Wall clock time and date at job start Tue Mar 31 2020 15:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47674 * 2 1 4 4 C 1.50699 * 109.46727 * 120.00373 * 2 1 3 5 5 H 1.08002 * 119.99915 * 114.76559 * 4 2 1 6 6 C 1.37881 * 119.99854 * 294.76043 * 4 2 1 7 7 N 1.31507 * 119.99903 * 359.93845 * 6 4 2 8 8 Si 1.86801 * 119.99719 * 180.20803 * 6 4 2 9 9 H 1.48493 * 109.47434 * 264.73603 * 8 6 4 10 10 H 1.48507 * 109.47247 * 24.73697 * 8 6 4 11 11 H 1.48498 * 109.46923 * 144.73393 * 8 6 4 12 12 N 1.46504 * 109.47163 * 240.00253 * 2 1 3 13 13 C 1.46506 * 119.99800 * 300.00323 * 12 2 1 14 14 S 1.65596 * 120.00282 * 120.00211 * 12 2 1 15 15 O 1.42095 * 106.40562 * 192.16261 * 14 12 2 16 16 O 1.42104 * 106.40197 * 325.08764 * 14 12 2 17 17 N 1.65604 * 107.21658 * 78.62212 * 14 12 2 18 18 C 1.46495 * 120.00031 * 61.65967 * 17 14 12 19 19 C 1.53002 * 109.46831 * 290.90908 * 18 17 14 20 20 C 1.53003 * 109.47115 * 50.90787 * 18 17 14 21 21 C 1.50693 * 109.47372 * 170.90571 * 18 17 14 22 22 C 1.38235 * 119.99744 * 1.88221 * 21 18 17 23 23 C 1.38237 * 119.99779 * 179.76413 * 22 21 18 24 24 C 1.38235 * 120.00264 * 0.50355 * 23 22 21 25 25 C 1.38236 * 119.99599 * 359.74905 * 24 23 22 26 26 C 1.38230 * 120.00115 * 359.97438 * 25 24 23 27 27 H 1.08992 * 109.47120 * 177.27401 * 1 2 3 28 28 H 1.08997 * 109.47179 * 297.28349 * 1 2 3 29 29 H 1.09005 * 109.46525 * 57.27743 * 1 2 3 30 30 H 0.97003 * 119.99810 * 180.27236 * 7 6 4 31 31 H 1.08997 * 109.47216 * 95.13764 * 13 12 2 32 32 H 1.08997 * 109.46744 * 215.13987 * 13 12 2 33 33 H 1.08999 * 109.47174 * 335.13720 * 13 12 2 34 34 H 0.97003 * 119.99811 * 241.65415 * 17 14 12 35 35 H 1.08993 * 109.47427 * 64.76336 * 19 18 17 36 36 H 1.09004 * 109.46839 * 184.76199 * 19 18 17 37 37 H 1.08994 * 109.47341 * 304.76041 * 19 18 17 38 38 H 1.08995 * 109.47428 * 51.97427 * 20 18 17 39 39 H 1.08998 * 109.47025 * 171.97666 * 20 18 17 40 40 H 1.09008 * 109.46805 * 291.97550 * 20 18 17 41 41 H 1.07997 * 120.00616 * 359.97438 * 22 21 18 42 42 H 1.08005 * 120.00261 * 180.22862 * 23 22 21 43 43 H 1.07994 * 120.00445 * 179.72477 * 24 23 22 44 44 H 1.08005 * 119.99444 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00065 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.5816 -1.6353 1.1336 6 6 1.7904 -0.1798 2.4799 7 7 1.1226 0.9469 2.5977 8 14 2.4180 -1.0576 4.0047 9 1 1.3424 -1.9187 4.5582 10 1 3.5890 -1.8974 3.6458 11 1 2.8218 -0.0543 5.0224 12 7 2.0184 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 3.0372 -0.7071 -3.4439 16 8 2.5050 1.4566 -2.3114 17 7 4.5019 0.1621 -1.6579 18 6 5.2271 -1.0844 -1.4000 19 6 4.5667 -1.8274 -0.2369 20 6 5.1923 -1.9631 -2.6521 21 6 6.6579 -0.7693 -1.0473 22 6 7.0777 0.5456 -0.9718 23 6 8.3890 0.8347 -0.6434 24 6 9.2831 -0.1912 -0.4007 25 6 8.8646 -1.5062 -0.4813 26 6 7.5519 -1.7953 -0.8041 27 1 -0.3633 -1.0264 -0.0489 28 1 -0.3633 0.4711 0.9133 29 1 -0.3632 0.5556 -0.8646 30 1 0.9560 1.3223 3.4765 31 1 0.7891 -2.1447 -2.0757 32 1 2.5002 -2.6047 -1.9054 33 1 1.4404 -2.5736 -0.4757 34 1 4.9187 1.0155 -1.4606 35 1 3.5596 -2.1296 -0.5238 36 1 5.1548 -2.7113 0.0102 37 1 4.5155 -1.1707 0.6314 38 1 5.5311 -1.3847 -3.5115 39 1 5.8478 -2.8224 -2.5112 40 1 4.1729 -2.3082 -2.8254 41 1 6.3804 1.3471 -1.1660 42 1 8.7161 1.8621 -0.5808 43 1 10.3086 0.0345 -0.1485 44 1 9.5633 -2.3078 -0.2921 45 1 7.2250 -2.8227 -0.8674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283116024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:00 Heat of formation + Delta-G solvation = -52.398510 kcal Electronic energy + Delta-G solvation = -27965.764244 eV Core-core repulsion = 24302.987211 eV Total energy + Delta-G solvation = -3662.777033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.80039 -38.48949 -38.12527 -37.31185 -36.86805 -34.45977 -32.62498 -31.45878 -31.05424 -30.29064 -28.21763 -27.12200 -26.91997 -24.27584 -23.30576 -22.58495 -21.24574 -20.01083 -19.19050 -18.58526 -18.26125 -17.55827 -17.01044 -16.65830 -16.02160 -15.90511 -15.37377 -15.14872 -15.05847 -14.89633 -14.63382 -14.50210 -14.32031 -13.80945 -13.72714 -13.47754 -13.32647 -13.19483 -13.10953 -12.96087 -12.86176 -12.77362 -12.62199 -12.48150 -12.36029 -12.26938 -12.16935 -11.99684 -11.80689 -11.78785 -11.38233 -11.02690 -10.59700 -10.46395 -9.78387 -9.62490 -9.52454 -8.05037 -6.15751 -0.24182 0.47885 0.53657 1.45593 1.48943 1.56386 1.99649 2.48651 2.63271 2.91599 3.26141 3.47693 3.59151 3.91724 4.05756 4.13924 4.17780 4.26795 4.32045 4.40159 4.63513 4.67652 4.69659 4.75507 4.84388 4.92354 4.99852 5.03544 5.08063 5.11128 5.18184 5.19794 5.22909 5.28361 5.42855 5.60403 5.62874 5.65163 5.66018 5.71475 5.75040 5.89367 6.05504 6.14860 6.18858 6.33655 6.94379 7.52750 9.01434 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.006156 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.410241 B = 4547.417721 C = 5985.703744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.279 3.721 3 H 0.017 0.983 4 C -0.515 4.515 5 H 0.088 0.912 6 C 0.015 3.985 7 N -0.923 5.923 8 Si 0.947 3.053 9 H -0.280 1.280 10 H -0.260 1.260 11 H -0.296 1.296 12 N -0.993 5.993 13 C 0.091 3.909 14 S 2.797 3.203 15 O -0.995 6.995 16 O -1.027 7.027 17 N -1.116 6.116 18 C 0.220 3.780 19 C -0.182 4.182 20 C -0.168 4.168 21 C -0.082 4.082 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.118 4.118 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 -7.810 -5.965 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.175 3.825 3 H 0.035 0.965 4 C -0.555 4.555 5 H 0.106 0.894 6 C -0.184 4.184 7 N -0.563 5.563 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.184 1.184 11 H -0.223 1.223 12 N -0.835 5.835 13 C -0.054 4.054 14 S 2.807 3.193 15 O -0.979 6.979 16 O -1.011 7.011 17 N -0.880 5.880 18 C 0.132 3.868 19 C -0.240 4.240 20 C -0.226 4.226 21 C -0.083 4.083 22 C -0.159 4.159 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.136 4.136 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.519 -7.493 -6.743 16.864 hybrid contribution 0.037 0.652 1.512 1.647 sum 13.557 -6.841 -5.232 16.061 Atomic orbital electron populations 1.21914 0.98216 0.99918 0.99540 1.18317 0.91599 0.91027 0.81596 0.96535 1.21825 1.34387 1.09260 0.89990 0.89437 1.25633 0.95571 0.95500 1.01668 1.70061 1.41690 1.20445 1.24128 0.85702 0.78954 0.78231 0.79709 1.20608 1.18351 1.22307 1.57576 1.65159 1.22286 1.38490 1.21555 1.00562 0.80604 1.02647 1.01197 0.72804 0.71981 0.73363 1.93540 1.87131 1.69390 1.47827 1.93533 1.80653 1.39174 1.87784 1.56100 1.33935 1.14466 1.83502 1.19092 0.88930 0.82930 0.95860 1.22899 1.02335 1.00866 0.97866 1.22604 1.04433 1.00055 0.95500 1.19851 0.94105 0.94322 1.00029 1.21113 0.96934 0.96266 1.01542 1.21378 0.93002 1.00614 0.99241 1.21481 1.00535 0.92827 0.99904 1.21465 0.95817 0.97470 0.98872 1.21176 0.93463 0.99273 0.99733 0.93125 0.92234 0.96465 0.93149 0.92879 0.90226 0.89679 0.74866 0.89881 0.89882 0.92347 0.92347 0.88782 0.90596 0.86601 0.84578 0.83777 0.83374 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 9.09 71.98 0.65 -5.70 16 2 C 0.28 13.17 2.48 44.24 0.11 13.28 16 3 H 0.02 0.92 7.24 -2.39 -0.02 0.90 16 4 C -0.52 -24.57 6.79 25.60 0.17 -24.40 16 5 H 0.09 3.84 4.78 -2.91 -0.01 3.82 16 6 C 0.02 0.78 5.31 84.66 0.45 1.23 16 7 N -0.92 -50.97 11.71 21.45 0.25 -50.72 16 8 Si 0.95 40.62 29.54 68.60 2.03 42.64 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 12 N -0.99 -38.85 1.90 -520.44 -0.99 -39.84 16 13 C 0.09 2.90 7.24 127.77 0.92 3.83 16 14 S 2.80 108.68 5.81 -56.49 -0.33 108.35 16 15 O -1.00 -37.92 13.70 -128.00 -1.75 -39.67 16 16 O -1.03 -48.26 17.11 -128.00 -2.19 -50.45 16 17 N -1.12 -37.10 5.44 -155.19 -0.85 -37.95 16 18 C 0.22 6.28 0.97 2.86 0.00 6.28 16 19 C -0.18 -5.43 6.72 71.98 0.48 -4.95 16 20 C -0.17 -4.33 7.21 71.98 0.52 -3.81 16 21 C -0.08 -2.13 4.78 -19.87 -0.09 -2.22 16 22 C -0.14 -3.66 9.30 22.27 0.21 -3.45 16 23 C -0.12 -2.71 10.05 22.27 0.22 -2.48 16 24 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 25 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 26 C -0.12 -2.51 8.57 22.27 0.19 -2.32 16 27 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 28 H 0.06 3.07 6.44 -2.39 -0.02 3.06 16 29 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.16 5.11 -2.39 -0.01 2.15 16 33 H 0.08 2.68 7.00 -2.39 -0.02 2.67 16 34 H 0.41 13.08 5.83 -96.74 -0.56 12.52 16 35 H 0.08 2.54 2.49 -2.39 -0.01 2.53 16 36 H 0.08 2.01 7.36 -2.38 -0.02 1.99 16 37 H 0.06 2.10 6.95 -2.39 -0.02 2.08 16 38 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 39 H 0.09 1.84 7.01 -2.39 -0.02 1.83 16 40 H 0.08 2.09 4.49 -2.38 -0.01 2.08 16 41 H 0.12 3.05 5.56 -2.91 -0.02 3.03 16 42 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.14 2.40 7.04 -2.91 -0.02 2.38 16 Total: -1.00 -64.59 346.93 0.92 -63.67 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.46 Total: 32.78 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.29 Total: -28.82 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -1.58 Total: -128.50 kcal Atomic # 8 Polarization: -86.18 SS G_CDS: -3.94 Total: -90.13 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 108.68 SS G_CDS: -0.33 Total: 108.35 kcal Total: -64.59 0.92 -63.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283116024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.271 kcal (2) G-P(sol) polarization free energy of solvation -64.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds