Wall clock time and date at job start Tue Mar 31 2020 14:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 110.00616 * 2 1 4 4 C 1.50755 * 109.78656 * 121.09082 * 2 1 3 5 5 C 1.34212 * 127.61595 * 289.09191 * 4 2 1 6 6 C 1.41054 * 107.28919 * 179.65386 * 5 4 2 7 7 C 1.34970 * 107.46112 * 0.09469 * 6 5 4 8 8 N 1.36090 * 108.26665 * 0.12324 * 7 6 5 9 9 C 1.46709 * 126.92582 * 179.56449 * 8 7 6 10 10 C 1.53220 * 109.23151 * 161.26865 * 9 8 7 11 11 N 1.47060 * 109.29046 * 46.32347 * 10 9 8 12 12 S 1.65596 * 120.98216 * 115.88245 * 11 10 9 13 13 O 1.42103 * 104.27821 * 333.92939 * 12 11 10 14 14 O 1.42096 * 104.27823 * 206.06988 * 12 11 10 15 15 C 1.81408 * 104.44829 * 89.99797 * 12 11 10 16 16 C 1.53005 * 109.46741 * 179.97438 * 15 12 11 17 17 C 1.52996 * 109.47395 * 60.00291 * 16 15 12 18 18 C 1.53000 * 109.46880 * 299.99867 * 16 15 12 19 19 C 1.50700 * 109.46760 * 179.97438 * 16 15 12 20 20 H 1.08001 * 120.00213 * 354.23559 * 19 16 15 21 21 C 1.37874 * 119.99979 * 174.22788 * 19 16 15 22 22 N 1.31509 * 120.00405 * 209.34938 * 21 19 16 23 23 Si 1.86807 * 119.99839 * 29.35704 * 21 19 16 24 24 H 1.48501 * 109.47006 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47333 * 59.99401 * 23 21 19 26 26 H 1.48502 * 109.46820 * 299.99399 * 23 21 19 27 27 H 1.08993 * 109.46746 * 181.23520 * 1 2 3 28 28 H 1.08998 * 109.47173 * 301.23992 * 1 2 3 29 29 H 1.09006 * 109.46727 * 61.23469 * 1 2 3 30 30 H 1.08008 * 126.35720 * 359.66530 * 5 4 2 31 31 H 1.07993 * 126.27136 * 180.11289 * 6 5 4 32 32 H 1.08001 * 125.86528 * 180.10531 * 7 6 5 33 33 H 1.09002 * 109.51541 * 41.33598 * 9 8 7 34 34 H 1.09004 * 109.54745 * 281.21745 * 9 8 7 35 35 H 1.08996 * 109.50424 * 286.37769 * 10 9 8 36 36 H 1.09007 * 109.50128 * 166.26660 * 10 9 8 37 37 H 1.08994 * 109.46918 * 60.00318 * 15 12 11 38 38 H 1.08998 * 109.46934 * 299.99981 * 15 12 11 39 39 H 1.08997 * 109.47546 * 174.73396 * 17 16 15 40 40 H 1.09001 * 109.46821 * 294.73488 * 17 16 15 41 41 H 1.08996 * 109.47252 * 54.72522 * 17 16 15 42 42 H 1.09001 * 109.47303 * 306.02605 * 18 16 15 43 43 H 1.08998 * 109.47353 * 66.03067 * 18 16 15 44 44 H 1.09008 * 109.46594 * 186.02707 * 18 16 15 45 45 H 0.96998 * 120.00201 * 354.99909 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9030 1.0243 0.0000 4 6 2.0404 -0.7325 1.2148 5 6 1.9905 -0.3310 2.4945 6 6 2.5818 -1.3459 3.2756 7 6 2.9716 -2.3280 2.4358 8 7 2.6468 -1.9583 1.1670 9 6 2.8934 -2.7187 -0.0631 10 6 1.9828 -2.1884 -1.1754 11 7 2.0333 -0.7187 -1.1853 12 16 2.6436 0.1045 -2.4861 13 8 3.5488 -0.8113 -3.0872 14 8 3.1004 1.3341 -1.9397 15 6 1.2087 0.3797 -3.5614 16 6 1.6483 1.1418 -4.8132 17 6 2.6998 0.3237 -5.5654 18 6 2.2463 2.4898 -4.4058 19 6 0.4564 1.3698 -5.7067 20 1 -0.4974 0.9283 -5.4580 21 6 0.5834 2.1423 -6.8416 22 7 -0.4492 2.8179 -7.2963 23 14 2.2224 2.2291 -7.7338 24 1 2.0963 3.1198 -8.9153 25 1 2.6158 0.8684 -8.1799 26 1 3.2578 2.7676 -6.8156 27 1 -0.3632 -1.0274 0.0222 28 1 -0.3633 0.5330 0.8786 29 1 -0.3633 0.4946 -0.9009 30 1 1.5746 0.5968 2.8587 31 1 2.7006 -1.3385 4.3489 32 1 3.4581 -3.2489 2.7217 33 1 2.6789 -3.7731 0.1114 34 1 3.9359 -2.6037 -0.3602 35 1 0.9591 -2.5161 -0.9948 36 1 2.3234 -2.5707 -2.1378 37 1 0.4598 0.9629 -3.0256 38 1 0.7824 -0.5807 -3.8511 39 1 2.9444 0.8214 -6.5038 40 1 3.5985 0.2378 -4.9546 41 1 2.3057 -0.6710 -5.7736 42 1 1.5353 3.0283 -3.7791 43 1 3.1689 2.3248 -3.8493 44 1 2.4608 3.0769 -5.2989 45 1 -1.3179 2.7166 -6.8767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295359034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:05 Heat of formation + Delta-G solvation = -1.377789 kcal Electronic energy + Delta-G solvation = -27539.849755 eV Core-core repulsion = 23879.285146 eV Total energy + Delta-G solvation = -3660.564609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58180 -37.15215 -36.91527 -36.68455 -35.55949 -33.85138 -32.05497 -30.74252 -28.53439 -27.89519 -27.36813 -26.39842 -24.57523 -23.84104 -22.79973 -20.74533 -19.72158 -19.16497 -17.99006 -17.87904 -17.26922 -16.93664 -16.14530 -15.78982 -15.46577 -14.81087 -14.64753 -14.17394 -13.93094 -13.59880 -13.52597 -13.35347 -13.25156 -12.86634 -12.56981 -12.48150 -12.33054 -12.26186 -12.11515 -12.07143 -11.89963 -11.78530 -11.58519 -11.38051 -11.22397 -11.11044 -10.98528 -10.60109 -10.24387 -9.99301 -9.97589 -9.34124 -9.10030 -8.98383 -8.65154 -8.12618 -8.08577 -6.63935 -4.18556 0.51685 2.16462 2.56560 2.95132 2.98815 3.30794 3.35664 3.57029 4.08914 4.24986 4.29942 4.37001 4.39929 4.73808 4.81412 4.94741 5.01705 5.05341 5.08400 5.14498 5.28949 5.37234 5.42679 5.48690 5.52049 5.57562 5.63549 5.85090 5.95291 6.04217 6.16329 6.19299 6.24895 6.26537 6.37980 6.41839 6.47264 6.68682 6.83579 6.97292 7.12457 7.14236 7.29011 7.30763 7.97019 8.23489 8.76158 9.45210 10.75017 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.003805 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.961057 B = 7357.537312 C = 7664.208115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.212 3.788 3 H 0.121 0.879 4 C 0.019 3.981 5 C -0.190 4.190 6 C -0.202 4.202 7 C -0.014 4.014 8 N -0.441 5.441 9 C 0.090 3.910 10 C 0.109 3.891 11 N -1.009 6.009 12 S 2.586 3.414 13 O -0.961 6.961 14 O -0.955 6.955 15 C -0.568 4.568 16 C 0.061 3.939 17 C -0.180 4.180 18 C -0.172 4.172 19 C -0.604 4.604 20 H 0.061 0.939 21 C 0.042 3.958 22 N -0.884 5.884 23 Si 1.045 2.955 24 H -0.295 1.295 25 H -0.282 1.282 26 H -0.273 1.273 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -10.914 16.821 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.105 3.895 3 H 0.139 0.861 4 C -0.094 4.094 5 C -0.214 4.214 6 C -0.227 4.227 7 C -0.144 4.144 8 N -0.118 5.118 9 C -0.033 4.033 10 C -0.017 4.017 11 N -0.844 5.844 12 S 2.686 3.314 13 O -0.951 6.951 14 O -0.945 6.945 15 C -0.702 4.702 16 C 0.058 3.942 17 C -0.236 4.236 18 C -0.229 4.229 19 C -0.642 4.642 20 H 0.079 0.921 21 C -0.166 4.166 22 N -0.515 5.515 23 Si 0.877 3.123 24 H -0.222 1.222 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.205 -10.166 15.145 18.969 hybrid contribution -1.474 -1.076 1.234 2.203 sum 3.731 -11.243 16.379 20.214 Atomic orbital electron populations 1.22196 0.93611 1.02920 1.03210 1.19727 0.94156 0.95903 0.79666 0.86147 1.20293 1.04819 0.88413 0.95844 1.20444 1.08356 1.01240 0.91406 1.20876 1.07436 0.95591 0.98835 1.21711 1.08193 1.01815 0.82701 1.44022 1.45878 1.15730 1.06140 1.22291 1.01645 0.95973 0.83361 1.21591 1.00236 0.80140 0.99739 1.58317 1.80265 1.14061 1.31774 1.05985 0.77757 0.73793 0.73862 1.93537 1.60800 1.63970 1.76793 1.93551 1.79508 1.44541 1.76932 1.30439 1.17475 1.09993 1.12267 1.18189 0.95976 0.90320 0.89743 1.22778 0.98375 1.01182 1.01311 1.22643 0.99016 0.99417 1.01838 1.21540 0.94644 1.38217 1.09830 0.92102 1.25713 1.04394 0.91039 0.95445 1.70887 1.02418 1.31589 1.46653 0.84232 0.75687 0.75980 0.76371 1.22238 1.21007 1.19973 0.92030 0.90599 0.91318 0.84535 0.84749 0.82333 0.88530 0.89569 0.90075 0.86975 0.85768 0.86036 0.92817 0.93873 0.92084 0.92458 0.94423 0.91380 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.42 37.16 0.35 -1.34 16 2 C 0.21 2.70 3.30 -68.52 -0.23 2.48 16 3 H 0.12 1.64 6.90 -51.93 -0.36 1.28 16 4 C 0.02 0.25 5.93 -81.75 -0.49 -0.24 16 5 C -0.19 -2.30 10.80 -39.93 -0.43 -2.73 16 6 C -0.20 -2.25 10.87 -39.68 -0.43 -2.68 16 7 C -0.01 -0.15 11.49 -16.82 -0.19 -0.35 16 8 N -0.44 -5.20 3.15 -112.31 -0.35 -5.55 16 9 C 0.09 0.88 7.12 -3.81 -0.03 0.86 16 10 C 0.11 1.15 6.20 -3.62 -0.02 1.13 16 11 N -1.01 -13.55 2.88 -107.26 -0.31 -13.86 16 12 S 2.59 44.54 4.48 -107.50 -0.48 44.06 16 13 O -0.96 -18.01 14.46 -57.54 -0.83 -18.84 16 14 O -0.95 -18.79 14.37 -57.54 -0.83 -19.61 16 15 C -0.57 -10.34 5.12 37.16 0.19 -10.15 16 16 C 0.06 1.39 0.52 -155.66 -0.08 1.31 16 17 C -0.18 -3.96 7.31 37.16 0.27 -3.69 16 18 C -0.17 -3.90 7.44 37.16 0.28 -3.62 16 19 C -0.60 -15.99 8.42 -34.44 -0.29 -16.28 16 20 H 0.06 1.69 7.99 -52.49 -0.42 1.27 16 21 C 0.04 1.17 5.06 -17.82 -0.09 1.08 16 22 N -0.88 -25.95 13.70 55.43 0.76 -25.19 16 23 Si 1.04 25.11 23.54 -169.99 -4.00 21.11 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.39 6.68 56.52 0.38 -6.01 16 26 H -0.27 -6.11 5.75 56.52 0.32 -5.78 16 27 H 0.06 0.61 7.53 -51.93 -0.39 0.22 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.70 7.52 -51.93 -0.39 0.31 16 36 H 0.11 1.11 7.07 -51.93 -0.37 0.74 16 37 H 0.12 2.10 7.86 -51.93 -0.41 1.69 16 38 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.05 1.21 2.24 -51.93 -0.12 1.10 16 40 H 0.04 0.89 5.86 -51.93 -0.30 0.59 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.04 0.80 5.91 -51.93 -0.31 0.49 16 44 H 0.07 1.59 4.41 -51.92 -0.23 1.37 16 45 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -33.05 348.02 -8.75 -41.80 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.76 Total: 5.07 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: -1.19 Total: -34.23 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.10 Total: -44.60 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.66 Total: -38.45 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.00 Total: 21.11 kcal Atomic # 16 Polarization: 44.54 SS G_CDS: -0.48 Total: 44.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.05 -8.75 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295359034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.420 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds