Wall clock time and date at job start Tue Mar 31 2020 14:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 C 1.50707 * 109.46706 * 240.00564 * 2 1 3 5 5 C 1.38227 * 119.62059 * 85.02235 * 4 2 1 6 6 C 1.38627 * 119.15702 * 179.74122 * 5 4 2 7 7 C 1.38669 * 118.42389 * 0.47826 * 6 5 4 8 8 C 1.38186 * 119.16143 * 359.49762 * 7 6 5 9 9 N 1.31856 * 119.61137 * 264.99664 * 4 2 1 10 10 N 1.46491 * 109.47172 * 120.00509 * 2 1 3 11 11 C 1.46498 * 120.00511 * 59.99914 * 10 2 1 12 12 S 1.65602 * 119.99803 * 240.00032 * 10 2 1 13 13 O 1.42102 * 104.27710 * 206.06860 * 12 10 2 14 14 O 1.42104 * 104.27757 * 333.92445 * 12 10 2 15 15 C 1.81399 * 104.45216 * 89.99989 * 12 10 2 16 16 C 1.52995 * 109.47138 * 180.02562 * 15 12 10 17 17 C 1.53007 * 109.47163 * 299.99608 * 16 15 12 18 18 C 1.53002 * 109.47812 * 59.99698 * 16 15 12 19 19 C 1.50700 * 109.46996 * 179.97438 * 16 15 12 20 20 H 1.08001 * 120.00109 * 359.97438 * 19 16 15 21 21 C 1.37886 * 119.99961 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99926 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99864 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.47213 * 60.00428 * 23 21 19 25 25 H 1.48504 * 109.47006 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47127 * 300.00024 * 23 21 19 27 27 H 1.08998 * 109.47300 * 59.99569 * 1 2 3 28 28 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47074 * 299.99783 * 1 2 3 30 30 H 1.07997 * 120.41915 * 359.97438 * 5 4 2 31 31 H 1.08008 * 120.78688 * 180.22921 * 6 5 4 32 32 H 1.08002 * 120.42244 * 179.78279 * 7 6 5 33 33 H 1.07996 * 119.61757 * 180.25243 * 8 7 6 34 34 H 1.08994 * 109.47266 * 89.99829 * 11 10 2 35 35 H 1.09002 * 109.46999 * 210.00391 * 11 10 2 36 36 H 1.09002 * 109.46623 * 329.99645 * 11 10 2 37 37 H 1.08999 * 109.46648 * 300.00008 * 15 12 10 38 38 H 1.08994 * 109.47066 * 59.99722 * 15 12 10 39 39 H 1.08994 * 109.46918 * 59.99720 * 17 16 15 40 40 H 1.08996 * 109.47544 * 180.02562 * 17 16 15 41 41 H 1.09007 * 109.46826 * 300.00716 * 17 16 15 42 42 H 1.08999 * 109.47050 * 59.99687 * 18 16 15 43 43 H 1.08996 * 109.47364 * 180.02562 * 18 16 15 44 44 H 1.09007 * 109.46741 * 300.00198 * 18 16 15 45 45 H 0.97001 * 119.99859 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.1617 -0.0129 -2.4170 6 6 2.6297 -0.6745 -3.5418 7 6 2.9420 -2.0212 -3.4332 8 6 2.7874 -2.6521 -2.2135 9 7 2.3437 -1.9898 -1.1629 10 7 2.0184 -0.6907 1.1960 11 6 1.6645 -2.0932 1.4279 12 16 2.9704 0.1141 2.2861 13 8 3.7316 -0.9108 2.9103 14 8 3.6006 1.1301 1.5181 15 6 1.7965 0.8411 3.4625 16 6 2.5633 1.6209 4.5323 17 6 3.5085 0.6738 5.2745 18 6 3.3754 2.7346 3.8681 19 6 1.5880 2.2254 5.5092 20 1 0.5272 2.0693 5.3797 21 6 2.0499 2.9777 6.5684 22 7 3.3416 3.1681 6.7258 23 14 0.8408 3.7276 7.7789 24 1 0.0514 2.6475 8.4234 25 1 1.5852 4.4844 8.8174 26 1 -0.0752 4.6475 7.0580 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9050 1.0349 -2.4661 31 1 2.7445 -0.1543 -4.4813 32 1 3.3059 -2.5690 -4.2899 33 1 3.0323 -3.6997 -2.1197 34 1 2.4158 -2.7377 0.9715 35 1 1.6239 -2.2852 2.5001 36 1 0.6904 -2.3002 0.9846 37 1 1.1234 1.5161 2.9338 38 1 1.2177 0.0478 3.9354 39 1 4.2138 0.2369 4.5677 40 1 4.0545 1.2292 6.0370 41 1 2.9300 -0.1196 5.7478 42 1 2.7021 3.4093 3.3393 43 1 3.9220 3.2898 4.6302 44 1 4.0809 2.2977 3.1612 45 1 3.6665 3.6977 7.4708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295541378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:06 Heat of formation + Delta-G solvation = -27.235183 kcal Electronic energy + Delta-G solvation = -27063.702845 eV Core-core repulsion = 23402.016976 eV Total energy + Delta-G solvation = -3661.685869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44806 -36.89131 -36.49886 -36.22862 -35.20349 -32.54422 -32.06764 -31.64056 -29.61487 -26.70757 -26.24527 -25.69129 -25.20301 -24.02062 -23.62902 -21.20010 -19.37780 -18.43616 -17.47778 -17.05460 -16.30494 -15.97998 -15.82586 -15.41178 -15.14074 -14.75507 -14.44102 -14.28899 -13.97173 -13.57004 -13.31480 -12.97511 -12.95729 -12.49367 -12.42187 -12.33962 -12.23446 -11.96106 -11.90418 -11.57309 -11.25745 -11.10626 -11.02169 -11.00967 -10.90041 -10.65783 -10.36711 -10.24267 -10.08305 -10.01046 -9.65817 -9.62686 -9.48996 -9.11265 -8.78802 -8.51077 -8.38331 -6.01605 -4.13708 0.85252 0.98763 1.15117 3.15426 3.27901 3.33383 3.34927 3.66547 4.09288 4.36068 4.47952 4.52343 4.67280 4.72746 4.90699 4.93866 5.00319 5.11448 5.20885 5.23972 5.41151 5.52169 5.61044 5.66433 5.74712 5.77678 5.83561 5.91775 5.99853 6.07833 6.27233 6.37212 6.42137 6.57206 6.73143 6.80416 6.82842 6.93805 7.07474 7.33748 7.52751 7.69318 7.91066 8.00037 8.11650 8.35028 8.84585 9.51495 10.99651 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026919 B = 0.003398 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.907575 B = 8237.241081 C = 8397.026879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.194 3.806 3 H 0.116 0.884 4 C 0.130 3.870 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.181 4.181 8 C 0.098 3.902 9 N -0.465 5.465 10 N -0.997 5.997 11 C 0.110 3.890 12 S 2.591 3.409 13 O -0.958 6.958 14 O -0.966 6.966 15 C -0.582 4.582 16 C 0.082 3.918 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.502 4.502 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.094 0.906 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -8.615 -18.566 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.086 3.914 3 H 0.134 0.866 4 C -0.010 4.010 5 C -0.186 4.186 6 C -0.100 4.100 7 C -0.201 4.201 8 C -0.059 4.059 9 N -0.174 5.174 10 N -0.832 5.832 11 C -0.035 4.035 12 S 2.690 3.310 13 O -0.949 6.949 14 O -0.956 6.956 15 C -0.716 4.716 16 C 0.080 3.920 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.033 -8.975 -17.693 20.245 hybrid contribution -1.210 0.894 -0.078 1.507 sum -5.243 -8.081 -17.771 20.214 Atomic orbital electron populations 1.22184 0.93533 1.03193 1.03028 1.19750 0.94651 0.95737 0.81221 0.86604 1.21601 0.94403 0.90467 0.94512 1.21940 1.01606 1.01645 0.93423 1.21547 0.95369 0.94480 0.98635 1.22126 1.02659 0.95791 0.99561 1.22833 0.94705 1.00147 0.88250 1.67623 1.10363 1.08549 1.30855 1.57594 1.70540 1.21249 1.33834 1.21345 1.01373 0.80829 0.99979 1.05799 0.76231 0.74189 0.74755 1.93536 1.67458 1.56993 1.76893 1.93515 1.73230 1.59671 1.69177 1.30587 1.15381 1.11335 1.14276 1.17923 0.92872 0.91276 0.89948 1.22271 0.99167 0.98490 1.02185 1.22270 0.99476 1.00362 0.99966 1.20916 0.92344 1.31741 1.09177 0.92355 1.24942 0.95250 0.96008 0.97533 1.69795 1.12220 1.39552 1.30628 0.86599 0.81019 0.79279 0.80733 1.20270 1.21196 1.20279 0.91372 0.91558 0.90831 0.84502 0.84866 0.85038 0.82817 0.91321 0.92265 0.91848 0.86516 0.86412 0.95401 0.88677 0.94487 0.94503 0.88690 0.95392 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.15 37.16 0.34 -1.28 16 2 C 0.19 2.55 2.84 -69.08 -0.20 2.36 16 3 H 0.12 1.55 6.84 -51.93 -0.36 1.19 16 4 C 0.13 1.66 5.88 -82.58 -0.49 1.18 16 5 C -0.17 -1.74 9.77 -39.44 -0.39 -2.13 16 6 C -0.07 -0.66 10.18 -39.28 -0.40 -1.05 16 7 C -0.18 -1.57 10.11 -39.44 -0.40 -1.96 16 8 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 9 N -0.47 -6.05 7.23 -9.47 -0.07 -6.11 16 10 N -1.00 -15.33 2.94 -115.86 -0.34 -15.67 16 11 C 0.11 1.50 8.56 59.85 0.51 2.02 16 12 S 2.59 50.58 4.40 -107.50 -0.47 50.11 16 13 O -0.96 -21.23 14.71 -57.54 -0.85 -22.08 16 14 O -0.97 -20.74 14.19 -57.54 -0.82 -21.56 16 15 C -0.58 -11.57 5.12 37.15 0.19 -11.38 16 16 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 17 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 18 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 19 C -0.50 -13.27 8.01 -34.44 -0.28 -13.55 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 22 N -0.88 -24.30 9.35 55.43 0.52 -23.78 16 23 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.65 6.66 -51.93 -0.35 0.31 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 35 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 36 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 38 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 39 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 40 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 41 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 44 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -33.10 360.58 -9.27 -42.37 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.77 Total: 4.62 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -0.89 Total: -29.01 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.11 Total: -45.56 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.66 Total: -43.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.47 Total: 50.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.10 -9.27 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295541378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.138 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds