Wall clock time and date at job start Tue Mar 31 2020 15:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65597 * 119.99791 * 2 1 4 4 O 1.42102 * 106.40060 * 178.54054 * 3 2 1 5 5 O 1.42101 * 106.40207 * 311.45359 * 3 2 1 6 6 C 1.76196 * 107.22133 * 64.99502 * 3 2 1 7 7 C 1.38229 * 120.00286 * 269.72854 * 6 3 2 8 8 C 1.38232 * 120.00221 * 179.74358 * 7 6 3 9 9 C 1.38238 * 119.99895 * 0.53140 * 8 7 6 10 10 C 1.50700 * 120.00224 * 179.77080 * 9 8 7 11 11 H 1.09000 * 109.47278 * 159.97091 * 10 9 8 12 12 C 1.53000 * 109.47104 * 279.97623 * 10 9 8 13 13 N 1.46901 * 109.47167 * 39.97199 * 10 9 8 14 14 C 1.46904 * 111.00022 * 155.00322 * 13 10 9 15 15 H 1.08998 * 109.47161 * 34.99808 * 14 13 10 16 16 C 1.53004 * 109.46984 * 275.00236 * 14 13 10 17 17 C 1.52992 * 109.47040 * 155.00085 * 14 13 10 18 18 C 1.50701 * 109.47290 * 294.99785 * 17 14 13 19 19 H 1.07999 * 119.99670 * 0.02562 * 18 17 14 20 20 C 1.37875 * 120.00173 * 180.02562 * 18 17 14 21 21 N 1.31508 * 120.00149 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00020 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47328 * 89.99575 * 22 20 18 24 24 H 1.48501 * 109.47366 * 210.00224 * 22 20 18 25 25 H 1.48507 * 109.47164 * 329.99938 * 22 20 18 26 26 C 1.38230 * 119.99714 * 359.74064 * 9 8 7 27 27 C 1.38234 * 120.00464 * 359.97438 * 26 9 8 28 28 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47212 * 300.00385 * 1 2 3 30 30 H 1.09001 * 109.46577 * 60.00460 * 1 2 3 31 31 H 0.96995 * 120.00050 * 179.72084 * 2 1 3 32 32 H 1.08006 * 119.99944 * 359.97438 * 7 6 3 33 33 H 1.08007 * 120.00313 * 180.29334 * 8 7 6 34 34 H 1.09000 * 109.47488 * 59.99596 * 12 10 9 35 35 H 1.08998 * 109.47355 * 180.02562 * 12 10 9 36 36 H 1.09010 * 109.46584 * 299.99896 * 12 10 9 37 37 H 1.00904 * 111.00014 * 31.04947 * 13 10 9 38 38 H 1.09002 * 109.47230 * 59.99604 * 16 14 13 39 39 H 1.08997 * 109.47222 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.46823 * 299.99779 * 16 14 13 41 41 H 1.09004 * 109.47354 * 55.00352 * 17 14 13 42 42 H 1.09001 * 109.47028 * 174.99669 * 17 14 13 43 43 H 0.97009 * 120.00109 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.00058 * 179.97438 * 26 9 8 45 45 H 1.08003 * 120.00327 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7121 2.2328 -1.0217 6 6 1.9377 2.2416 1.5252 7 6 0.8621 3.1051 1.6161 8 6 0.5803 3.7344 2.8141 9 6 1.3806 3.5088 3.9184 10 6 1.0764 4.1989 5.2231 11 1 1.5549 3.6588 6.0401 12 6 1.6092 5.6324 5.1782 13 7 -0.3768 4.2232 5.4371 14 6 -0.6968 4.3200 6.8676 15 1 0.0498 4.9385 7.3658 16 6 -0.6951 2.9207 7.4864 17 6 -2.0794 4.9520 7.0392 18 6 -2.0473 6.3738 6.5408 19 1 -1.1323 6.7854 6.1412 20 6 -3.1861 7.1493 6.5950 21 7 -3.1579 8.3902 6.1605 22 14 -4.7686 6.4376 7.2869 23 1 -4.8270 6.6897 8.7492 24 1 -5.9318 7.0827 6.6265 25 1 -4.8052 4.9745 7.0350 26 6 2.4595 2.6496 3.8261 27 6 2.7379 2.0157 2.6296 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.9500 -0.8400 0.0041 32 1 0.2397 3.2851 0.7519 33 1 -0.2630 4.4055 2.8863 34 1 1.1307 6.1725 4.3612 35 1 1.3896 6.1314 6.1220 36 1 2.6875 5.6143 5.0194 37 1 -0.8170 3.4157 5.0219 38 1 0.2900 2.4705 7.3640 39 1 -0.9330 2.9925 8.5476 40 1 -1.4417 2.3023 6.9881 41 1 -2.8126 4.3830 6.4674 42 1 -2.3547 4.9428 8.0938 43 1 -3.9593 8.9356 6.1983 44 1 3.0850 2.4736 4.6887 45 1 3.5811 1.3447 2.5574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299521447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:44 Heat of formation + Delta-G solvation = -52.832490 kcal Electronic energy + Delta-G solvation = -25738.424138 eV Core-core repulsion = 22075.628286 eV Total energy + Delta-G solvation = -3662.795852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.75432 -37.45461 -37.16771 -36.06563 -35.31905 -33.80472 -32.16750 -31.18658 -29.92847 -28.34147 -27.53341 -26.33789 -24.09469 -23.03608 -22.64124 -20.56929 -19.79164 -19.68240 -18.27717 -17.75839 -16.67164 -16.55755 -16.01899 -15.85690 -14.95518 -14.72567 -14.44635 -14.26869 -14.13583 -13.97001 -13.62579 -13.41539 -13.19269 -13.07333 -12.78541 -12.48866 -12.32352 -12.30701 -12.22624 -11.93222 -11.89667 -11.78476 -11.71069 -11.42807 -11.23720 -11.06663 -10.72037 -10.65073 -10.29143 -9.96358 -9.77740 -9.63480 -9.25629 -9.12602 -9.05128 -8.44494 -7.78423 -5.92822 -3.86857 0.15769 0.67774 1.21197 2.75500 3.32961 3.33783 3.42002 3.43953 3.59766 4.13429 4.41728 4.52581 4.66949 4.67885 4.74834 4.77704 5.09974 5.22586 5.25619 5.37376 5.40156 5.41184 5.46178 5.52966 5.56581 5.68443 5.69956 5.79750 5.83800 5.95915 6.00837 6.07497 6.23467 6.30069 6.40330 6.48010 6.54839 6.64769 6.75408 6.78315 7.10290 7.26289 7.70337 7.84967 7.97865 8.69763 9.18588 9.70376 11.21066 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.002832 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.829081 B = 9883.978964 C =10244.964158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.122 6.122 3 S 2.699 3.301 4 O -0.963 6.963 5 O -0.957 6.957 6 C -0.685 4.685 7 C -0.023 4.023 8 C -0.118 4.118 9 C -0.021 4.021 10 C 0.116 3.884 11 H 0.048 0.952 12 C -0.134 4.134 13 N -0.654 5.654 14 C 0.098 3.902 15 H 0.072 0.928 16 C -0.183 4.183 17 C -0.003 4.003 18 C -0.489 4.489 19 H 0.078 0.922 20 C 0.061 3.939 21 N -0.908 5.908 22 Si 0.874 3.126 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.269 1.269 26 C -0.139 4.139 27 C -0.023 4.023 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.417 0.583 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.332 0.668 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.129 0.871 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -19.060 -8.536 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.789 3.211 4 O -0.953 6.953 5 O -0.947 6.947 6 C -0.773 4.773 7 C -0.043 4.043 8 C -0.137 4.137 9 C -0.021 4.021 10 C 0.006 3.994 11 H 0.066 0.934 12 C -0.191 4.191 13 N -0.285 5.285 14 C -0.011 4.011 15 H 0.091 0.909 16 C -0.242 4.242 17 C -0.041 4.041 18 C -0.528 4.528 19 H 0.096 0.904 20 C -0.139 4.139 21 N -0.548 5.548 22 Si 0.702 3.298 23 H -0.207 1.207 24 H -0.217 1.217 25 H -0.194 1.194 26 C -0.159 4.159 27 C -0.042 4.042 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.151 0.849 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.069 0.931 44 H 0.147 0.853 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.463 -17.743 -9.340 22.617 hybrid contribution -0.891 -1.451 1.496 2.267 sum 9.572 -19.195 -7.844 22.838 Atomic orbital electron populations 1.21521 0.78278 1.04268 1.02358 1.55329 1.16301 1.24338 1.92162 1.01707 0.72756 0.72641 0.74028 1.93583 1.30912 1.83493 1.87358 1.93591 1.78659 1.68301 1.54118 1.30701 1.08256 1.17001 1.21322 1.20987 0.93295 0.91691 0.98312 1.21416 1.00677 0.99975 0.91613 1.20533 0.93041 0.92470 0.96099 1.20612 0.90986 0.96237 0.91540 0.93403 1.21782 0.98632 0.94684 1.04040 1.60662 1.05767 1.46625 1.15446 1.21612 1.00563 0.93073 0.85889 0.90937 1.22603 1.00162 0.99541 1.01937 1.19591 0.91399 0.97376 0.95715 1.21034 0.98269 0.94156 1.39313 0.90352 1.25011 0.98491 0.94785 0.95576 1.69907 1.28765 1.07747 1.48428 0.86891 0.84068 0.79658 0.79183 1.20717 1.21675 1.19365 1.21179 0.98276 0.98290 0.98129 1.20789 0.96082 0.96089 0.91249 0.89937 0.91887 0.91183 0.74884 0.84280 0.83282 0.91333 0.91330 0.93454 0.84937 0.94076 0.92343 0.93055 0.96636 0.97012 0.93082 0.85303 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.14 59.85 0.67 1.13 16 2 N -1.12 -7.56 6.19 -16.63 -0.10 -7.66 16 3 S 2.70 27.60 5.74 -107.50 -0.62 26.98 16 4 O -0.96 -12.07 17.28 -57.17 -0.99 -13.06 16 5 O -0.96 -12.58 17.00 -57.17 -0.97 -13.56 16 6 C -0.68 -7.49 5.95 -39.58 -0.24 -7.72 16 7 C -0.02 -0.27 9.52 -39.59 -0.38 -0.65 16 8 C -0.12 -1.52 9.01 -39.58 -0.36 -1.88 16 9 C -0.02 -0.26 4.71 -104.62 -0.49 -0.76 16 10 C 0.12 1.63 2.63 -68.86 -0.18 1.45 16 11 H 0.05 0.63 6.98 -51.93 -0.36 0.27 16 12 C -0.13 -2.03 9.38 37.16 0.35 -1.68 16 13 N -0.65 -10.82 5.16 -100.95 -0.52 -11.34 16 14 C 0.10 1.76 2.34 -67.71 -0.16 1.60 16 15 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 16 C -0.18 -2.67 9.15 37.16 0.34 -2.33 16 17 C 0.00 -0.07 3.72 -27.89 -0.10 -0.17 16 18 C -0.49 -13.34 9.39 -34.44 -0.32 -13.66 16 19 H 0.08 2.31 7.99 -52.49 -0.42 1.90 16 20 C 0.06 1.74 5.47 -17.82 -0.10 1.65 16 21 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 22 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 26 C -0.14 -1.55 9.67 -39.59 -0.38 -1.93 16 27 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.42 1.91 8.96 -34.47 -0.31 1.60 16 32 H 0.14 1.42 7.61 -52.48 -0.40 1.02 16 33 H 0.15 2.08 7.72 -52.48 -0.41 1.67 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.14 7.43 -51.93 -0.39 0.76 16 36 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.33 5.09 7.73 -39.29 -0.30 4.78 16 38 H 0.04 0.52 7.43 -51.93 -0.39 0.14 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.13 1.18 8.04 -52.48 -0.42 0.76 16 45 H 0.14 1.19 7.62 -52.48 -0.40 0.79 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -34.62 379.77 -10.16 -44.78 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.05 Total: 3.92 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -1.73 Total: -25.58 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.15 Total: -46.04 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.96 Total: -26.61 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 27.60 SS G_CDS: -0.62 Total: 26.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.62 -10.16 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299521447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.054 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds