Wall clock time and date at job start Tue Mar 31 2020 15:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65600 * 119.99574 * 2 1 4 4 O 1.42109 * 106.39643 * 178.53881 * 3 2 1 5 5 O 1.42102 * 106.40218 * 311.45213 * 3 2 1 6 6 C 1.76195 * 107.22307 * 64.99913 * 3 2 1 7 7 C 1.38236 * 119.99683 * 269.72504 * 6 3 2 8 8 C 1.38238 * 120.00072 * 179.81107 * 7 6 3 9 9 C 1.38233 * 119.99526 * 0.39257 * 8 7 6 10 10 C 1.50706 * 119.99849 * 179.83690 * 9 8 7 11 11 H 1.09004 * 109.47111 * 200.02900 * 10 9 8 12 12 C 1.52992 * 109.47066 * 80.02439 * 10 9 8 13 13 N 1.46905 * 109.46750 * 320.02381 * 10 9 8 14 14 C 1.46906 * 110.99705 * 208.82563 * 13 10 9 15 15 H 1.09000 * 109.47225 * 19.43564 * 14 13 10 16 16 C 1.52996 * 109.46997 * 259.43644 * 14 13 10 17 17 C 1.52998 * 109.46858 * 139.43217 * 14 13 10 18 18 C 1.50702 * 109.47511 * 295.00173 * 17 14 13 19 19 H 1.08004 * 119.99740 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00209 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99866 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47354 * 359.97438 * 22 20 18 24 24 H 1.48509 * 109.46972 * 120.00188 * 22 20 18 25 25 H 1.48503 * 109.47231 * 239.99967 * 22 20 18 26 26 C 1.38231 * 120.00194 * 359.86305 * 9 8 7 27 27 C 1.38228 * 120.00224 * 359.94932 * 26 9 8 28 28 H 1.08998 * 109.47412 * 300.00147 * 1 2 3 29 29 H 1.09003 * 109.46874 * 60.00611 * 1 2 3 30 30 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99785 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.00206 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.00393 * 180.22858 * 8 7 6 34 34 H 1.08998 * 109.47430 * 292.66880 * 12 10 9 35 35 H 1.08994 * 109.47386 * 52.67004 * 12 10 9 36 36 H 1.08999 * 109.46903 * 172.67020 * 12 10 9 37 37 H 1.00894 * 111.00137 * 332.77680 * 13 10 9 38 38 H 1.08993 * 109.47405 * 66.79226 * 16 14 13 39 39 H 1.08999 * 109.46748 * 186.79090 * 16 14 13 40 40 H 1.08998 * 109.47196 * 306.78624 * 16 14 13 41 41 H 1.09003 * 109.47080 * 55.00555 * 17 14 13 42 42 H 1.09004 * 109.46749 * 175.00084 * 17 14 13 43 43 H 0.96998 * 119.99964 * 180.02562 * 21 20 18 44 44 H 1.08005 * 119.99777 * 179.97438 * 26 9 8 45 45 H 1.08003 * 120.00446 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 3.6738 1.1003 0.0348 5 8 1.7120 2.2329 -1.0217 6 6 1.9378 2.2416 1.5253 7 6 0.8621 3.1051 1.6160 8 6 0.5811 3.7356 2.8137 9 6 1.3805 3.5088 3.9184 10 6 1.0763 4.1990 5.2231 11 1 1.9668 4.1962 5.8518 12 6 -0.0559 3.4601 5.9391 13 7 0.6671 5.5851 4.9600 14 6 1.0120 6.4592 6.0892 15 1 1.7785 5.9803 6.6985 16 6 -0.2345 6.7081 6.9407 17 6 1.5419 7.7928 5.5585 18 6 2.8368 7.5620 4.8229 19 1 3.2416 6.5639 4.7424 20 6 3.5052 8.6250 4.2536 21 7 3.0130 9.8406 4.3530 22 14 5.1106 8.3389 3.3425 23 1 5.4473 6.8929 3.3748 24 1 4.9655 8.7826 1.9327 25 1 6.1957 9.1140 3.9962 26 6 2.4592 2.6494 3.8261 27 6 2.7380 2.0159 2.6296 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 0.2397 3.2852 0.7519 33 1 -0.2614 4.4074 2.8856 34 1 -0.9798 3.5739 5.3720 35 1 0.1936 2.4020 6.0182 36 1 -0.1884 3.8778 6.9371 37 1 1.0740 5.9256 4.1018 38 1 -0.5416 5.7768 7.4163 39 1 -0.0090 7.4501 7.7067 40 1 -1.0409 7.0750 6.3058 41 1 0.8105 8.2296 4.8784 42 1 1.7141 8.4731 6.3926 43 1 3.4831 10.5884 3.9522 44 1 3.0841 2.4725 4.6892 45 1 3.5811 1.3448 2.5574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299521441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:35 Heat of formation + Delta-G solvation = -84.675484 kcal Electronic energy + Delta-G solvation = -25989.855070 eV Core-core repulsion = 22325.678403 eV Total energy + Delta-G solvation = -3664.176668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71233 -38.39676 -38.37562 -37.01235 -35.89685 -35.42042 -33.98042 -32.09459 -30.95727 -29.46540 -29.15720 -26.83680 -25.11802 -24.84364 -23.90199 -21.66395 -21.17201 -20.57603 -19.09903 -18.60834 -18.53526 -17.41011 -17.21420 -16.69435 -16.47934 -15.95609 -15.79216 -15.50972 -15.22838 -14.88170 -14.64973 -14.46764 -14.36284 -13.96544 -13.79393 -13.72948 -13.42162 -13.29259 -13.27609 -13.21651 -13.18602 -12.98832 -12.70289 -12.53595 -12.50539 -12.39529 -12.22728 -12.17594 -11.93694 -11.67528 -11.17914 -11.01117 -10.62239 -10.54784 -10.17940 -10.03195 -9.27422 -8.24351 -6.33833 -0.67234 -0.23548 0.30760 1.31974 1.35325 1.44718 2.01037 2.34431 2.44705 2.75354 3.07794 3.28086 3.33494 3.62197 3.83075 3.92145 4.22739 4.25098 4.33907 4.34642 4.48185 4.51501 4.66946 4.67987 4.72008 4.72818 4.86091 4.89729 4.91245 4.98666 5.01118 5.06457 5.07838 5.15258 5.23669 5.34324 5.41545 5.46888 5.49689 5.58019 5.81546 5.83779 6.10914 6.17596 6.38290 6.55744 6.82179 7.35416 8.87163 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003850 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.120107 B = 7270.442245 C = 8831.956453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.107 6.107 3 S 2.718 3.282 4 O -0.990 6.990 5 O -0.987 6.987 6 C -0.687 4.687 7 C -0.028 4.028 8 C -0.129 4.129 9 C -0.033 4.033 10 C 0.113 3.887 11 H 0.046 0.954 12 C -0.124 4.124 13 N -0.671 5.671 14 C 0.096 3.904 15 H 0.034 0.966 16 C -0.126 4.126 17 C 0.021 3.979 18 C -0.530 4.530 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.947 3.053 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.277 1.277 26 C -0.144 4.144 27 C -0.027 4.027 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.430 0.570 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.343 0.657 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.051 0.949 41 H -0.002 1.002 42 H -0.005 1.005 43 H 0.263 0.737 44 H 0.144 0.856 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 -23.802 -3.596 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.870 5.870 3 S 2.807 3.193 4 O -0.980 6.980 5 O -0.977 6.977 6 C -0.774 4.774 7 C -0.048 4.048 8 C -0.148 4.148 9 C -0.034 4.034 10 C 0.004 3.996 11 H 0.064 0.936 12 C -0.182 4.182 13 N -0.303 5.303 14 C -0.014 4.014 15 H 0.052 0.948 16 C -0.184 4.184 17 C -0.017 4.017 18 C -0.568 4.568 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.203 1.203 26 C -0.163 4.163 27 C -0.046 4.046 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.267 0.733 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.017 0.983 42 H 0.014 0.986 43 H 0.072 0.928 44 H 0.162 0.838 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.851 -23.253 -4.090 24.881 hybrid contribution 1.888 0.542 0.181 1.972 sum -5.963 -22.711 -3.908 23.804 Atomic orbital electron populations 1.21788 0.76982 1.06250 1.02443 1.54972 1.16997 1.23384 1.91678 1.00973 0.72077 0.72930 0.73287 1.93545 1.32905 1.83968 1.87552 1.93549 1.79092 1.69769 1.55248 1.30832 1.08012 1.17057 1.21533 1.21138 0.93799 0.91519 0.98297 1.21333 1.00967 1.00241 0.92287 1.20553 0.93456 0.93718 0.95684 1.20786 0.97768 0.88927 0.92167 0.93558 1.21762 0.97358 0.99005 1.00058 1.60910 1.62806 1.00750 1.05852 1.21546 0.95195 0.93167 0.91457 0.94786 1.21758 0.97188 1.01026 0.98421 1.19294 0.94511 0.93014 0.94833 1.21509 1.07673 0.93413 1.34244 0.92894 1.25754 1.00829 0.95043 0.97147 1.70076 1.40721 0.99739 1.46098 0.85668 0.80126 0.78440 0.78486 1.19204 1.20637 1.20299 1.21407 0.97765 0.98114 0.99054 1.21065 0.96342 0.96153 0.91020 0.91475 0.91535 0.86961 0.73333 0.82921 0.83927 0.91682 0.91321 0.91982 0.83797 0.91529 0.93466 0.93023 0.98320 0.98617 0.92811 0.83811 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 11.14 127.77 1.42 2.07 16 2 N -1.11 -14.06 6.19 -206.52 -1.28 -15.34 16 3 S 2.72 60.08 5.74 -56.49 -0.32 59.76 16 4 O -0.99 -27.24 17.28 -128.00 -2.21 -29.46 16 5 O -0.99 -27.81 17.00 -128.00 -2.18 -29.99 16 6 C -0.69 -16.39 5.95 22.27 0.13 -16.25 16 7 C -0.03 -0.69 9.52 22.27 0.21 -0.48 16 8 C -0.13 -3.45 8.93 22.27 0.20 -3.25 16 9 C -0.03 -0.92 4.71 -19.87 -0.09 -1.01 16 10 C 0.11 3.26 2.81 44.17 0.12 3.38 16 11 H 0.05 1.43 7.12 -2.38 -0.02 1.41 16 12 C -0.12 -2.80 9.42 71.98 0.68 -2.13 16 13 N -0.67 -23.56 5.60 -473.30 -2.65 -26.21 16 14 C 0.10 3.76 2.64 44.91 0.12 3.88 16 15 H 0.03 1.36 7.15 -2.39 -0.02 1.34 16 16 C -0.13 -4.14 9.52 71.98 0.69 -3.45 16 17 C 0.02 1.07 4.44 29.85 0.13 1.20 16 18 C -0.53 -29.12 8.14 25.60 0.21 -28.91 16 19 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 20 C 0.01 0.62 5.46 84.65 0.46 1.08 16 21 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 22 Si 0.95 44.92 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 C -0.14 -3.65 9.67 22.27 0.22 -3.43 16 27 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.43 3.46 8.96 -96.75 -0.87 2.59 16 32 H 0.15 3.18 7.61 -2.91 -0.02 3.15 16 33 H 0.14 3.72 7.71 -2.91 -0.02 3.69 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 36 H 0.06 1.38 6.61 -2.39 -0.02 1.36 16 37 H 0.34 13.88 6.47 -89.70 -0.58 13.30 16 38 H 0.07 1.82 6.57 -2.39 -0.02 1.80 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 43 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 45 H 0.15 3.04 7.62 -2.91 -0.02 3.01 16 Total: -1.00 -72.82 380.96 -2.07 -74.89 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.45 Total: 22.66 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.71 Total: -47.73 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -3.64 Total: -97.07 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -4.39 Total: -59.44 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 60.08 SS G_CDS: -0.32 Total: 59.76 kcal Total: -72.82 -2.07 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299521441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.789 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds