97446 * 22 21 20 24 24 C 1.53003 * 109.46789 * 74.97321 * 22 21 20 25 25 O 1.42903 * 109.47188 * 314.97806 * 22 21 20 26 26 S 1.70945 * 110.38885 * 359.70630 * 21 20 19 27 27 H 1.09000 * 109.46666 * 59.99786 * 1 2 3 28 28 H 1.08998 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47154 * 300.00198 * 1 2 3 30 30 H 1.08994 * 109.47246 * 240.00053 * 2 1 3 31 31 H 1.09004 * 109.46992 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47253 * 300.00097 * 3 2 1 33 33 H 1.09006 * 109.47083 * 60.00369 * 3 2 1 34 34 H 1.09009 * 109.46945 * 304.99962 * 4 2 1 35 35 H 1.08999 * 109.47210 * 185.00271 * 4 2 1 36 36 H 1.09000 * 109.46461 * 60.00321 * 5 4 2 37 37 H 1.08999 * 109.47612 * 300.00520 * 5 4 2 38 38 H 1.09000 * 109.47314 * 210.00048 * 7 6 5 39 39 H 1.08995 * 109.47057 * 330.00509 * 7 6 5 40 40 H 0.96992 * 119.99880 * 179.97438 * 11 10 8 41 41 H 1.07994 * 122.90729 * 359.95977 * 19 18 16 42 42 H 1.09007 * 109.46515 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.47431 * 299.99885 * 24 22 21 44 44 H 1.08997 * 109.47224 * 60.00416 * 24 22 21 45 45 H 0.96695 * 113.99923 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1241 -2.8862 2.3838 7 6 1.3256 -2.8785 3.6121 8 6 0.3962 -4.0649 3.6144 9 1 0.4003 -4.7557 2.7842 10 6 -0.4593 -4.2684 4.6763 11 7 -0.4646 -3.4269 5.6871 12 14 -1.6107 -5.7393 4.6794 13 1 -1.4114 -6.5266 3.4362 14 1 -1.3195 -6.5934 5.8589 15 1 -3.0170 -5.2669 4.7455 16 6 3.3085 -3.5287 2.3541 17 8 4.0080 -3.4695 1.3601 18 6 3.7543 -4.2992 3.5199 19 6 4.9698 -4.8811 3.6769 20 7 5.1204 -5.5103 4.8153 21 6 4.1155 -5.5127 5.6312 22 6 4.1032 -6.1876 6.9786 23 1 3.0765 -6.2663 7.3361 24 6 4.9266 -5.3626 7.9697 25 8 4.6685 -7.4949 6.8617 26 16 2.8047 -4.6415 4.9642 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2617 2.1370 35 1 3.1264 -0.6443 1.2952 36 1 2.0699 -2.6549 0.3003 37 1 0.5489 -2.2724 1.1421 38 1 1.9876 -2.9339 4.4762 39 1 0.7415 -1.9595 3.6600 40 1 -1.0667 -3.5699 6.4339 41 1 5.7470 -4.8274 2.9290 42 1 4.9172 -5.8506 8.9444 43 1 5.9533 -5.2839 7.6122 44 1 4.4955 -4.3655 8.0588 45 1 4.6924 -7.9887 7.6927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282912735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:27 Heat of formation + Delta-G solvation = -58.551773 kcal Electronic energy + Delta-G solvation = -26257.647398 eV Core-core repulsion = 22594.603539 eV Total energy + Delta-G solvation = -3663.043859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.52039 -38.75172 -36.92660 -36.47376 -34.94085 -32.84250 -31.55264 -30.00580 -28.54520 -27.32101 -27.00231 -25.58081 -23.55546 -23.26929 -22.16407 -20.28002 -19.72076 -18.15233 -17.82667 -16.94147 -16.73179 -15.90050 -15.74274 -15.02786 -14.78894 -14.68648 -14.33436 -14.26003 -14.02772 -13.62531 -13.32546 -13.06303 -12.76603 -12.54005 -12.52254 -12.45431 -12.10719 -12.03960 -11.92822 -11.65890 -11.25022 -11.16316 -11.07024 -10.92700 -10.80343 -10.52788 -10.45207 -10.37573 -10.20569 -10.03847 -9.94601 -9.36993 -9.00271 -8.59146 -8.54705 -8.17055 -7.79919 -6.45608 -4.50167 0.96209 2.07921 2.52171 3.07368 3.13469 3.17607 3.22779 3.76379 3.90796 4.13855 4.48427 4.68831 4.88065 5.03079 5.06347 5.08438 5.11973 5.22822 5.33644 5.53961 5.64601 5.70600 5.78625 5.80466 5.86438 5.92314 5.96368 5.97821 6.02147 6.09051 6.20852 6.21920 6.30269 6.35677 6.43544 6.59536 6.63823 6.77103 6.84490 7.30294 7.49923 7.67874 7.73490 8.09118 8.41236 8.52457 8.82670 9.12318 10.58346 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.004798 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.600755 B = 5833.909965 C = 7571.647602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.123 3.877 6 N -0.594 5.594 7 C 0.227 3.773 8 C -0.537 4.537 9 H 0.070 0.930 10 C 0.075 3.925 11 N -0.875 5.875 12 Si 0.889 3.111 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.593 3.407 17 O -0.561 6.561 18 C -0.316 4.316 19 C 0.092 3.908 20 N -0.475 5.475 21 C -0.065 4.065 22 C 0.185 3.815 23 H 0.072 0.928 24 C -0.176 4.176 25 O -0.551 6.551 26 S 0.382 5.618 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.270 0.730 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 2.761 0.919 3.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.167 4.167 5 C 0.000 4.000 6 N -0.324 5.324 7 C 0.105 3.895 8 C -0.579 4.579 9 H 0.088 0.912 10 C -0.131 4.131 11 N -0.511 5.511 12 Si 0.716 3.284 13 H -0.192 1.192 14 H -0.203 1.203 15 H -0.204 1.204 16 C 0.381 3.619 17 O -0.443 6.443 18 C -0.442 4.442 19 C -0.070 4.070 20 N -0.190 5.190 21 C -0.334 4.334 22 C 0.123 3.877 23 H 0.090 0.910 24 C -0.235 4.235 25 O -0.356 6.356 26 S 0.647 5.353 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.189 0.811 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.185 2.932 0.616 3.708 hybrid contribution -0.113 -0.881 0.099 0.893 sum 2.072 2.051 0.716 3.002 Atomic orbital electron populations 1.21907 0.95224 1.02193 1.01360 1.21043 0.95873 0.95903 0.98410 1.21823 1.00842 0.96189 1.01369 1.22002 1.01210 0.95725 0.97772 1.21397 0.99648 0.91151 0.87826 1.48029 1.19157 1.50722 1.14447 1.19692 0.90461 0.99242 0.80109 1.21583 1.20279 1.10073 1.05939 0.91194 1.24922 0.96509 0.96668 0.95003 1.69916 1.37399 1.35639 1.08184 0.86531 0.80673 0.82361 0.78851 1.19217 1.20258 1.20401 1.16845 0.81237 0.78351 0.85451 1.90715 1.55352 1.64686 1.33546 1.25990 1.01004 1.13956 1.03207 1.21882 0.95729 0.94784 0.94638 1.66151 1.30779 1.19380 1.02690 1.28200 0.98966 1.05742 1.00530 1.20021 0.96216 0.82582 0.88847 0.91030 1.22454 1.01896 1.00958 0.98224 1.86678 1.85109 1.27105 1.36685 1.86598 1.06055 1.38090 1.04524 0.93218 0.92111 0.92588 0.91281 0.92882 0.93036 0.92782 0.91689 0.91915 0.90699 0.90066 0.94320 0.92951 0.91973 0.81084 0.91842 0.91137 0.91258 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.95 37.16 0.33 -1.45 16 2 C -0.09 -1.18 2.92 -90.62 -0.26 -1.44 16 3 C -0.14 -1.62 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.97 5.01 -26.73 -0.13 -2.11 16 5 C 0.12 2.17 5.18 -4.04 -0.02 2.15 16 6 N -0.59 -12.28 2.46 -176.61 -0.43 -12.71 16 7 C 0.23 4.98 4.70 -5.19 -0.02 4.96 16 8 C -0.54 -12.56 7.22 -34.44 -0.25 -12.81 16 9 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 10 C 0.08 1.76 5.16 -17.82 -0.09 1.67 16 11 N -0.88 -20.91 13.29 55.43 0.74 -20.18 16 12 Si 0.89 18.76 29.54 -169.99 -5.02 13.74 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 C 0.59 13.02 7.63 -12.85 -0.10 12.92 16 17 O -0.56 -13.06 16.43 5.20 0.09 -12.97 16 18 C -0.32 -6.69 6.22 -37.09 -0.23 -6.92 16 19 C 0.09 1.87 11.10 -18.85 -0.21 1.66 16 20 N -0.47 -9.69 10.49 -11.50 -0.12 -9.82 16 21 C -0.06 -1.23 6.28 -13.29 -0.08 -1.31 16 22 C 0.19 2.85 4.08 -27.88 -0.11 2.73 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 C -0.18 -2.23 9.52 37.16 0.35 -1.88 16 25 O -0.55 -8.35 13.29 -35.23 -0.47 -8.82 16 26 S 0.38 7.72 16.40 -107.50 -1.76 5.96 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.76 6.56 -51.93 -0.34 0.41 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.36 7.35 -51.93 -0.38 0.97 16 37 H 0.08 1.40 6.53 -51.93 -0.34 1.06 16 38 H 0.04 0.89 4.40 -22.81 -0.10 0.79 16 39 H 0.05 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 41 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16 42 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.37 3.49 9.08 45.56 0.41 3.90 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -28.38 380.25 -7.95 -36.33 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.21 Total: 5.84 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.49 Total: -3.11 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.18 Total: -42.70 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.38 Total: -21.79 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.76 Total: 5.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.38 -7.95 -36.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282912735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.221 kcal (2) G-P(sol) polarization free energy of solvation -28.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds