Wall clock time and date at job start Tue Mar 31 2020 15:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.53001 * 109.46682 * 165.00196 * 18 17 14 20 20 C 1.53008 * 109.46875 * 180.02562 * 19 18 17 21 21 C 1.50694 * 109.47240 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99926 * 269.72272 * 21 20 19 23 23 C 1.38239 * 120.00195 * 179.76285 * 22 21 20 24 24 C 1.38235 * 119.99324 * 0.51063 * 23 22 21 25 25 C 1.38230 * 120.00617 * 359.74873 * 24 23 22 26 26 C 1.38232 * 120.00034 * 89.99922 * 21 20 19 27 27 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 28 28 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 29 29 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 30 30 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 31 31 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 32 32 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 33 33 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 34 34 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 35 35 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 36 36 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 37 37 H 1.08997 * 109.47413 * 299.99887 * 19 18 17 38 38 H 1.08994 * 109.47046 * 60.00543 * 19 18 17 39 39 H 1.09003 * 109.46780 * 300.00386 * 20 19 18 40 40 H 1.08999 * 109.47246 * 59.99763 * 20 19 18 41 41 H 1.08007 * 120.00036 * 0.02562 * 22 21 20 42 42 H 1.07997 * 120.00133 * 180.23089 * 23 22 21 43 43 H 1.08003 * 119.99841 * 179.71807 * 24 23 22 44 44 H 1.07997 * 120.00361 * 179.97438 * 25 24 23 45 45 H 1.08005 * 120.00312 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6576 -1.3311 -1.7338 20 6 7.2760 -2.7304 -1.7590 21 6 8.7750 -2.6193 -1.6520 22 6 9.5438 -2.5168 -2.7962 23 6 10.9186 -2.4099 -2.6980 24 6 11.5252 -2.4160 -1.4558 25 6 10.7568 -2.5239 -0.3118 26 6 9.3816 -2.6255 -0.4099 27 1 -0.3634 0.4065 0.9439 28 1 -0.3634 0.6142 -0.8239 29 1 -0.3634 -1.0206 -0.1200 30 1 1.9114 -1.9121 3.4376 31 1 0.7375 -2.1443 -1.9995 32 1 2.4627 -2.5818 -1.9866 33 1 1.5294 -2.5969 -0.4711 34 1 5.0733 0.6550 -1.5283 35 1 4.7539 -2.0248 -1.0020 36 1 4.8735 -1.9407 -2.7760 37 1 7.0394 -0.7505 -2.5735 38 1 6.9197 -0.8345 -0.7996 39 1 6.8942 -3.3115 -0.9194 40 1 7.0138 -3.2267 -2.6933 41 1 9.0702 -2.5160 -3.7669 42 1 11.5189 -2.3261 -3.5918 43 1 12.5996 -2.3371 -1.3792 44 1 11.2308 -2.5291 0.6586 45 1 8.7813 -2.7104 0.4839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337821169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:07 Heat of formation + Delta-G solvation = -66.432090 kcal Electronic energy + Delta-G solvation = -25827.933369 eV Core-core repulsion = 22164.547795 eV Total energy + Delta-G solvation = -3663.385575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.49693 -36.86839 -36.41577 -36.16853 -35.36850 -33.43577 -32.62769 -31.06510 -29.83248 -29.80882 -25.78056 -25.49831 -24.68875 -22.75280 -22.26077 -21.05760 -20.63037 -18.79992 -17.58782 -17.18885 -17.00591 -16.85449 -16.04815 -15.72110 -15.30586 -14.81704 -14.67495 -13.99861 -13.74267 -13.60811 -13.55036 -13.36125 -13.16391 -12.94310 -12.61387 -12.42514 -12.09222 -12.01859 -11.81319 -11.69236 -11.62313 -11.53523 -11.51625 -11.33112 -11.32065 -10.88450 -10.86604 -10.73365 -10.46955 -10.06880 -9.81770 -9.32344 -9.19778 -9.10388 -8.86480 -8.43968 -8.07588 -6.54972 -4.17359 1.11267 1.20714 1.21688 3.37133 3.37759 3.43971 3.58388 3.61197 4.03846 4.43130 4.50704 4.64253 4.80115 4.86545 4.93466 4.95466 5.09972 5.10813 5.16114 5.30154 5.33891 5.45903 5.52085 5.58516 5.67009 5.85808 5.88191 5.95076 6.03734 6.07568 6.14421 6.25078 6.28653 6.32977 6.39702 6.47952 6.48452 6.57176 6.67177 6.82937 6.97460 7.20076 7.31196 7.51391 7.94835 8.28271 8.81077 9.47886 10.80199 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.003327 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.245277 B = 8414.610528 C = 9621.813875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.616 4.616 5 H 0.066 0.934 6 C 0.043 3.957 7 N -0.893 5.893 8 Si 1.024 2.976 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.985 5.985 13 C 0.106 3.894 14 S 2.784 3.216 15 O -0.996 6.996 16 O -0.985 6.985 17 N -1.127 6.127 18 C 0.121 3.879 19 C -0.118 4.118 20 C -0.082 4.082 21 C -0.077 4.077 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.116 4.116 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.049 0.951 30 H 0.270 0.730 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.413 0.587 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 -4.273 -10.207 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.654 4.654 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.525 5.525 8 Si 0.851 3.149 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.827 5.827 13 C -0.040 4.040 14 S 2.792 3.208 15 O -0.979 6.979 16 O -0.969 6.969 17 N -0.886 5.886 18 C -0.005 4.005 19 C -0.157 4.157 20 C -0.120 4.120 21 C -0.077 4.077 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.134 4.134 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.269 -2.771 -9.910 16.791 hybrid contribution 0.742 -1.154 -0.533 1.472 sum 14.011 -3.926 -10.443 17.910 Atomic orbital electron populations 1.22391 0.98418 1.00448 1.00042 1.18946 0.91333 0.92784 0.82738 0.93570 1.22133 1.41251 1.11293 0.90773 0.91631 1.25596 0.93266 1.05553 0.92010 1.70863 1.43390 1.06387 1.31882 0.84331 0.77897 0.76239 0.76436 1.20824 1.20529 1.19907 1.57491 1.64711 1.21410 1.39079 1.21222 0.99074 0.81787 1.01939 1.01745 0.72662 0.73015 0.73354 1.93545 1.86054 1.76313 1.42031 1.93578 1.83799 1.32589 1.86939 1.55949 1.32164 1.15115 1.85405 1.21217 0.93869 0.83548 1.01893 1.21739 0.93891 0.96833 1.03276 1.20594 0.90518 0.97428 1.03499 1.19917 0.95677 0.98915 0.93195 1.21091 0.93816 1.00558 0.98195 1.21139 0.94843 1.00311 0.97577 1.21137 0.99758 1.01014 0.92753 1.21170 0.94024 0.99964 0.98528 1.21151 0.94818 1.00103 0.97344 0.92080 0.95445 0.93183 0.92024 0.93774 0.93053 0.90096 0.75419 0.91372 0.90921 0.91181 0.90830 0.90321 0.90563 0.86063 0.86244 0.86338 0.86130 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.01 37.16 0.33 -2.99 16 2 C 0.25 5.68 2.22 -69.08 -0.15 5.53 16 3 H 0.05 1.12 5.49 -51.93 -0.29 0.84 16 4 C -0.62 -15.80 8.30 -34.44 -0.29 -16.08 16 5 H 0.07 1.76 7.38 -52.48 -0.39 1.37 16 6 C 0.04 1.17 5.20 -17.82 -0.09 1.08 16 7 N -0.89 -25.65 13.70 55.43 0.76 -24.89 16 8 Si 1.02 24.20 26.44 -169.99 -4.49 19.71 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.06 6.12 56.52 0.35 -5.72 16 12 N -0.99 -19.64 3.12 -115.86 -0.36 -20.00 16 13 C 0.11 1.83 9.15 59.85 0.55 2.38 16 14 S 2.78 52.56 6.09 -107.50 -0.66 51.91 16 15 O -1.00 -19.69 16.68 -57.17 -0.95 -20.64 16 16 O -0.98 -21.39 16.70 -57.17 -0.95 -22.35 16 17 N -1.13 -17.32 6.05 -10.61 -0.06 -17.38 16 18 C 0.12 1.59 6.25 -4.04 -0.03 1.56 16 19 C -0.12 -1.28 5.34 -26.73 -0.14 -1.43 16 20 C -0.08 -0.79 5.35 -27.88 -0.15 -0.94 16 21 C -0.08 -0.78 5.13 -104.63 -0.54 -1.32 16 22 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.13 -1.13 10.05 -39.59 -0.40 -1.53 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 27 H 0.06 1.36 5.44 -51.93 -0.28 1.08 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.02 7.45 -51.93 -0.39 0.63 16 30 H 0.27 7.67 8.73 -40.82 -0.36 7.32 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 33 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 34 H 0.41 5.72 8.65 -34.47 -0.30 5.42 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -31.84 377.38 -10.58 -42.43 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.08 Total: 5.32 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.46 Total: -19.79 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.33 Total: -62.27 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.91 Total: -42.99 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -4.49 Total: 19.71 kcal Atomic # 16 Polarization: 52.56 SS G_CDS: -0.66 Total: 51.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.84 -10.58 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337821169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.004 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds