Wall clock time and date at job start Tue Mar 31 2020 14:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46969 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99566 * 2 1 3 5 5 C 1.38225 * 119.61869 * 274.99900 * 4 2 1 6 6 C 1.38635 * 119.15939 * 179.97438 * 5 4 2 7 7 C 1.38675 * 118.41956 * 0.02562 * 6 5 4 8 8 C 1.38186 * 119.16332 * 0.27967 * 7 6 5 9 9 N 1.31860 * 119.61591 * 94.98255 * 4 2 1 10 10 N 1.46492 * 109.47463 * 239.99670 * 2 1 3 11 11 C 1.46504 * 119.99860 * 300.00409 * 10 2 1 12 12 S 1.65605 * 120.00243 * 119.99719 * 10 2 1 13 13 O 1.42096 * 104.27650 * 206.07664 * 12 10 2 14 14 O 1.42102 * 104.27234 * 333.93398 * 12 10 2 15 15 C 1.81399 * 104.44676 * 90.00130 * 12 10 2 16 16 C 1.52995 * 109.47139 * 179.97438 * 15 12 10 17 17 C 1.52997 * 109.47549 * 300.00396 * 16 15 12 18 18 C 1.53007 * 109.47020 * 60.00470 * 16 15 12 19 19 C 1.50703 * 109.47298 * 180.02562 * 16 15 12 20 20 H 1.07998 * 119.99711 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99959 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00055 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99796 * 179.97438 * 21 19 16 24 24 H 1.48493 * 109.46879 * 60.00220 * 23 21 19 25 25 H 1.48498 * 109.46846 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47282 * 299.99971 * 23 21 19 27 27 H 1.09000 * 109.47390 * 300.00088 * 1 2 3 28 28 H 1.08995 * 109.46892 * 60.00013 * 1 2 3 29 29 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.42054 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.78848 * 179.97438 * 6 5 4 32 32 H 1.08002 * 120.41399 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.61418 * 179.70216 * 8 7 6 34 34 H 1.08997 * 109.47508 * 90.00052 * 11 10 2 35 35 H 1.09007 * 109.46895 * 209.99489 * 11 10 2 36 36 H 1.08997 * 109.47198 * 329.99514 * 11 10 2 37 37 H 1.08997 * 109.47037 * 300.00456 * 15 12 10 38 38 H 1.09007 * 109.46759 * 60.00456 * 15 12 10 39 39 H 1.09004 * 109.47491 * 59.99670 * 17 16 15 40 40 H 1.09001 * 109.47532 * 179.97438 * 17 16 15 41 41 H 1.08999 * 109.46856 * 300.00026 * 17 16 15 42 42 H 1.08997 * 109.47205 * 59.99486 * 18 16 15 43 43 H 1.09001 * 109.47259 * 180.02562 * 18 16 15 44 44 H 1.09004 * 109.46658 * 299.99496 * 18 16 15 45 45 H 0.97000 * 119.99943 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1613 -0.0131 2.4171 6 6 2.6237 -0.6760 3.5434 7 6 2.9410 -2.0215 3.4334 8 6 2.7925 -2.6508 2.2122 9 7 2.3433 -1.9899 1.1630 10 7 2.0184 -0.6906 -1.1960 11 6 1.6644 -2.0932 -1.4278 12 16 2.9705 0.1141 -2.2862 13 8 2.7433 -0.5613 -3.5155 14 8 2.6122 1.4796 -2.1233 15 6 4.6649 -0.1729 -1.7057 16 6 5.6506 0.5285 -2.6424 17 6 5.4949 -0.0305 -4.0581 18 6 5.3628 2.0312 -2.6529 19 6 7.0584 0.2895 -2.1605 20 1 7.2325 -0.3030 -1.2746 21 6 8.1238 0.8282 -2.8502 22 7 7.9116 1.5510 -3.9282 23 14 9.8688 0.5326 -2.2525 24 1 10.1482 -0.9258 -2.2428 25 1 10.8253 1.2143 -3.1610 26 1 10.0199 1.0747 -0.8783 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.9042 1.0347 2.4663 31 1 2.7349 -0.1568 4.4838 32 1 3.3045 -2.5693 4.2903 33 1 3.0420 -3.6973 2.1172 34 1 0.7377 -2.1445 -1.9992 35 1 2.4629 -2.5820 -1.9862 36 1 1.5295 -2.5969 -0.4707 37 1 4.7757 0.2249 -0.6970 38 1 4.8701 -1.2435 -1.6987 39 1 4.4766 0.1420 -4.4069 40 1 6.1968 0.4695 -4.7255 41 1 5.6998 -1.1010 -4.0505 42 1 5.4738 2.4294 -1.6444 43 1 6.0647 2.5309 -3.3205 44 1 4.3446 2.2037 -3.0017 45 1 8.6612 1.9303 -4.4131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295541388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:09 Heat of formation + Delta-G solvation = -24.632467 kcal Electronic energy + Delta-G solvation = -27346.837378 eV Core-core repulsion = 23685.264371 eV Total energy + Delta-G solvation = -3661.573007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49165 -36.86700 -36.49487 -36.21045 -35.20455 -32.58365 -32.05072 -31.62397 -29.63154 -26.74012 -26.08458 -25.68188 -25.19880 -24.05742 -23.65052 -21.23728 -19.39589 -18.36985 -17.45250 -17.08257 -16.31247 -15.98102 -15.83411 -15.36499 -15.17181 -14.75378 -14.42331 -14.16121 -14.10471 -13.52994 -13.25425 -13.04578 -12.93664 -12.47225 -12.45847 -12.40276 -12.14054 -11.97488 -11.89661 -11.54280 -11.28302 -11.13204 -11.01446 -11.00656 -10.89367 -10.64540 -10.37425 -10.23716 -10.07246 -10.01147 -9.71183 -9.61658 -9.34815 -9.11782 -8.74915 -8.50523 -8.37477 -6.00671 -4.12413 0.88124 0.97730 1.13010 3.15750 3.27952 3.33247 3.35047 3.64383 4.04413 4.36170 4.45332 4.53760 4.68995 4.75671 4.91264 4.97545 4.99128 5.15658 5.22876 5.25073 5.36611 5.53753 5.61155 5.74309 5.78117 5.82581 5.90884 5.92998 6.00854 6.09377 6.23023 6.36285 6.44211 6.65715 6.74980 6.81736 6.83939 6.94588 7.08137 7.34731 7.53999 7.70196 7.86985 8.00889 8.12786 8.36433 8.85639 9.52519 11.00604 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004698 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.133581 B = 5958.017319 C = 7169.200948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.195 3.805 3 H 0.116 0.884 4 C 0.122 3.878 5 C -0.167 4.167 6 C -0.071 4.071 7 C -0.179 4.179 8 C 0.100 3.900 9 N -0.465 5.465 10 N -0.995 5.995 11 C 0.087 3.913 12 S 2.591 3.409 13 O -0.959 6.959 14 O -0.966 6.966 15 C -0.579 4.579 16 C 0.082 3.918 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.501 4.501 20 H 0.057 0.943 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.278 1.278 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -5.845 13.917 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.087 3.913 3 H 0.134 0.866 4 C -0.017 4.017 5 C -0.187 4.187 6 C -0.097 4.097 7 C -0.199 4.199 8 C -0.057 4.057 9 N -0.174 5.174 10 N -0.829 5.829 11 C -0.058 4.058 12 S 2.691 3.309 13 O -0.950 6.950 14 O -0.956 6.956 15 C -0.712 4.712 16 C 0.080 3.920 17 C -0.220 4.220 18 C -0.220 4.220 19 C -0.540 4.540 20 H 0.075 0.925 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.203 1.203 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.526 -5.719 12.210 19.098 hybrid contribution 1.691 -0.122 1.791 2.467 sum -11.835 -5.841 14.001 19.241 Atomic orbital electron populations 1.22058 0.93266 1.02894 1.02777 1.19741 0.95392 0.95420 0.80757 0.86592 1.21748 0.94603 0.90572 0.94812 1.21943 1.01713 1.01699 0.93373 1.21565 0.95059 0.94446 0.98666 1.22136 1.02341 0.95807 0.99580 1.22870 0.94306 1.00243 0.88292 1.67500 1.10777 1.08495 1.30669 1.57585 1.66450 1.22465 1.36426 1.21720 0.99854 0.80672 1.03572 1.05769 0.77310 0.73802 0.74066 1.93535 1.85012 1.75291 1.41127 1.93514 1.82675 1.33409 1.86043 1.30529 1.19664 1.10102 1.10940 1.17925 0.92857 0.91282 0.89973 1.22262 1.00058 1.00149 0.99552 1.22264 0.99746 0.98364 1.01641 1.20902 0.89226 1.32603 1.11265 0.92517 1.24930 0.99011 0.94884 0.94876 1.69792 1.31133 1.33922 1.17364 0.86611 0.84111 0.78388 0.78595 1.20288 1.21144 1.20344 0.91535 0.91061 0.91801 0.84459 0.84814 0.84968 0.82692 0.94024 0.91859 0.87688 0.86956 0.86554 0.95402 0.88688 0.94520 0.94597 0.88671 0.95373 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.18 37.16 0.34 -1.28 16 2 C 0.20 2.57 2.84 -69.08 -0.20 2.37 16 3 H 0.12 1.55 6.84 -51.93 -0.36 1.20 16 4 C 0.12 1.49 5.87 -82.58 -0.48 1.01 16 5 C -0.17 -1.69 9.77 -39.44 -0.39 -2.08 16 6 C -0.07 -0.62 10.18 -39.27 -0.40 -1.02 16 7 C -0.18 -1.54 10.11 -39.44 -0.40 -1.94 16 8 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 9 N -0.47 -5.74 6.69 -9.47 -0.06 -5.80 16 10 N -0.99 -15.44 2.94 -115.85 -0.34 -15.78 16 11 C 0.09 1.21 8.85 59.85 0.53 1.74 16 12 S 2.59 51.09 4.40 -107.50 -0.47 50.62 16 13 O -0.96 -21.18 14.71 -57.54 -0.85 -22.03 16 14 O -0.97 -20.54 14.19 -57.54 -0.82 -21.36 16 15 C -0.58 -12.08 5.12 37.15 0.19 -11.89 16 16 C 0.08 2.05 0.52 -155.66 -0.08 1.97 16 17 C -0.16 -4.13 7.77 37.16 0.29 -3.84 16 18 C -0.16 -4.09 7.78 37.16 0.29 -3.80 16 19 C -0.50 -13.49 8.01 -34.44 -0.28 -13.77 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 22 N -0.88 -24.49 9.35 55.43 0.52 -23.97 16 23 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.90 7.79 -51.92 -0.40 0.49 16 36 H 0.11 1.31 5.23 -51.93 -0.27 1.03 16 37 H 0.11 2.20 8.14 -51.93 -0.42 1.77 16 38 H 0.12 2.29 8.14 -51.92 -0.42 1.87 16 39 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 40 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 44 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -32.68 361.33 -9.29 -41.97 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.82 Total: 5.03 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -0.87 Total: -30.07 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.11 Total: -45.55 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.66 Total: -43.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.47 Total: 50.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.68 -9.29 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295541388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.338 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds