Wall clock time and date at job start Tue Mar 31 2020 14:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 110.00616 * 2 1 4 4 C 1.50755 * 109.78656 * 121.09082 * 2 1 3 5 5 C 1.34212 * 127.61595 * 289.09191 * 4 2 1 6 6 C 1.41054 * 107.28919 * 179.65386 * 5 4 2 7 7 C 1.34970 * 107.46112 * 0.09469 * 6 5 4 8 8 N 1.36090 * 108.26665 * 0.12324 * 7 6 5 9 9 C 1.46709 * 126.92582 * 179.56449 * 8 7 6 10 10 C 1.53220 * 109.23151 * 161.26865 * 9 8 7 11 11 N 1.47060 * 109.29046 * 46.32347 * 10 9 8 12 12 S 1.65596 * 120.98216 * 115.88245 * 11 10 9 13 13 O 1.42103 * 104.27821 * 333.92939 * 12 11 10 14 14 O 1.42096 * 104.27823 * 206.06988 * 12 11 10 15 15 C 1.81408 * 104.44829 * 89.99797 * 12 11 10 16 16 C 1.53005 * 109.46741 * 179.97438 * 15 12 11 17 17 C 1.52996 * 109.47395 * 60.00291 * 16 15 12 18 18 C 1.53000 * 109.46880 * 299.99867 * 16 15 12 19 19 C 1.50700 * 109.46760 * 179.97438 * 16 15 12 20 20 H 1.08001 * 120.00213 * 354.23559 * 19 16 15 21 21 C 1.37874 * 119.99979 * 174.22788 * 19 16 15 22 22 N 1.31509 * 120.00405 * 209.34938 * 21 19 16 23 23 Si 1.86807 * 119.99839 * 29.35704 * 21 19 16 24 24 H 1.48501 * 109.47006 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47333 * 59.99401 * 23 21 19 26 26 H 1.48502 * 109.46820 * 299.99399 * 23 21 19 27 27 H 1.08993 * 109.46746 * 181.23520 * 1 2 3 28 28 H 1.08998 * 109.47173 * 301.23992 * 1 2 3 29 29 H 1.09006 * 109.46727 * 61.23469 * 1 2 3 30 30 H 1.08008 * 126.35720 * 359.66530 * 5 4 2 31 31 H 1.07993 * 126.27136 * 180.11289 * 6 5 4 32 32 H 1.08001 * 125.86528 * 180.10531 * 7 6 5 33 33 H 1.09002 * 109.51541 * 41.33598 * 9 8 7 34 34 H 1.09004 * 109.54745 * 281.21745 * 9 8 7 35 35 H 1.08996 * 109.50424 * 286.37769 * 10 9 8 36 36 H 1.09007 * 109.50128 * 166.26660 * 10 9 8 37 37 H 1.08994 * 109.46918 * 60.00318 * 15 12 11 38 38 H 1.08998 * 109.46934 * 299.99981 * 15 12 11 39 39 H 1.08997 * 109.47546 * 174.73396 * 17 16 15 40 40 H 1.09001 * 109.46821 * 294.73488 * 17 16 15 41 41 H 1.08996 * 109.47252 * 54.72522 * 17 16 15 42 42 H 1.09001 * 109.47303 * 306.02605 * 18 16 15 43 43 H 1.08998 * 109.47353 * 66.03067 * 18 16 15 44 44 H 1.09008 * 109.46594 * 186.02707 * 18 16 15 45 45 H 0.96998 * 120.00201 * 354.99909 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9030 1.0243 0.0000 4 6 2.0404 -0.7325 1.2148 5 6 1.9905 -0.3310 2.4945 6 6 2.5818 -1.3459 3.2756 7 6 2.9716 -2.3280 2.4358 8 7 2.6468 -1.9583 1.1670 9 6 2.8934 -2.7187 -0.0631 10 6 1.9828 -2.1884 -1.1754 11 7 2.0333 -0.7187 -1.1853 12 16 2.6436 0.1045 -2.4861 13 8 3.5488 -0.8113 -3.0872 14 8 3.1004 1.3341 -1.9397 15 6 1.2087 0.3797 -3.5614 16 6 1.6483 1.1418 -4.8132 17 6 2.6998 0.3237 -5.5654 18 6 2.2463 2.4898 -4.4058 19 6 0.4564 1.3698 -5.7067 20 1 -0.4974 0.9283 -5.4580 21 6 0.5834 2.1423 -6.8416 22 7 -0.4492 2.8179 -7.2963 23 14 2.2224 2.2291 -7.7338 24 1 2.0963 3.1198 -8.9153 25 1 2.6158 0.8684 -8.1799 26 1 3.2578 2.7676 -6.8156 27 1 -0.3632 -1.0274 0.0222 28 1 -0.3633 0.5330 0.8786 29 1 -0.3633 0.4946 -0.9009 30 1 1.5746 0.5968 2.8587 31 1 2.7006 -1.3385 4.3489 32 1 3.4581 -3.2489 2.7217 33 1 2.6789 -3.7731 0.1114 34 1 3.9359 -2.6037 -0.3602 35 1 0.9591 -2.5161 -0.9948 36 1 2.3234 -2.5707 -2.1378 37 1 0.4598 0.9629 -3.0256 38 1 0.7824 -0.5807 -3.8511 39 1 2.9444 0.8214 -6.5038 40 1 3.5985 0.2378 -4.9546 41 1 2.3057 -0.6710 -5.7736 42 1 1.5353 3.0283 -3.7791 43 1 3.1689 2.3248 -3.8493 44 1 2.4608 3.0769 -5.2989 45 1 -1.3179 2.7166 -6.8767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295359034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:04 Heat of formation + Delta-G solvation = -23.288426 kcal Electronic energy + Delta-G solvation = -27540.799871 eV Core-core repulsion = 23879.285146 eV Total energy + Delta-G solvation = -3661.514725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41110 -38.48987 -38.34720 -38.05819 -37.02405 -34.68569 -34.12496 -31.65307 -29.45563 -28.87285 -28.70990 -28.17145 -26.62532 -24.67640 -23.74390 -21.63917 -21.42738 -20.32974 -19.22818 -18.99500 -18.76884 -18.22740 -17.22695 -17.13239 -16.66384 -16.51734 -15.65270 -15.14761 -15.13063 -14.99118 -14.82661 -14.68707 -14.43377 -14.24180 -14.16811 -13.98421 -13.47300 -13.38765 -13.23819 -13.16517 -13.05317 -12.91226 -12.91002 -12.77223 -12.65593 -12.34830 -12.30760 -12.06317 -12.00489 -11.79187 -11.67448 -11.05274 -10.83339 -10.35586 -10.18626 -9.48077 -8.93136 -8.79541 -6.34374 -0.84363 1.31949 1.40554 1.43815 1.46644 1.66986 2.09670 2.12807 2.40379 2.72098 2.95132 3.03268 3.35278 3.57994 3.71002 3.88042 3.94043 4.04491 4.17509 4.21501 4.23825 4.30717 4.35556 4.49401 4.54110 4.59218 4.67486 4.68133 4.72401 4.72977 4.75739 4.81637 4.92537 4.98032 5.09954 5.21570 5.31462 5.37701 5.41709 5.49826 5.52041 5.98476 6.05274 6.13322 6.28533 6.51805 6.58419 7.35617 8.58089 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.003805 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.961057 B = 7357.537312 C = 7664.208115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.209 3.791 3 H 0.104 0.896 4 C -0.005 4.005 5 C -0.202 4.202 6 C -0.219 4.219 7 C -0.011 4.011 8 N -0.448 5.448 9 C 0.087 3.913 10 C 0.098 3.902 11 N -1.003 6.003 12 S 2.610 3.390 13 O -0.974 6.974 14 O -0.982 6.982 15 C -0.576 4.576 16 C 0.049 3.951 17 C -0.185 4.185 18 C -0.175 4.175 19 C -0.599 4.599 20 H 0.036 0.964 21 C -0.003 4.003 22 N -0.920 5.920 23 Si 1.066 2.934 24 H -0.302 1.302 25 H -0.259 1.259 26 H -0.249 1.249 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.190 0.810 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -13.108 18.389 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.103 3.897 3 H 0.122 0.878 4 C -0.118 4.118 5 C -0.227 4.227 6 C -0.244 4.244 7 C -0.141 4.141 8 N -0.125 5.125 9 C -0.036 4.036 10 C -0.027 4.027 11 N -0.841 5.841 12 S 2.709 3.291 13 O -0.964 6.964 14 O -0.973 6.973 15 C -0.708 4.708 16 C 0.047 3.953 17 C -0.242 4.242 18 C -0.232 4.232 19 C -0.637 4.637 20 H 0.054 0.946 21 C -0.205 4.205 22 N -0.554 5.554 23 Si 0.893 3.107 24 H -0.230 1.230 25 H -0.185 1.185 26 H -0.175 1.175 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.207 0.793 33 H 0.152 0.848 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.352 -12.374 16.708 21.740 hybrid contribution -1.878 -0.467 0.897 2.133 sum 4.474 -12.841 17.605 22.245 Atomic orbital electron populations 1.22184 0.92062 1.03672 1.03646 1.19789 0.95359 0.95122 0.79427 0.87784 1.20340 1.06255 0.89357 0.95820 1.20728 1.08444 1.01895 0.91649 1.21192 1.07713 0.95602 0.99889 1.22258 1.07131 1.02596 0.82144 1.44236 1.45669 1.15531 1.07049 1.22474 1.01017 0.97720 0.82373 1.21956 1.02053 0.78034 1.00687 1.57979 1.80118 1.15449 1.30521 1.04982 0.76986 0.73206 0.73922 1.93511 1.61161 1.64124 1.77652 1.93514 1.79965 1.46381 1.77407 1.30430 1.18835 1.10481 1.11080 1.18162 0.94792 0.91244 0.91142 1.22793 0.98678 1.01545 1.01146 1.22648 0.99698 0.99384 1.01502 1.21729 0.95135 1.36800 1.10018 0.94550 1.26792 1.06278 0.90994 0.96417 1.70999 1.02574 1.33989 1.47806 0.84001 0.73581 0.77273 0.75825 1.23024 1.18508 1.17490 0.91109 0.89382 0.91650 0.83900 0.83150 0.79331 0.84810 0.90264 0.87797 0.86256 0.85050 0.84253 0.93346 0.92535 0.90896 0.92576 0.93112 0.92446 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.42 71.98 0.68 -2.37 16 2 C 0.21 5.07 3.30 44.08 0.15 5.21 16 3 H 0.10 2.82 6.90 -2.38 -0.02 2.81 16 4 C 0.00 -0.12 5.93 40.88 0.24 0.13 16 5 C -0.20 -4.61 10.80 22.04 0.24 -4.37 16 6 C -0.22 -4.40 10.87 22.21 0.24 -4.16 16 7 C -0.01 -0.21 11.49 83.28 0.96 0.75 16 8 N -0.45 -9.34 3.15 -509.24 -1.60 -10.95 16 9 C 0.09 1.41 7.12 86.41 0.62 2.03 16 10 C 0.10 1.77 6.20 86.35 0.54 2.31 16 11 N -1.00 -25.04 2.88 -493.27 -1.42 -26.47 16 12 S 2.61 85.80 4.48 -56.49 -0.25 85.54 16 13 O -0.97 -34.44 14.46 -127.65 -1.85 -36.28 16 14 O -0.98 -37.82 14.37 -127.65 -1.83 -39.65 16 15 C -0.58 -20.24 5.12 71.98 0.37 -19.87 16 16 C 0.05 2.20 0.52 -52.93 -0.03 2.17 16 17 C -0.18 -7.77 7.31 71.98 0.53 -7.25 16 18 C -0.17 -7.82 7.44 71.98 0.54 -7.29 16 19 C -0.60 -31.84 8.42 25.60 0.22 -31.63 16 20 H 0.04 2.06 7.99 -2.91 -0.02 2.04 16 21 C 0.00 -0.16 5.06 84.65 0.43 0.27 16 22 N -0.92 -55.40 13.70 21.45 0.29 -55.10 16 23 Si 1.07 49.84 23.54 68.60 1.61 51.46 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.26 -11.03 6.68 99.48 0.66 -10.37 16 26 H -0.25 -10.65 5.75 99.48 0.57 -10.08 16 27 H 0.07 1.24 7.53 -2.39 -0.02 1.22 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.30 7.86 -2.38 -0.02 1.28 16 30 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.10 1.43 7.52 -2.39 -0.02 1.41 16 36 H 0.12 2.00 7.07 -2.38 -0.02 1.99 16 37 H 0.13 4.35 7.86 -2.39 -0.02 4.33 16 38 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 39 H 0.05 2.08 2.24 -2.39 -0.01 2.07 16 40 H 0.06 2.21 5.86 -2.39 -0.01 2.20 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 2.11 5.91 -2.39 -0.01 2.09 16 44 H 0.06 2.64 4.41 -2.38 -0.01 2.63 16 45 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16 Total: -1.00 -71.36 348.02 1.42 -69.94 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.77 Total: 25.59 kcal Atomic # 6 Polarization: -69.78 SS G_CDS: 5.70 Total: -64.08 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -2.73 Total: -92.52 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -3.68 Total: -75.93 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.61 Total: 51.46 kcal Atomic # 16 Polarization: 85.80 SS G_CDS: -0.25 Total: 85.54 kcal Total: -71.36 1.42 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295359034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.649 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds