Wall clock time and date at job start Tue Mar 31 2020 15:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47674 * 2 1 4 4 C 1.50699 * 109.46727 * 120.00373 * 2 1 3 5 5 H 1.08002 * 119.99915 * 114.76559 * 4 2 1 6 6 C 1.37881 * 119.99854 * 294.76043 * 4 2 1 7 7 N 1.31507 * 119.99903 * 359.93845 * 6 4 2 8 8 Si 1.86801 * 119.99719 * 180.20803 * 6 4 2 9 9 H 1.48493 * 109.47434 * 264.73603 * 8 6 4 10 10 H 1.48507 * 109.47247 * 24.73697 * 8 6 4 11 11 H 1.48498 * 109.46923 * 144.73393 * 8 6 4 12 12 N 1.46504 * 109.47163 * 240.00253 * 2 1 3 13 13 C 1.46506 * 119.99800 * 300.00323 * 12 2 1 14 14 S 1.65596 * 120.00282 * 120.00211 * 12 2 1 15 15 O 1.42095 * 106.40562 * 192.16261 * 14 12 2 16 16 O 1.42104 * 106.40197 * 325.08764 * 14 12 2 17 17 N 1.65604 * 107.21658 * 78.62212 * 14 12 2 18 18 C 1.46495 * 120.00031 * 61.65967 * 17 14 12 19 19 C 1.53002 * 109.46831 * 290.90908 * 18 17 14 20 20 C 1.53003 * 109.47115 * 50.90787 * 18 17 14 21 21 C 1.50693 * 109.47372 * 170.90571 * 18 17 14 22 22 C 1.38235 * 119.99744 * 1.88221 * 21 18 17 23 23 C 1.38237 * 119.99779 * 179.76413 * 22 21 18 24 24 C 1.38235 * 120.00264 * 0.50355 * 23 22 21 25 25 C 1.38236 * 119.99599 * 359.74905 * 24 23 22 26 26 C 1.38230 * 120.00115 * 359.97438 * 25 24 23 27 27 H 1.08992 * 109.47120 * 177.27401 * 1 2 3 28 28 H 1.08997 * 109.47179 * 297.28349 * 1 2 3 29 29 H 1.09005 * 109.46525 * 57.27743 * 1 2 3 30 30 H 0.97003 * 119.99810 * 180.27236 * 7 6 4 31 31 H 1.08997 * 109.47216 * 95.13764 * 13 12 2 32 32 H 1.08997 * 109.46744 * 215.13987 * 13 12 2 33 33 H 1.08999 * 109.47174 * 335.13720 * 13 12 2 34 34 H 0.97003 * 119.99811 * 241.65415 * 17 14 12 35 35 H 1.08993 * 109.47427 * 64.76336 * 19 18 17 36 36 H 1.09004 * 109.46839 * 184.76199 * 19 18 17 37 37 H 1.08994 * 109.47341 * 304.76041 * 19 18 17 38 38 H 1.08995 * 109.47428 * 51.97427 * 20 18 17 39 39 H 1.08998 * 109.47025 * 171.97666 * 20 18 17 40 40 H 1.09008 * 109.46805 * 291.97550 * 20 18 17 41 41 H 1.07997 * 120.00616 * 359.97438 * 22 21 18 42 42 H 1.08005 * 120.00261 * 180.22862 * 23 22 21 43 43 H 1.07994 * 120.00445 * 179.72477 * 24 23 22 44 44 H 1.08005 * 119.99444 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00065 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.5816 -1.6353 1.1336 6 6 1.7904 -0.1798 2.4799 7 7 1.1226 0.9469 2.5977 8 14 2.4180 -1.0576 4.0047 9 1 1.3424 -1.9187 4.5582 10 1 3.5890 -1.8974 3.6458 11 1 2.8218 -0.0543 5.0224 12 7 2.0184 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 3.0372 -0.7071 -3.4439 16 8 2.5050 1.4566 -2.3114 17 7 4.5019 0.1621 -1.6579 18 6 5.2271 -1.0844 -1.4000 19 6 4.5667 -1.8274 -0.2369 20 6 5.1923 -1.9631 -2.6521 21 6 6.6579 -0.7693 -1.0473 22 6 7.0777 0.5456 -0.9718 23 6 8.3890 0.8347 -0.6434 24 6 9.2831 -0.1912 -0.4007 25 6 8.8646 -1.5062 -0.4813 26 6 7.5519 -1.7953 -0.8041 27 1 -0.3633 -1.0264 -0.0489 28 1 -0.3633 0.4711 0.9133 29 1 -0.3632 0.5556 -0.8646 30 1 0.9560 1.3223 3.4765 31 1 0.7891 -2.1447 -2.0757 32 1 2.5002 -2.6047 -1.9054 33 1 1.4404 -2.5736 -0.4757 34 1 4.9187 1.0155 -1.4606 35 1 3.5596 -2.1296 -0.5238 36 1 5.1548 -2.7113 0.0102 37 1 4.5155 -1.1707 0.6314 38 1 5.5311 -1.3847 -3.5115 39 1 5.8478 -2.8224 -2.5112 40 1 4.1729 -2.3082 -2.8254 41 1 6.3804 1.3471 -1.1660 42 1 8.7161 1.8621 -0.5808 43 1 10.3086 0.0345 -0.1485 44 1 9.5633 -2.3078 -0.2921 45 1 7.2250 -2.8227 -0.8674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283116024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:01 Heat of formation + Delta-G solvation = -33.883358 kcal Electronic energy + Delta-G solvation = -27964.961367 eV Core-core repulsion = 24302.987211 eV Total energy + Delta-G solvation = -3661.974156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.80695 -37.09598 -36.49079 -35.94421 -35.23116 -32.61786 -31.53918 -30.48859 -29.52107 -28.98388 -26.97702 -25.55015 -25.13231 -23.26249 -22.39205 -20.79365 -20.12134 -18.60987 -17.84999 -16.97838 -16.49244 -16.33582 -15.56335 -15.19657 -14.92438 -14.50697 -14.14627 -13.86367 -13.73728 -13.48701 -13.37423 -13.33557 -12.81786 -12.58872 -12.38261 -12.07201 -11.93619 -11.69209 -11.54427 -11.43101 -11.38305 -11.21729 -11.10332 -10.99592 -10.96996 -10.86753 -10.79833 -10.43533 -10.29088 -10.20541 -10.04674 -9.32122 -9.21687 -8.89841 -8.59447 -8.51166 -7.95120 -6.11646 -4.18218 1.29748 1.38569 1.42110 3.22456 3.31167 3.31496 3.48673 3.80950 4.14487 4.33965 4.63266 4.83279 4.98188 5.06176 5.13505 5.19087 5.21681 5.39976 5.42789 5.54014 5.58221 5.67579 5.88756 5.94559 6.00379 6.04035 6.13789 6.23798 6.34454 6.37264 6.46156 6.52080 6.58334 6.61095 6.75920 6.82241 6.86779 6.93640 7.00969 7.09951 7.29860 7.50765 7.60574 7.75729 7.99169 8.23403 8.84845 9.47562 10.94754 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.006156 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.410241 B = 4547.417721 C = 5985.703744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.272 3.728 3 H 0.054 0.946 4 C -0.526 4.526 5 H 0.072 0.928 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.991 5.991 13 C 0.099 3.901 14 S 2.785 3.215 15 O -0.996 6.996 16 O -0.987 6.987 17 N -1.120 6.120 18 C 0.221 3.779 19 C -0.183 4.183 20 C -0.169 4.169 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.014 0.986 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.409 0.591 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 -5.375 -5.965 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.170 3.830 3 H 0.072 0.928 4 C -0.565 4.565 5 H 0.090 0.910 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.213 1.213 12 N -0.833 5.833 13 C -0.047 4.047 14 S 2.794 3.206 15 O -0.979 6.979 16 O -0.971 6.971 17 N -0.881 5.881 18 C 0.132 3.868 19 C -0.241 4.241 20 C -0.227 4.227 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.130 4.130 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.272 -5.029 -6.722 14.055 hybrid contribution 0.645 -0.098 1.569 1.699 sum 11.917 -5.127 -5.152 13.959 Atomic orbital electron populations 1.22016 0.98245 0.99178 1.00716 1.18650 0.91619 0.92486 0.80280 0.92803 1.21539 1.35638 1.09255 0.90058 0.90952 1.24922 0.95065 0.94893 0.98917 1.69917 1.39867 1.18788 1.23919 0.86610 0.79140 0.79409 0.83008 1.20807 1.19738 1.21321 1.57726 1.64666 1.21131 1.39799 1.21319 0.99048 0.82266 1.02042 1.01727 0.72501 0.73023 0.73375 1.93541 1.86906 1.69699 1.47769 1.93590 1.79502 1.36833 1.87201 1.56271 1.34934 1.13196 1.83743 1.18970 0.88259 0.83888 0.95662 1.22957 1.01960 1.00433 0.98770 1.22615 1.04370 0.99355 0.96408 1.19864 0.94609 0.93592 0.98364 1.20983 0.95967 0.96261 1.00203 1.21117 0.93484 0.99223 0.99537 1.21101 0.99474 0.93006 1.01136 1.21085 0.95847 0.96572 1.00133 1.20926 0.93146 0.98917 1.00031 0.94816 0.89828 0.96644 0.92729 0.93944 0.92552 0.89849 0.75351 0.89311 0.92430 0.89400 0.91591 0.91695 0.89670 0.85880 0.86115 0.86392 0.86202 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.09 37.16 0.34 -2.93 16 2 C 0.27 6.33 2.48 -69.08 -0.17 6.16 16 3 H 0.05 1.41 7.24 -51.93 -0.38 1.04 16 4 C -0.53 -12.56 6.79 -34.44 -0.23 -12.79 16 5 H 0.07 1.63 4.78 -52.49 -0.25 1.38 16 6 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 7 N -0.89 -23.85 11.71 55.43 0.65 -23.20 16 8 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.99 -19.48 1.90 -115.85 -0.22 -19.70 16 13 C 0.10 1.66 7.24 59.85 0.43 2.09 16 14 S 2.78 53.72 5.81 -107.50 -0.62 53.10 16 15 O -1.00 -19.32 13.70 -57.17 -0.78 -20.11 16 16 O -0.99 -22.45 17.11 -57.17 -0.98 -23.43 16 17 N -1.12 -18.51 5.44 -0.40 0.00 -18.51 16 18 C 0.22 3.29 0.97 -132.97 -0.13 3.16 16 19 C -0.18 -2.89 6.72 37.16 0.25 -2.64 16 20 C -0.17 -2.36 7.21 37.16 0.27 -2.09 16 21 C -0.06 -0.87 4.78 -104.63 -0.50 -1.37 16 22 C -0.12 -1.54 9.30 -39.58 -0.37 -1.91 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 26 C -0.11 -1.35 8.57 -39.59 -0.34 -1.69 16 27 H 0.03 0.71 7.58 -51.93 -0.39 0.32 16 28 H 0.08 2.10 6.44 -51.93 -0.33 1.77 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.83 5.11 -51.93 -0.27 0.56 16 33 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 34 H 0.41 6.26 5.83 -34.47 -0.20 6.06 16 35 H 0.09 1.44 2.49 -51.93 -0.13 1.31 16 36 H 0.06 0.78 7.36 -51.93 -0.38 0.40 16 37 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 38 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 39 H 0.06 0.74 7.01 -51.93 -0.36 0.38 16 40 H 0.08 1.27 4.49 -51.92 -0.23 1.03 16 41 H 0.12 1.57 5.56 -52.49 -0.29 1.28 16 42 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.12 1.29 7.04 -52.48 -0.37 0.92 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -29.81 346.93 -9.48 -39.29 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.99 Total: 10.17 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.74 Total: -17.69 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.43 Total: -61.42 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.76 Total: -43.54 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.62 Total: 53.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.81 -9.48 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283116024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.406 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds