Wall clock time and date at job start Tue Mar 31 2020 15:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 S 1.65600 * 119.99915 * 240.00242 * 12 2 1 15 15 O 1.42101 * 106.39901 * 203.53726 * 14 12 2 16 16 O 1.42096 * 106.40513 * 336.45952 * 14 12 2 17 17 N 1.65595 * 107.21978 * 90.00190 * 14 12 2 18 18 C 1.46497 * 120.00400 * 64.99328 * 17 14 12 19 19 C 1.52996 * 109.47713 * 165.00175 * 18 17 14 20 20 C 1.53001 * 109.47752 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47324 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.00247 * 269.72615 * 21 20 19 23 23 C 1.38238 * 119.99997 * 179.76583 * 22 21 20 24 24 C 1.38231 * 120.00061 * 0.50785 * 23 22 21 25 25 C 1.38238 * 119.99611 * 359.74740 * 24 23 22 26 26 C 1.38234 * 120.00584 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 28 28 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 32 32 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 33 33 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 34 34 H 0.96999 * 120.00264 * 245.00142 * 17 14 12 35 35 H 1.09000 * 109.47562 * 285.00952 * 18 17 14 36 36 H 1.09004 * 109.46835 * 45.00073 * 18 17 14 37 37 H 1.09004 * 109.46896 * 300.00314 * 19 18 17 38 38 H 1.09004 * 109.47053 * 60.00032 * 19 18 17 39 39 H 1.08997 * 109.46608 * 300.00566 * 20 19 18 40 40 H 1.09004 * 109.46588 * 60.00051 * 20 19 18 41 41 H 1.07999 * 120.00166 * 0.02562 * 22 21 20 42 42 H 1.07996 * 119.99770 * 180.23052 * 23 22 21 43 43 H 1.07993 * 120.00384 * 179.72675 * 24 23 22 44 44 H 1.08005 * 120.00020 * 179.97438 * 25 24 23 45 45 H 1.07993 * 120.00319 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8091 3.3998 18 6 1.1508 -0.0351 4.2817 19 6 0.6085 0.8076 5.4378 20 6 -0.2368 -0.0741 6.3591 21 6 -0.7704 0.7558 7.4981 22 6 -0.0436 0.8725 8.6681 23 6 -0.5309 1.6378 9.7111 24 6 -1.7499 2.2779 9.5880 25 6 -2.4791 2.1569 8.4199 26 6 -1.9892 1.3963 7.3748 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.9028 -0.5285 -4.4375 31 1 2.4157 -2.7377 0.9718 32 1 1.6237 -2.2852 2.5003 33 1 0.6904 -2.3002 0.9847 34 1 1.9053 1.7751 3.4682 35 1 0.3187 -0.4566 3.7177 36 1 1.7668 -0.8422 4.6782 37 1 1.4407 1.2291 6.0018 38 1 -0.0075 1.6148 5.0413 39 1 -1.0688 -0.4959 5.7953 40 1 0.3796 -0.8810 6.7556 41 1 0.9069 0.3692 8.7659 42 1 0.0387 1.7319 10.6238 43 1 -2.1326 2.8722 10.4045 44 1 -3.4318 2.6567 8.3238 45 1 -2.5592 1.3015 6.4624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337821166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:04 Heat of formation + Delta-G solvation = -55.539690 kcal Electronic energy + Delta-G solvation = -25658.003629 eV Core-core repulsion = 21995.090384 eV Total energy + Delta-G solvation = -3662.913245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.61534 -36.86806 -36.52930 -36.25931 -35.31847 -33.56796 -32.50094 -31.17989 -30.05448 -29.95399 -25.86947 -25.65299 -25.00506 -22.86845 -22.40408 -21.20866 -20.86286 -18.81969 -17.38690 -17.12504 -17.11466 -16.44927 -16.09120 -15.81994 -15.47125 -15.07854 -14.81536 -14.47036 -13.73555 -13.70168 -13.65078 -13.37703 -13.28262 -12.83143 -12.78302 -12.50115 -12.31097 -12.18320 -11.98468 -11.81275 -11.60425 -11.57950 -11.48452 -11.44266 -11.21016 -11.09575 -11.01740 -10.92622 -10.47737 -10.16429 -9.63287 -9.41387 -9.38590 -9.21765 -8.98136 -8.63990 -8.13036 -6.12824 -4.13256 1.02245 1.10379 1.12444 3.21181 3.32975 3.35685 3.37203 3.50497 4.02344 4.34190 4.37355 4.51809 4.69818 4.79634 4.80960 4.85525 4.96404 5.04059 5.15995 5.17935 5.22075 5.38968 5.40407 5.43306 5.52343 5.73097 5.75639 5.81812 5.89576 5.99423 6.08710 6.17101 6.18061 6.22014 6.23026 6.31216 6.35587 6.47488 6.56122 6.71489 6.78755 7.04153 7.28630 7.41596 7.62945 8.46902 8.91737 9.47003 11.00204 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.002803 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.506191 B = 9988.490365 C =10739.939933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.057 0.943 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.294 1.294 12 N -0.984 5.984 13 C 0.108 3.892 14 S 2.782 3.218 15 O -0.990 6.990 16 O -0.975 6.975 17 N -1.135 6.135 18 C 0.119 3.881 19 C -0.119 4.119 20 C -0.082 4.082 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 3.724 24.283 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.189 1.189 11 H -0.221 1.221 12 N -0.826 5.826 13 C -0.038 4.038 14 S 2.790 3.210 15 O -0.974 6.974 16 O -0.959 6.959 17 N -0.894 5.894 18 C -0.008 4.008 19 C -0.158 4.158 20 C -0.120 4.120 21 C -0.079 4.079 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.589 3.545 24.063 25.795 hybrid contribution -1.152 1.204 -0.250 1.685 sum -9.742 4.749 23.814 26.164 Atomic orbital electron populations 1.22491 0.99183 1.01402 0.99039 1.19075 0.90310 0.93633 0.83475 0.92554 1.21163 1.32483 1.14268 0.88194 0.89989 1.24915 0.95771 0.96552 0.95720 1.69876 1.45204 1.40157 0.97949 0.86945 0.80429 0.83876 0.77518 1.20426 1.18936 1.22113 1.57426 1.70090 1.20022 1.35053 1.21214 1.02019 0.81775 0.98821 1.01893 0.73512 0.73153 0.72413 1.93550 1.68778 1.60691 1.74344 1.93611 1.74253 1.56028 1.71969 1.56222 1.62726 1.17396 1.53059 1.21238 0.94905 0.93450 0.91173 1.21755 0.99808 0.98556 0.95704 1.20593 0.99981 0.97193 0.94263 1.19914 0.94685 0.97992 0.95270 1.21106 0.99859 0.99383 0.93218 1.21158 0.96244 0.97486 0.98859 1.21149 0.95332 1.00172 0.97929 1.21165 0.99897 0.98986 0.93691 1.21107 0.95866 0.97578 0.98972 0.93270 0.92167 0.94870 0.92456 0.92718 0.93116 0.90907 0.75535 0.91686 0.90544 0.91000 0.91033 0.90398 0.90416 0.85979 0.86172 0.86297 0.86163 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.65 37.16 0.32 -2.90 16 2 C 0.24 5.48 2.21 -69.08 -0.15 5.33 16 3 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 4 C -0.52 -14.32 8.95 -34.44 -0.31 -14.63 16 5 H 0.08 2.44 7.89 -52.49 -0.41 2.03 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 8 Si 0.88 21.34 24.37 -169.99 -4.14 17.20 16 9 H -0.28 -6.37 6.87 56.52 0.39 -5.98 16 10 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 N -0.98 -19.24 3.12 -115.84 -0.36 -19.60 16 13 C 0.11 1.81 9.53 59.85 0.57 2.38 16 14 S 2.78 51.46 6.09 -107.50 -0.66 50.81 16 15 O -0.99 -19.75 16.68 -57.17 -0.95 -20.70 16 16 O -0.97 -21.71 16.70 -57.17 -0.95 -22.67 16 17 N -1.13 -15.01 6.05 -10.61 -0.06 -15.07 16 18 C 0.12 1.26 6.25 -4.04 -0.03 1.23 16 19 C -0.12 -1.01 5.34 -26.73 -0.14 -1.15 16 20 C -0.08 -0.61 5.35 -27.88 -0.15 -0.76 16 21 C -0.08 -0.65 5.13 -104.63 -0.54 -1.19 16 22 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 27 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 28 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 33 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 34 H 0.41 4.72 8.65 -34.47 -0.30 4.42 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -34.37 373.78 -10.14 -44.51 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.93 Total: 2.39 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.48 Total: -16.37 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.35 Total: -60.80 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.91 Total: -43.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Atomic # 16 Polarization: 51.46 SS G_CDS: -0.66 Total: 50.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.37 -10.14 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337821166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.030 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds