Wall clock time and date at job start Tue Mar 31 2020 15:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65600 * 120.00087 * 2 1 4 4 O 1.42106 * 106.39866 * 311.46309 * 3 2 1 5 5 O 1.42091 * 106.40734 * 178.54305 * 3 2 1 6 6 C 1.76199 * 107.21552 * 64.99824 * 3 2 1 7 7 C 1.38233 * 119.99566 * 90.00470 * 6 3 2 8 8 C 1.38239 * 119.99727 * 179.97438 * 7 6 3 9 9 C 1.38234 * 120.00294 * 359.95529 * 8 7 6 10 10 C 1.50696 * 120.00247 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47204 * 19.99348 * 10 9 8 12 12 C 1.53006 * 109.47034 * 260.00111 * 10 9 8 13 13 N 1.46897 * 109.47236 * 140.00243 * 10 9 8 14 14 C 1.46905 * 111.00060 * 205.00025 * 13 10 9 15 15 H 1.09004 * 109.46681 * 324.99913 * 14 13 10 16 16 C 1.52997 * 109.47170 * 84.99377 * 14 13 10 17 17 C 1.52997 * 109.47150 * 204.99892 * 14 13 10 18 18 C 1.50701 * 109.47212 * 64.99640 * 17 14 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.38233 * 119.99712 * 0.27451 * 9 8 7 27 27 C 1.38230 * 120.00216 * 269.97529 * 6 3 2 28 28 H 1.08998 * 109.46532 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46841 * 299.99647 * 1 2 3 30 30 H 1.08999 * 109.47053 * 60.00479 * 1 2 3 31 31 H 0.97003 * 120.00342 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.00720 * 359.97438 * 7 6 3 33 33 H 1.08003 * 119.99937 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47354 * 59.99593 * 12 10 9 35 35 H 1.08994 * 109.47207 * 180.02562 * 12 10 9 36 36 H 1.09005 * 109.46630 * 300.00129 * 12 10 9 37 37 H 1.00897 * 110.99719 * 328.95106 * 13 10 9 38 38 H 1.09002 * 109.47016 * 180.02562 * 16 14 13 39 39 H 1.09000 * 109.47400 * 300.00439 * 16 14 13 40 40 H 1.09004 * 109.46881 * 60.00659 * 16 14 13 41 41 H 1.09002 * 109.47153 * 304.99641 * 17 14 13 42 42 H 1.09001 * 109.46832 * 184.99832 * 17 14 13 43 43 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.07999 * 119.99989 * 179.72767 * 26 9 8 45 45 H 1.08006 * 120.00212 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1004 0.0347 6 6 1.9378 2.2414 1.5253 7 6 2.7381 2.0156 2.6296 8 6 2.4597 2.6494 3.8262 9 6 1.3816 3.5096 3.9183 10 6 1.0785 4.2009 5.2225 11 1 1.9691 4.1979 5.8509 12 6 -0.0540 3.4632 5.9396 13 7 0.6699 5.5870 4.9587 14 6 0.9332 6.4441 6.1223 15 1 0.7690 5.8750 7.0373 16 6 2.3826 6.9322 6.0787 17 6 -0.0113 7.6474 6.0937 18 6 -1.4325 7.1746 6.2602 19 1 -1.6411 6.1212 6.3754 20 6 -2.4663 8.0869 6.2665 21 7 -3.7064 7.6743 6.4123 22 14 -2.1052 9.9089 6.0679 23 1 -2.1306 10.2643 4.6262 24 1 -3.1342 10.6989 6.7905 25 1 -0.7641 10.2118 6.6290 26 6 0.5785 3.7317 2.8153 27 6 0.8591 3.1010 1.6176 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9501 -0.8400 -0.0004 32 1 3.5809 1.3441 2.5575 33 1 3.0848 2.4727 4.6890 34 1 0.2490 2.4346 6.1354 35 1 -0.2736 3.9634 6.8828 36 1 -0.9447 3.4661 5.3112 37 1 1.1255 5.9474 4.1337 38 1 2.5781 7.5678 6.9424 39 1 3.0555 6.0749 6.0991 40 1 2.5469 7.5014 5.1637 41 1 0.0897 8.1660 5.1402 42 1 0.2428 8.3281 6.9062 43 1 -4.4338 8.3160 6.4164 44 1 -0.2665 4.4004 2.8884 45 1 0.2338 3.2775 0.7548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299521445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:41 Heat of formation + Delta-G solvation = -52.926440 kcal Electronic energy + Delta-G solvation = -25705.354293 eV Core-core repulsion = 22042.554367 eV Total energy + Delta-G solvation = -3662.799926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.75303 -37.45613 -37.15769 -36.06715 -35.31357 -33.80063 -32.16198 -31.18585 -29.92687 -28.33923 -27.51817 -26.33136 -24.09552 -23.03386 -22.63352 -20.57031 -19.78438 -19.67144 -18.27348 -17.76184 -16.66547 -16.55339 -16.01571 -15.85693 -14.95418 -14.71603 -14.47114 -14.21661 -14.08725 -14.05194 -13.61029 -13.38214 -13.18533 -13.07114 -12.80078 -12.50732 -12.31490 -12.29396 -12.22701 -11.92874 -11.84291 -11.79247 -11.69539 -11.43389 -11.27977 -11.06403 -10.73850 -10.66852 -10.13129 -9.95819 -9.84256 -9.63263 -9.25434 -9.12624 -9.04897 -8.43743 -7.77423 -5.92678 -3.86444 0.15789 0.67877 1.21160 2.75611 3.33136 3.35469 3.43118 3.45138 3.59754 4.13494 4.42342 4.53519 4.67465 4.68039 4.75335 4.77596 5.10979 5.22668 5.25708 5.38023 5.41018 5.41623 5.46466 5.54098 5.57230 5.69310 5.71153 5.81396 5.83655 5.95742 6.00406 6.06733 6.23540 6.29538 6.42863 6.48063 6.55280 6.63331 6.75682 6.78558 7.14270 7.25701 7.71725 7.85615 7.98663 8.70125 9.18438 9.70861 11.21221 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002798 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.021862 B =10005.836876 C =10449.718885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.122 6.122 3 S 2.699 3.301 4 O -0.957 6.957 5 O -0.963 6.963 6 C -0.685 4.685 7 C -0.023 4.023 8 C -0.139 4.139 9 C -0.021 4.021 10 C 0.116 3.884 11 H 0.048 0.952 12 C -0.133 4.133 13 N -0.655 5.655 14 C 0.098 3.902 15 H 0.072 0.928 16 C -0.184 4.184 17 C -0.004 4.004 18 C -0.489 4.489 19 H 0.078 0.922 20 C 0.061 3.939 21 N -0.909 5.909 22 Si 0.874 3.126 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.269 1.269 26 C -0.118 4.118 27 C -0.024 4.024 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.333 0.667 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.011 0.989 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.149 0.851 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.017 -16.749 -9.306 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.789 3.211 4 O -0.947 6.947 5 O -0.954 6.954 6 C -0.773 4.773 7 C -0.042 4.042 8 C -0.159 4.159 9 C -0.021 4.021 10 C 0.006 3.994 11 H 0.066 0.934 12 C -0.190 4.190 13 N -0.286 5.286 14 C -0.011 4.011 15 H 0.091 0.909 16 C -0.243 4.243 17 C -0.041 4.041 18 C -0.527 4.527 19 H 0.096 0.904 20 C -0.139 4.139 21 N -0.549 5.549 22 Si 0.702 3.298 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.194 1.194 26 C -0.137 4.137 27 C -0.043 4.043 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.167 0.833 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.566 -16.316 -9.790 22.266 hybrid contribution 0.899 0.877 0.625 1.402 sum 12.464 -15.439 -9.165 21.857 Atomic orbital electron populations 1.21521 0.78257 1.04289 1.02363 1.55321 1.16311 1.24333 1.92167 1.01699 0.72745 0.72652 0.74025 1.93592 1.78655 1.68317 1.54135 1.93581 1.30931 1.83499 1.87359 1.30697 1.08187 1.17031 1.21347 1.20787 0.96133 0.96009 0.91281 1.21180 0.98200 0.98478 0.98010 1.20531 0.92546 0.93367 0.95701 1.20612 0.97155 0.90297 0.91367 0.93394 1.21774 0.98122 0.97774 1.01366 1.60679 1.62471 0.99468 1.05962 1.21615 0.91559 0.95389 0.92546 0.90931 1.22606 0.99055 1.00622 1.02010 1.19602 0.95902 0.92564 0.96067 1.21031 0.88427 0.95742 1.47497 0.90368 1.25007 0.95161 0.98246 0.95450 1.69906 0.98801 1.34155 1.52066 0.86884 0.78002 0.86611 0.78283 1.20591 1.21748 1.19402 1.21416 1.00548 0.99975 0.91729 1.20989 0.93297 0.91691 0.98315 0.89914 0.91852 0.91208 0.74875 0.84610 0.85304 0.93519 0.91343 0.91383 0.84842 0.92334 0.94067 0.93001 0.97044 0.96539 0.93100 0.83292 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 11.14 59.85 0.67 1.13 16 2 N -1.12 -7.59 6.19 -16.63 -0.10 -7.69 16 3 S 2.70 27.62 5.74 -107.50 -0.62 27.01 16 4 O -0.96 -12.59 17.01 -57.17 -0.97 -13.56 16 5 O -0.96 -12.08 17.28 -57.17 -0.99 -13.06 16 6 C -0.68 -7.49 5.95 -39.59 -0.24 -7.73 16 7 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 8 C -0.14 -1.55 9.67 -39.58 -0.38 -1.93 16 9 C -0.02 -0.26 4.71 -104.63 -0.49 -0.76 16 10 C 0.12 1.62 2.63 -68.87 -0.18 1.44 16 11 H 0.05 0.64 6.98 -51.93 -0.36 0.27 16 12 C -0.13 -1.95 9.38 37.16 0.35 -1.60 16 13 N -0.66 -11.02 5.16 -100.95 -0.52 -11.54 16 14 C 0.10 1.79 2.34 -67.71 -0.16 1.63 16 15 H 0.07 1.37 7.11 -51.93 -0.37 1.00 16 16 C -0.18 -2.77 9.15 37.16 0.34 -2.43 16 17 C 0.00 -0.08 3.72 -27.88 -0.10 -0.19 16 18 C -0.49 -13.36 9.39 -34.44 -0.32 -13.68 16 19 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 20 C 0.06 1.74 5.47 -17.82 -0.10 1.65 16 21 N -0.91 -27.80 13.96 55.43 0.77 -27.03 16 22 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.27 -6.40 6.54 56.52 0.37 -6.04 16 26 C -0.12 -1.52 9.01 -39.58 -0.36 -1.88 16 27 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.42 1.92 8.96 -34.47 -0.31 1.61 16 32 H 0.14 1.19 7.62 -52.49 -0.40 0.79 16 33 H 0.13 1.18 8.04 -52.48 -0.42 0.76 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.12 7.43 -51.93 -0.39 0.74 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.33 5.31 7.74 -39.29 -0.30 5.01 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 40 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.15 2.08 7.73 -52.49 -0.41 1.67 16 45 H 0.14 1.42 7.62 -52.48 -0.40 1.02 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -34.62 379.80 -10.16 -44.78 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.05 Total: 3.97 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -1.73 Total: -25.61 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.15 Total: -46.26 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.96 Total: -26.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 27.62 SS G_CDS: -0.62 Total: 27.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.62 -10.16 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299521445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.147 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds