Wall clock time and date at job start Tue Mar 31 2020 15:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65595 * 119.99584 * 2 1 4 4 O 1.42100 * 106.40124 * 178.53653 * 3 2 1 5 5 O 1.42102 * 106.40284 * 311.45086 * 3 2 1 6 6 C 1.76198 * 107.22494 * 64.99287 * 3 2 1 7 7 C 1.38229 * 120.00139 * 269.72941 * 6 3 2 8 8 C 1.38240 * 119.99975 * 179.76209 * 7 6 3 9 9 C 1.38233 * 119.99946 * 0.50454 * 8 7 6 10 10 C 1.50700 * 119.99660 * 179.72401 * 9 8 7 11 11 H 1.09002 * 109.46493 * 160.02585 * 10 9 8 12 12 C 1.53005 * 109.47191 * 280.02178 * 10 9 8 13 13 N 1.46895 * 109.47439 * 40.02498 * 10 9 8 14 14 C 1.46899 * 111.00341 * 146.90231 * 13 10 9 15 15 H 1.09003 * 109.46949 * 332.20148 * 14 13 10 16 16 C 1.53004 * 109.47193 * 92.19851 * 14 13 10 17 17 C 1.52996 * 109.47554 * 212.20090 * 14 13 10 18 18 C 1.50697 * 109.47259 * 64.99679 * 17 14 13 19 19 H 1.08006 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.37872 * 120.00399 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00079 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00198 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47165 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47233 * 120.00160 * 22 20 18 25 25 H 1.48504 * 109.46984 * 239.99851 * 22 20 18 26 26 C 1.38231 * 120.00154 * 359.74762 * 9 8 7 27 27 C 1.38233 * 119.99920 * 89.99604 * 6 3 2 28 28 H 1.08996 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47601 * 300.00860 * 1 2 3 30 30 H 1.09004 * 109.46707 * 60.00912 * 1 2 3 31 31 H 0.96995 * 120.00389 * 179.97438 * 2 1 3 32 32 H 1.08000 * 119.99980 * 359.97438 * 7 6 3 33 33 H 1.08007 * 119.99771 * 180.22762 * 8 7 6 34 34 H 1.08999 * 109.46623 * 185.65521 * 12 10 9 35 35 H 1.08999 * 109.46898 * 305.65458 * 12 10 9 36 36 H 1.08993 * 109.46978 * 65.65239 * 12 10 9 37 37 H 1.00896 * 111.00079 * 270.85798 * 13 10 9 38 38 H 1.08999 * 109.46811 * 54.33342 * 16 14 13 39 39 H 1.08994 * 109.46933 * 174.33966 * 16 14 13 40 40 H 1.09000 * 109.46949 * 294.34340 * 16 14 13 41 41 H 1.08995 * 109.47511 * 184.99952 * 17 14 13 42 42 H 1.09009 * 109.47011 * 305.00356 * 17 14 13 43 43 H 0.97000 * 120.00218 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.00161 * 179.97438 * 26 9 8 45 45 H 1.08002 * 120.00323 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6737 1.1004 0.0348 5 8 1.7120 2.2328 -1.0217 6 6 1.9376 2.2417 1.5252 7 6 0.8620 3.1052 1.6159 8 6 0.5804 3.7349 2.8139 9 6 1.3806 3.5093 3.9182 10 6 1.0771 4.2006 5.2224 11 1 1.5560 3.6611 6.0396 12 6 1.6104 5.6340 5.1760 13 7 -0.3758 4.2255 5.4371 14 6 -0.6985 4.1300 6.8670 15 1 0.0949 3.5894 7.3832 16 6 -0.8244 5.5363 7.4565 17 6 -2.0222 3.3831 7.0425 18 6 -1.8618 1.9598 6.5741 19 1 -0.9106 1.6216 6.1901 20 6 -2.9291 1.0892 6.6358 21 7 -4.0875 1.5011 7.1029 22 14 -2.7301 -0.6753 6.0558 23 1 -1.3397 -0.8855 5.5782 24 1 -3.0126 -1.6013 7.1818 25 1 -3.6799 -0.9416 4.9457 26 6 2.4593 2.6498 3.8261 27 6 2.7378 2.0160 2.6295 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 1.9501 -0.8400 0.0004 32 1 0.2396 3.2851 0.7518 33 1 -0.2623 4.4068 2.8857 34 1 1.4812 6.1015 6.1521 35 1 2.6692 5.6195 4.9174 36 1 1.0608 6.2020 4.4254 37 1 -0.7878 5.0506 5.0278 38 1 -1.5466 6.1102 6.8759 39 1 -1.1617 5.4679 8.4907 40 1 0.1454 6.0326 7.4226 41 1 -2.3063 3.3894 8.0947 42 1 -2.7972 3.8741 6.4538 43 1 -4.8383 0.8885 7.1466 44 1 3.0847 2.4738 4.6888 45 1 3.5810 1.3450 2.5574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299521443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:38 Heat of formation + Delta-G solvation = -79.969175 kcal Electronic energy + Delta-G solvation = -26071.024214 eV Core-core repulsion = 22407.051628 eV Total energy + Delta-G solvation = -3663.972587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60580 -38.45552 -38.36226 -36.99089 -35.90932 -35.35969 -33.91527 -32.01528 -31.05620 -29.18116 -28.96902 -26.87053 -25.02002 -24.97193 -23.82170 -21.80049 -21.37726 -20.55171 -19.07139 -18.59056 -18.36716 -17.34776 -17.03997 -16.64638 -16.38836 -15.80492 -15.72148 -15.45065 -15.23964 -14.72362 -14.52180 -14.42181 -14.34974 -14.10289 -13.87183 -13.78513 -13.63134 -13.32634 -13.25659 -13.17115 -13.16587 -12.95650 -12.69870 -12.56273 -12.53502 -12.38115 -12.16971 -11.94796 -11.86735 -11.77498 -11.04677 -11.01365 -10.56109 -10.47344 -10.07136 -9.94565 -9.03464 -8.07832 -6.11644 -0.62801 -0.12942 0.39815 1.39623 1.40828 1.52867 2.02106 2.47651 2.49198 2.79689 3.23549 3.31932 3.36833 3.82278 3.86439 3.97048 4.14987 4.20791 4.27642 4.38381 4.44733 4.46353 4.50926 4.59227 4.64080 4.74392 4.81452 4.86695 4.89214 4.97847 5.02779 5.05380 5.12709 5.16027 5.26157 5.33001 5.36259 5.50752 5.59676 5.73541 5.92252 5.93111 6.08473 6.35972 6.49602 6.75006 7.02904 7.53740 9.04486 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.004225 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.738327 B = 6625.028077 C = 8491.241486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.111 6.111 3 S 2.722 3.278 4 O -0.986 6.986 5 O -0.985 6.985 6 C -0.692 4.692 7 C -0.033 4.033 8 C -0.125 4.125 9 C -0.010 4.010 10 C 0.115 3.885 11 H 0.082 0.918 12 C -0.167 4.167 13 N -0.672 5.672 14 C 0.103 3.897 15 H 0.059 0.941 16 C -0.170 4.170 17 C 0.037 3.963 18 C -0.490 4.490 19 H 0.054 0.946 20 C -0.006 4.006 21 N -0.941 5.941 22 Si 0.950 3.050 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.282 1.282 26 C -0.148 4.148 27 C -0.029 4.029 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.429 0.571 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.341 0.659 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.071 0.929 41 H -0.011 1.011 42 H -0.010 1.010 43 H 0.257 0.743 44 H 0.146 0.854 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.417 2.501 -10.860 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.874 5.874 3 S 2.811 3.189 4 O -0.976 6.976 5 O -0.975 6.975 6 C -0.780 4.780 7 C -0.053 4.053 8 C -0.144 4.144 9 C -0.011 4.011 10 C 0.005 3.995 11 H 0.100 0.900 12 C -0.226 4.226 13 N -0.303 5.303 14 C -0.006 4.006 15 H 0.077 0.923 16 C -0.229 4.229 17 C 0.000 4.000 18 C -0.528 4.528 19 H 0.072 0.928 20 C -0.201 4.201 21 N -0.584 5.584 22 Si 0.776 3.224 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.208 1.208 26 C -0.167 4.167 27 C -0.048 4.048 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.007 0.993 42 H 0.009 0.991 43 H 0.066 0.934 44 H 0.164 0.836 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.576 2.231 -11.612 18.003 hybrid contribution -0.472 -0.370 1.027 1.189 sum 13.104 1.861 -10.584 16.947 Atomic orbital electron populations 1.21724 0.77471 1.06004 1.02230 1.55024 1.16725 1.23878 1.91752 1.00862 0.72021 0.72663 0.73325 1.93539 1.32529 1.83918 1.87624 1.93539 1.79091 1.69584 1.55289 1.30743 1.08382 1.17143 1.21701 1.21088 0.93598 0.92059 0.98513 1.21212 0.99742 1.01256 0.92216 1.20460 0.92473 0.92910 0.95268 1.20673 0.89093 0.96018 0.93699 0.89983 1.22490 1.02247 0.94895 1.02955 1.60336 1.08836 1.46294 1.14829 1.21512 0.97734 0.94515 0.86860 0.92317 1.22510 1.01913 0.97114 1.01346 1.19015 0.92606 0.94443 0.93944 1.21461 0.96344 0.96353 1.38650 0.92789 1.25808 0.95328 1.02574 0.96437 1.70096 1.02391 1.36636 1.49227 0.85623 0.78212 0.80701 0.77849 1.18998 1.21076 1.20811 1.21392 0.98606 0.97975 0.98764 1.21050 0.96603 0.95963 0.91161 0.87522 0.92447 0.90896 0.73457 0.83482 0.84637 0.91065 0.91191 0.91682 0.83932 0.92664 0.92954 0.91024 0.99273 0.99122 0.93419 0.83602 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 11.14 127.77 1.42 2.57 16 2 N -1.11 -18.94 6.19 -206.53 -1.28 -20.22 16 3 S 2.72 62.47 5.74 -56.49 -0.32 62.15 16 4 O -0.99 -26.54 17.28 -128.00 -2.21 -28.75 16 5 O -0.99 -27.50 17.00 -128.00 -2.18 -29.67 16 6 C -0.69 -17.19 5.95 22.27 0.13 -17.05 16 7 C -0.03 -0.86 9.52 22.27 0.21 -0.65 16 8 C -0.13 -3.42 9.32 22.27 0.21 -3.21 16 9 C -0.01 -0.27 4.95 -19.87 -0.10 -0.37 16 10 C 0.12 3.02 2.84 44.17 0.13 3.14 16 11 H 0.08 2.22 7.07 -2.39 -0.02 2.20 16 12 C -0.17 -3.31 9.03 71.98 0.65 -2.66 16 13 N -0.67 -21.75 5.11 -473.31 -2.42 -24.17 16 14 C 0.10 3.77 2.58 44.92 0.12 3.89 16 15 H 0.06 2.19 7.21 -2.39 -0.02 2.17 16 16 C -0.17 -4.93 9.06 71.98 0.65 -4.28 16 17 C 0.04 1.87 4.65 29.85 0.14 2.01 16 18 C -0.49 -26.93 8.84 25.60 0.23 -26.70 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 21 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 22 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 C -0.15 -3.71 9.67 22.27 0.22 -3.50 16 27 C -0.03 -0.69 9.52 22.27 0.21 -0.48 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.11 8.10 -2.38 -0.02 1.09 16 31 H 0.43 5.29 8.96 -96.75 -0.87 4.42 16 32 H 0.15 3.31 7.61 -2.91 -0.02 3.29 16 33 H 0.14 3.51 7.52 -2.91 -0.02 3.49 16 34 H 0.07 1.31 6.07 -2.39 -0.01 1.30 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.23 8.01 -2.39 -0.02 1.21 16 37 H 0.34 9.96 7.56 -89.70 -0.68 9.29 16 38 H 0.05 1.56 8.01 -2.39 -0.02 1.54 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.65 6.07 -2.39 -0.01 1.63 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 43 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.15 3.00 8.04 -2.91 -0.02 2.98 16 45 H 0.15 3.06 7.62 -2.91 -0.02 3.03 16 Total: -1.00 -73.58 380.74 -1.96 -75.54 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.54 Total: 22.51 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 4.67 Total: -47.16 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -3.41 Total: -101.07 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -4.39 Total: -58.42 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 62.47 SS G_CDS: -0.32 Total: 62.15 kcal Total: -73.58 -1.96 -75.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299521443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.428 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds