Wall clock time and date at job start Tue Mar 31 2020 15:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46956 * 2 1 4 4 O 1.42899 * 109.47437 * 119.99558 * 2 1 3 5 5 C 1.50698 * 109.47357 * 240.00275 * 2 1 3 6 6 N 1.29424 * 124.80305 * 285.02056 * 5 2 1 7 7 C 1.30941 * 117.36544 * 179.73612 * 6 5 2 8 8 C 1.35661 * 114.19507 * 359.97438 * 7 6 5 9 9 C 1.46680 * 126.13459 * 179.97438 * 8 7 6 10 10 O 1.21689 * 119.99663 * 154.02661 * 9 8 7 11 11 N 1.34771 * 119.99968 * 334.02631 * 9 8 7 12 12 C 1.46500 * 119.99971 * 4.30186 * 11 9 8 13 13 C 1.50705 * 109.47192 * 95.90909 * 12 11 9 14 14 H 1.08002 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00416 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99585 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00183 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46734 * 119.99836 * 17 15 13 20 20 H 1.48496 * 109.47322 * 239.99871 * 17 15 13 21 21 C 1.46502 * 119.99810 * 184.30266 * 11 9 8 22 22 C 1.52996 * 109.47015 * 89.81671 * 21 11 9 23 23 C 1.53001 * 109.47431 * 64.57902 * 22 21 11 24 24 C 1.53006 * 109.46960 * 184.58040 * 22 21 11 25 25 C 1.53005 * 109.47115 * 304.57996 * 22 21 11 26 26 S 1.70955 * 124.80686 * 104.71996 * 5 2 1 27 27 H 1.08994 * 109.47419 * 299.99754 * 1 2 3 28 28 H 1.09000 * 109.47347 * 60.00268 * 1 2 3 29 29 H 1.09000 * 109.46661 * 180.02562 * 1 2 3 30 30 H 0.96702 * 113.99895 * 300.00884 * 4 2 1 31 31 H 1.08001 * 122.90200 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.47232 * 215.90464 * 12 11 9 33 33 H 1.09001 * 109.47465 * 335.90655 * 12 11 9 34 34 H 0.97005 * 119.99602 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.46535 * 209.81357 * 21 11 9 36 36 H 1.08997 * 109.47428 * 329.81395 * 21 11 9 37 37 H 1.09000 * 109.47050 * 60.00322 * 23 22 21 38 38 H 1.09000 * 109.47179 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.47405 * 300.00216 * 23 22 21 40 40 H 1.08998 * 109.46741 * 59.99844 * 24 22 21 41 41 H 1.09005 * 109.46894 * 179.97438 * 24 22 21 42 42 H 1.08993 * 109.47202 * 299.99905 * 24 22 21 43 43 H 1.09002 * 109.47001 * 65.26420 * 25 22 21 44 44 H 1.09000 * 109.47165 * 185.26494 * 25 22 21 45 45 H 1.08998 * 109.46811 * 305.26348 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0324 -0.7103 -1.2305 6 7 2.0190 -1.9934 -1.4000 7 6 2.4884 -2.4559 -2.5315 8 6 2.9312 -1.4973 -3.3831 9 6 3.5058 -1.7210 -4.7140 10 8 3.4349 -0.8506 -5.5614 11 7 4.1122 -2.8905 -4.9982 12 6 4.1152 -3.9730 -4.0110 13 6 2.9835 -4.9239 -4.3047 14 1 2.3274 -4.7400 -5.1427 15 6 2.7851 -6.0280 -3.5031 16 7 3.5837 -6.2516 -2.4825 17 14 1.3819 -7.2062 -3.8668 18 1 0.6359 -6.7340 -5.0608 19 1 1.9291 -8.5615 -4.1297 20 1 0.4656 -7.2601 -2.6995 21 6 4.7685 -3.0793 -6.2943 22 6 6.2292 -2.6350 -6.1959 23 6 6.9746 -3.5457 -5.2182 24 6 6.8835 -2.7244 -7.5761 25 6 6.2903 -1.1906 -5.6950 26 16 2.6940 0.0649 -2.6030 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7210 -0.2700 1.9980 31 1 2.5202 -3.5096 -2.7664 32 1 5.0629 -4.5092 -4.0626 33 1 3.9884 -3.5546 -3.0125 34 1 3.4443 -7.0286 -1.9187 35 1 4.7270 -4.1325 -6.5725 36 1 4.2576 -2.4834 -7.0505 37 1 6.9311 -4.5748 -5.5750 38 1 8.0153 -3.2294 -5.1484 39 1 6.5085 -3.4821 -4.2350 40 1 6.3525 -2.0756 -8.2726 41 1 7.9241 -2.4074 -7.5060 42 1 6.8400 -3.7533 -7.9329 43 1 5.9094 -1.1434 -4.6748 44 1 7.3232 -0.8429 -5.7137 45 1 5.6818 -0.5565 -6.3398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283095327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:32 Heat of formation + Delta-G solvation = -36.135422 kcal Electronic energy + Delta-G solvation = -26866.065207 eV Core-core repulsion = 23203.993395 eV Total energy + Delta-G solvation = -3662.071813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03667 -38.97460 -37.16398 -36.58359 -34.57518 -32.48328 -31.73203 -29.56670 -27.82132 -26.96471 -26.74379 -26.26368 -25.05935 -23.19290 -22.41662 -20.70643 -19.15137 -18.14627 -17.78343 -16.87964 -16.71360 -16.16274 -15.42366 -15.01609 -14.86009 -14.63687 -14.37480 -14.29433 -13.91483 -13.57348 -13.27060 -13.00291 -12.74040 -12.62262 -12.47312 -12.21502 -12.06155 -11.85681 -11.56771 -11.40114 -11.25066 -11.14503 -10.99991 -10.97823 -10.74538 -10.49759 -10.31567 -10.27897 -10.24416 -10.03015 -9.75018 -9.56969 -9.04327 -8.97610 -8.69334 -8.32527 -7.74299 -6.27336 -4.37496 0.73513 1.49350 2.02799 3.07123 3.19636 3.29055 3.32548 3.78046 3.93092 4.19655 4.29064 4.46654 4.78290 4.97161 5.04687 5.16290 5.18160 5.29607 5.37138 5.45417 5.57187 5.75707 5.86127 5.86946 5.91844 5.97084 6.08756 6.11412 6.18832 6.19942 6.29253 6.37401 6.48203 6.54864 6.60873 6.76973 6.84241 6.95684 7.13791 7.44684 7.54530 7.67277 7.92755 8.18495 8.22759 8.68877 8.88687 9.31090 10.77201 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009103 B = 0.005757 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.207646 B = 4862.685398 C = 7085.259215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.187 3.813 3 H 0.073 0.927 4 O -0.545 6.545 5 C 0.027 3.973 6 N -0.446 5.446 7 C 0.086 3.914 8 C -0.277 4.277 9 C 0.593 3.407 10 O -0.566 6.566 11 N -0.574 5.574 12 C 0.206 3.794 13 C -0.549 4.549 14 H 0.066 0.934 15 C 0.070 3.930 16 N -0.878 5.878 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.132 3.868 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.133 4.133 26 S 0.173 5.827 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.379 0.621 31 H 0.238 0.762 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.269 0.731 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 11.151 1.648 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.124 3.876 3 H 0.090 0.910 4 O -0.350 6.350 5 C -0.249 4.249 6 N -0.160 5.160 7 C -0.069 4.069 8 C -0.400 4.400 9 C 0.380 3.620 10 O -0.448 6.448 11 N -0.302 5.302 12 C 0.087 3.913 13 C -0.588 4.588 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.515 5.515 17 Si 0.723 3.277 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.205 1.205 21 C 0.009 3.991 22 C -0.085 4.085 23 C -0.200 4.200 24 C -0.193 4.193 25 C -0.190 4.190 26 S 0.428 5.572 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.226 0.774 31 H 0.254 0.746 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.799 11.796 1.092 11.873 hybrid contribution -0.964 -1.454 0.185 1.754 sum -0.165 10.342 1.277 10.421 Atomic orbital electron populations 1.22484 0.94427 1.04213 1.02670 1.20011 0.93216 0.92600 0.81780 0.90953 1.86710 1.76389 1.57032 1.14893 1.27085 1.03831 0.93755 1.00271 1.66234 1.16795 1.11207 1.21779 1.24335 0.92200 1.04661 0.85690 1.25776 1.15471 0.95547 1.03203 1.16640 0.78014 0.82680 0.84703 1.90722 1.61162 1.44611 1.48319 1.47879 1.51458 1.13710 1.17196 1.20263 0.98811 0.84357 0.87911 1.21513 1.14322 1.08395 1.14522 0.91624 1.24979 0.96507 0.97405 0.94674 1.69930 1.37018 1.28447 1.16095 0.86458 0.81977 0.80643 0.78651 1.19535 1.20695 1.20536 1.21419 0.90702 1.01699 0.85290 1.20958 0.95822 0.96135 0.95630 1.21991 0.98927 0.98953 1.00102 1.21780 0.99983 1.01569 0.95979 1.21837 1.00299 0.95435 1.01427 1.83512 1.55649 1.09029 1.08961 0.91415 0.91278 0.90572 0.77404 0.74630 0.93399 0.92775 0.92155 0.89993 0.90754 0.92547 0.93638 0.91505 0.92778 0.92880 0.92636 0.93277 0.93822 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.52 37.16 0.35 -1.53 16 2 C 0.19 2.35 4.08 -27.88 -0.11 2.24 16 3 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 4 O -0.55 -7.24 13.29 -35.23 -0.47 -7.71 16 5 C 0.03 0.45 6.28 -13.29 -0.08 0.37 16 6 N -0.45 -9.30 10.49 -11.50 -0.12 -9.42 16 7 C 0.09 1.89 9.12 -18.85 -0.17 1.72 16 8 C -0.28 -5.75 6.11 -37.10 -0.23 -5.97 16 9 C 0.59 12.77 5.91 -12.85 -0.08 12.69 16 10 O -0.57 -12.67 14.94 5.20 0.08 -12.59 16 11 N -0.57 -11.98 1.99 -176.60 -0.35 -12.33 16 12 C 0.21 4.76 3.90 -5.19 -0.02 4.74 16 13 C -0.55 -13.74 7.66 -34.44 -0.26 -14.01 16 14 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 16 N -0.88 -23.43 13.29 55.43 0.74 -22.69 16 17 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.13 2.42 4.61 -4.04 -0.02 2.40 16 22 C -0.08 -1.33 0.85 -154.50 -0.13 -1.46 16 23 C -0.14 -2.29 7.48 37.16 0.28 -2.01 16 24 C -0.14 -1.76 8.47 37.16 0.31 -1.45 16 25 C -0.13 -2.17 7.12 37.16 0.26 -1.91 16 26 S 0.17 2.88 23.11 -107.50 -2.48 0.39 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.38 2.77 9.08 45.56 0.41 3.18 16 31 H 0.24 5.82 3.66 -52.49 -0.19 5.63 16 32 H 0.05 1.14 5.76 -51.93 -0.30 0.84 16 33 H 0.05 1.34 4.30 -51.93 -0.22 1.11 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.08 1.50 8.07 -51.93 -0.42 1.08 16 36 H 0.07 1.38 7.37 -51.93 -0.38 0.99 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.22 5.80 -51.93 -0.30 0.92 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.90 6.67 -51.93 -0.35 0.55 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.09 7.21 -51.93 -0.37 0.72 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -30.09 369.83 -7.94 -38.04 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.90 Total: 8.00 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 0.01 Total: -2.50 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.26 Total: -44.45 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.39 Total: -20.30 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.48 Total: 0.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.09 -7.94 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283095327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.904 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds