Wall clock time and date at job start Tue Mar 31 2020 15:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65600 * 119.99574 * 2 1 4 4 O 1.42109 * 106.39643 * 178.53881 * 3 2 1 5 5 O 1.42102 * 106.40218 * 311.45213 * 3 2 1 6 6 C 1.76195 * 107.22307 * 64.99913 * 3 2 1 7 7 C 1.38236 * 119.99683 * 269.72504 * 6 3 2 8 8 C 1.38238 * 120.00072 * 179.81107 * 7 6 3 9 9 C 1.38233 * 119.99526 * 0.39257 * 8 7 6 10 10 C 1.50706 * 119.99849 * 179.83690 * 9 8 7 11 11 H 1.09004 * 109.47111 * 200.02900 * 10 9 8 12 12 C 1.52992 * 109.47066 * 80.02439 * 10 9 8 13 13 N 1.46905 * 109.46750 * 320.02381 * 10 9 8 14 14 C 1.46906 * 110.99705 * 208.82563 * 13 10 9 15 15 H 1.09000 * 109.47225 * 19.43564 * 14 13 10 16 16 C 1.52996 * 109.46997 * 259.43644 * 14 13 10 17 17 C 1.52998 * 109.46858 * 139.43217 * 14 13 10 18 18 C 1.50702 * 109.47511 * 295.00173 * 17 14 13 19 19 H 1.08004 * 119.99740 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00209 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99866 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47354 * 359.97438 * 22 20 18 24 24 H 1.48509 * 109.46972 * 120.00188 * 22 20 18 25 25 H 1.48503 * 109.47231 * 239.99967 * 22 20 18 26 26 C 1.38231 * 120.00194 * 359.86305 * 9 8 7 27 27 C 1.38228 * 120.00224 * 359.94932 * 26 9 8 28 28 H 1.08998 * 109.47412 * 300.00147 * 1 2 3 29 29 H 1.09003 * 109.46874 * 60.00611 * 1 2 3 30 30 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99785 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.00206 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.00393 * 180.22858 * 8 7 6 34 34 H 1.08998 * 109.47430 * 292.66880 * 12 10 9 35 35 H 1.08994 * 109.47386 * 52.67004 * 12 10 9 36 36 H 1.08999 * 109.46903 * 172.67020 * 12 10 9 37 37 H 1.00894 * 111.00137 * 332.77680 * 13 10 9 38 38 H 1.08993 * 109.47405 * 66.79226 * 16 14 13 39 39 H 1.08999 * 109.46748 * 186.79090 * 16 14 13 40 40 H 1.08998 * 109.47196 * 306.78624 * 16 14 13 41 41 H 1.09003 * 109.47080 * 55.00555 * 17 14 13 42 42 H 1.09004 * 109.46749 * 175.00084 * 17 14 13 43 43 H 0.96998 * 119.99964 * 180.02562 * 21 20 18 44 44 H 1.08005 * 119.99777 * 179.97438 * 26 9 8 45 45 H 1.08003 * 120.00446 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 3.6738 1.1003 0.0348 5 8 1.7120 2.2329 -1.0217 6 6 1.9378 2.2416 1.5253 7 6 0.8621 3.1051 1.6160 8 6 0.5811 3.7356 2.8137 9 6 1.3805 3.5088 3.9184 10 6 1.0763 4.1990 5.2231 11 1 1.9668 4.1962 5.8518 12 6 -0.0559 3.4601 5.9391 13 7 0.6671 5.5851 4.9600 14 6 1.0120 6.4592 6.0892 15 1 1.7785 5.9803 6.6985 16 6 -0.2345 6.7081 6.9407 17 6 1.5419 7.7928 5.5585 18 6 2.8368 7.5620 4.8229 19 1 3.2416 6.5639 4.7424 20 6 3.5052 8.6250 4.2536 21 7 3.0130 9.8406 4.3530 22 14 5.1106 8.3389 3.3425 23 1 5.4473 6.8929 3.3748 24 1 4.9655 8.7826 1.9327 25 1 6.1957 9.1140 3.9962 26 6 2.4592 2.6494 3.8261 27 6 2.7380 2.0159 2.6296 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 0.2397 3.2852 0.7519 33 1 -0.2614 4.4074 2.8856 34 1 -0.9798 3.5739 5.3720 35 1 0.1936 2.4020 6.0182 36 1 -0.1884 3.8778 6.9371 37 1 1.0740 5.9256 4.1018 38 1 -0.5416 5.7768 7.4163 39 1 -0.0090 7.4501 7.7067 40 1 -1.0409 7.0750 6.3058 41 1 0.8105 8.2296 4.8784 42 1 1.7141 8.4731 6.3926 43 1 3.4831 10.5884 3.9522 44 1 3.0841 2.4725 4.6892 45 1 3.5811 1.3448 2.5574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299521441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:35 Heat of formation + Delta-G solvation = -60.296361 kcal Electronic energy + Delta-G solvation = -25988.797912 eV Core-core repulsion = 22325.678403 eV Total energy + Delta-G solvation = -3663.119510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.64308 -37.36705 -36.97196 -35.97397 -35.27430 -33.78280 -32.19432 -31.08466 -29.76499 -28.18655 -27.29677 -26.30769 -23.88117 -23.11204 -22.81235 -20.52676 -19.70154 -19.57604 -18.19590 -17.68138 -16.52149 -16.41584 -15.94697 -15.66157 -14.84755 -14.76704 -14.44754 -14.38826 -14.17892 -13.98521 -13.56900 -13.39707 -13.15116 -13.00962 -12.55102 -12.22056 -12.14781 -12.14356 -12.06331 -11.97218 -11.87500 -11.61619 -11.41547 -11.32294 -11.07330 -11.01349 -10.74491 -10.52729 -10.43255 -10.24878 -9.91754 -9.31105 -9.15697 -9.08225 -9.01719 -8.44336 -7.82358 -6.07360 -4.11163 0.23900 0.79076 1.32399 2.83770 3.27603 3.36465 3.39648 3.43544 3.68835 4.21831 4.40684 4.56184 4.69766 4.74895 4.86535 4.88403 5.11025 5.29163 5.33220 5.34328 5.39628 5.44835 5.51652 5.59188 5.73548 5.83388 5.89518 5.92139 6.03185 6.07290 6.13491 6.23594 6.27936 6.37777 6.48862 6.59159 6.60536 6.84365 6.85591 6.91000 7.41850 7.57531 7.90196 7.95976 8.13847 8.30415 8.95449 9.54494 11.03286 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003850 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.120107 B = 7270.442245 C = 8831.956453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.123 6.123 3 S 2.698 3.302 4 O -0.962 6.962 5 O -0.957 6.957 6 C -0.685 4.685 7 C -0.023 4.023 8 C -0.120 4.120 9 C -0.018 4.018 10 C 0.113 3.887 11 H 0.056 0.944 12 C -0.132 4.132 13 N -0.676 5.676 14 C 0.086 3.914 15 H 0.038 0.962 16 C -0.134 4.134 17 C 0.014 3.986 18 C -0.526 4.526 19 H 0.051 0.949 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.136 4.136 27 C -0.021 4.021 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.417 0.583 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.358 0.642 38 H 0.038 0.962 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.130 0.870 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 -21.336 -3.511 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.788 3.212 4 O -0.952 6.952 5 O -0.947 6.947 6 C -0.773 4.773 7 C -0.043 4.043 8 C -0.139 4.139 9 C -0.019 4.019 10 C 0.003 3.997 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.310 5.310 14 C -0.023 4.023 15 H 0.056 0.944 16 C -0.192 4.192 17 C -0.023 4.023 18 C -0.564 4.564 19 H 0.069 0.931 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.713 3.287 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.155 4.155 27 C -0.040 4.040 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.180 0.820 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.148 0.852 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.671 -20.759 -4.025 22.495 hybrid contribution 1.876 -0.160 0.171 1.891 sum -5.795 -20.920 -3.854 22.047 Atomic orbital electron populations 1.21501 0.78452 1.04131 1.02256 1.55355 1.16205 1.24411 1.92220 1.01746 0.72803 0.72634 0.74058 1.93590 1.30818 1.83445 1.87327 1.93587 1.78683 1.68239 1.54149 1.30655 1.08275 1.17135 1.21227 1.20930 0.93467 0.91771 0.98114 1.21257 1.00767 0.99954 0.91933 1.20537 0.92594 0.92877 0.95865 1.20714 0.97108 0.90386 0.91474 0.92614 1.21829 0.98433 0.98227 1.00530 1.60829 1.63174 0.99609 1.07400 1.21735 0.94105 0.95645 0.90812 0.94367 1.21849 0.98831 0.99620 0.98933 1.19418 0.95651 0.90755 0.96510 1.21186 1.07030 0.93487 1.34733 0.93066 1.24964 0.97588 0.95196 0.96132 1.69965 1.39143 0.98889 1.44797 0.86638 0.83854 0.78372 0.79800 1.19789 1.20801 1.20946 1.21191 0.97912 0.98256 0.98177 1.20795 0.95899 0.96038 0.91267 0.91971 0.91263 0.90012 0.74901 0.84372 0.83905 0.91863 0.93296 0.92115 0.82033 0.94299 0.93395 0.92720 0.95729 0.95971 0.92937 0.85202 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 11.14 59.85 0.67 1.15 16 2 N -1.12 -8.37 6.19 -16.63 -0.10 -8.47 16 3 S 2.70 31.56 5.74 -107.50 -0.62 30.95 16 4 O -0.96 -13.79 17.28 -57.17 -0.99 -14.78 16 5 O -0.96 -13.89 17.00 -57.17 -0.97 -14.86 16 6 C -0.68 -8.64 5.95 -39.58 -0.24 -8.87 16 7 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 8 C -0.12 -1.65 8.93 -39.58 -0.35 -2.00 16 9 C -0.02 -0.26 4.71 -104.62 -0.49 -0.75 16 10 C 0.11 1.70 2.81 -68.86 -0.19 1.50 16 11 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 12 C -0.13 -1.64 9.42 37.15 0.35 -1.29 16 13 N -0.68 -11.97 5.60 -100.95 -0.57 -12.53 16 14 C 0.09 1.69 2.64 -67.71 -0.18 1.51 16 15 H 0.04 0.77 7.15 -51.93 -0.37 0.40 16 16 C -0.13 -2.27 9.52 37.16 0.35 -1.92 16 17 C 0.01 0.35 4.44 -27.88 -0.12 0.22 16 18 C -0.53 -14.25 8.14 -34.44 -0.28 -14.53 16 19 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 22 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.14 -1.82 9.67 -39.59 -0.38 -2.21 16 27 C -0.02 -0.26 9.52 -39.59 -0.38 -0.64 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.42 2.20 8.96 -34.48 -0.31 1.89 16 32 H 0.14 1.51 7.61 -52.49 -0.40 1.11 16 33 H 0.14 1.88 7.71 -52.49 -0.40 1.48 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.53 8.13 -51.93 -0.42 0.10 16 36 H 0.06 0.76 6.61 -51.93 -0.34 0.41 16 37 H 0.36 7.17 6.47 -39.29 -0.25 6.91 16 38 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.13 1.52 8.04 -52.48 -0.42 1.10 16 45 H 0.14 1.48 7.62 -52.48 -0.40 1.08 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -33.81 380.96 -10.47 -44.28 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.96 Total: 5.28 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -1.72 Total: -26.81 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.07 Total: -46.54 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.96 Total: -29.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.62 Total: 30.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.81 -10.47 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299521441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.016 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds