Wall clock time and date at job start Tue Mar 31 2020 14:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46834 * 2 1 4 4 O 1.42897 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00088 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47279 * 59.99972 * 5 4 3 7 7 N 1.29939 * 126.29085 * 125.02618 * 6 5 4 8 8 O 1.21296 * 110.25472 * 179.97438 * 7 6 5 9 9 C 1.33642 * 109.80886 * 359.97438 * 8 7 6 10 10 C 1.50706 * 126.55145 * 180.02562 * 9 8 7 11 11 S 1.81002 * 109.46835 * 270.01991 * 10 9 8 12 12 C 1.76199 * 99.99964 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99812 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99872 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00177 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47210 * 90.00169 * 16 14 12 18 18 H 1.48511 * 109.46969 * 209.99983 * 16 14 12 19 19 H 1.48494 * 109.47354 * 329.99560 * 16 14 12 20 20 N 1.31133 * 106.89942 * 359.76800 * 9 8 7 21 21 C 1.53000 * 109.47621 * 179.97438 * 5 4 3 22 22 C 1.52997 * 109.47060 * 59.99980 * 21 5 4 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 5 24 24 C 1.53005 * 109.47159 * 300.00546 * 23 22 21 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 23 22 26 26 H 1.09006 * 109.46846 * 60.00836 * 1 2 3 27 27 H 1.09003 * 109.47024 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47608 * 300.00599 * 1 2 3 29 29 H 1.08996 * 109.47886 * 239.99847 * 2 1 3 30 30 H 1.08997 * 109.46761 * 119.99311 * 2 1 3 31 31 H 1.09000 * 109.46910 * 59.99795 * 3 2 1 32 32 H 1.08997 * 109.46884 * 299.99235 * 3 2 1 33 33 H 1.08997 * 109.46976 * 30.01879 * 10 9 8 34 34 H 1.09000 * 109.47010 * 150.02691 * 10 9 8 35 35 H 0.96997 * 120.00005 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47398 * 180.02562 * 21 5 4 37 37 H 1.09001 * 109.47194 * 300.00330 * 21 5 4 38 38 H 1.08996 * 109.47853 * 180.02562 * 22 21 5 39 39 H 1.09002 * 109.47153 * 300.00319 * 22 21 5 40 40 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 42 42 H 1.09002 * 109.46935 * 299.99411 * 24 23 22 43 43 H 1.09001 * 109.46812 * 179.97438 * 24 23 22 44 44 H 1.08993 * 109.47194 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.46695 * 59.99734 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 3.6050 3.4967 1.2299 7 7 4.3783 4.0537 2.1132 8 8 3.7138 4.5773 2.9825 9 6 2.4140 4.3989 2.7283 10 6 1.2603 4.8932 3.5624 11 16 0.8232 3.6384 4.7915 12 6 -0.5110 4.4555 5.6019 13 1 -0.8157 5.4406 5.2810 14 6 -1.1703 3.8330 6.6527 15 7 -2.1668 4.4437 7.2585 16 14 -0.6428 2.1294 7.2082 17 1 0.3976 2.2520 8.2607 18 1 -1.8163 1.4015 7.7547 19 1 -0.0907 1.3802 6.0511 20 7 2.3341 3.7165 1.6114 21 6 5.5754 2.6273 0.0014 22 6 6.0279 1.8671 -1.2468 23 6 5.5775 2.6253 -2.4970 24 6 4.0522 2.7461 -2.4984 25 6 3.5997 3.5063 -1.2501 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.5471 5.8143 4.0698 34 1 0.4022 5.0852 2.9183 35 1 -2.6278 4.0085 7.9926 36 1 6.0187 3.6231 0.0015 37 1 5.8963 2.0870 0.8921 38 1 7.1144 1.7806 -1.2458 39 1 5.5846 0.8713 -1.2464 40 1 5.8994 2.0835 -3.3864 41 1 6.0208 3.6211 -2.4974 42 1 3.6088 1.7503 -2.4980 43 1 3.7314 3.2867 -3.3888 44 1 2.5132 3.5928 -1.2513 45 1 4.0431 4.5021 -1.2505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347310893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:56 Heat of formation + Delta-G solvation = -2.534014 kcal Electronic energy + Delta-G solvation = -26406.330896 eV Core-core repulsion = 22745.716150 eV Total energy + Delta-G solvation = -3660.614746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.43121 -40.07353 -36.47805 -35.53307 -33.75254 -33.12684 -32.59743 -31.14385 -30.16161 -28.53688 -26.05729 -25.79514 -24.55129 -23.45849 -22.52910 -21.46251 -20.92434 -19.71436 -18.15817 -17.95426 -17.25000 -16.35577 -16.11787 -15.76851 -15.19914 -15.05413 -14.56086 -14.48690 -14.36525 -13.94861 -13.49829 -13.40178 -12.96359 -12.89109 -12.85502 -12.60600 -12.40292 -12.13989 -11.98177 -11.82028 -11.69496 -11.39924 -11.31556 -11.21318 -11.13689 -11.01355 -11.00423 -10.81664 -10.64118 -10.53549 -10.35025 -10.06576 -9.60372 -9.46979 -9.16034 -8.81696 -7.18940 -6.43159 -4.20297 1.18633 2.15201 2.81709 3.01611 3.21091 3.34983 3.39691 3.50326 3.62488 3.99131 4.17511 4.44729 4.49379 4.60482 4.73309 4.91034 4.95679 4.97489 5.03303 5.09934 5.17378 5.22517 5.26103 5.32660 5.41643 5.45398 5.51836 5.57910 5.65881 5.69451 5.80412 5.80724 5.84099 5.87596 5.94084 5.95292 5.99902 6.04481 6.07466 6.16217 6.21895 6.26097 6.35337 7.12909 7.79695 8.28773 8.29550 9.00782 10.65679 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.003497 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.559908 B = 8004.638447 C = 8895.741793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.041 3.959 4 O -0.361 6.361 5 C 0.221 3.779 6 C 0.142 3.858 7 N -0.376 5.376 8 O 0.081 5.919 9 C 0.220 3.780 10 C -0.013 4.013 11 S -0.163 6.163 12 C -0.513 4.513 13 H 0.096 0.904 14 C 0.099 3.901 15 N -0.873 5.873 16 Si 0.855 3.145 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.237 1.237 20 N -0.473 5.473 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.139 4.139 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.273 0.727 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 -4.251 -18.626 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.035 4.035 4 O -0.279 6.279 5 C 0.179 3.821 6 C -0.132 4.132 7 N -0.085 5.085 8 O 0.023 5.977 9 C 0.000 4.000 10 C -0.162 4.162 11 S 0.063 5.937 12 C -0.660 4.660 13 H 0.114 0.886 14 C -0.111 4.111 15 N -0.509 5.509 16 Si 0.680 3.320 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.162 1.162 20 N -0.208 5.208 21 C -0.137 4.137 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.177 4.177 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.101 -5.661 -18.685 23.512 hybrid contribution -0.880 0.869 0.572 1.362 sum 12.221 -4.792 -18.113 22.370 Atomic orbital electron populations 1.21683 0.94581 1.01931 1.02523 1.21417 0.95980 0.95625 1.02533 1.23042 0.79915 0.97830 1.02753 1.87944 1.20975 1.24618 1.94354 1.19558 0.94194 0.82187 0.86112 1.26571 0.85692 1.00995 0.99964 1.74551 1.19772 1.13728 1.00488 1.85298 1.17405 1.55845 1.39186 1.28304 0.86414 0.93174 0.92103 1.21716 0.92387 1.02971 0.99092 1.84686 1.46078 1.24490 1.38490 1.22072 1.16877 1.06545 1.20535 0.88625 1.24687 0.93670 0.98009 0.94693 1.69913 1.20538 1.38151 1.22256 0.86772 0.79455 0.84397 0.81406 1.19050 1.19612 1.16171 1.71899 1.20843 1.16722 1.11367 1.21480 0.90472 1.02059 0.99697 1.21472 1.00460 0.99911 0.93355 1.21564 0.95717 1.00513 0.97968 1.21451 0.96076 1.01062 0.96429 1.22091 1.02439 0.99335 0.93836 0.92721 0.92320 0.91789 0.91881 0.91479 0.89528 0.93209 0.87212 0.86404 0.91643 0.90119 0.90654 0.91645 0.90757 0.91771 0.92088 0.91008 0.91670 0.90390 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.42 6.30 -26.73 -0.17 -1.59 16 3 C 0.04 0.55 5.10 37.16 0.19 0.74 16 4 O -0.36 -5.07 8.63 -35.23 -0.30 -5.37 16 5 C 0.22 2.92 0.68 -91.77 -0.06 2.85 16 6 C 0.14 2.27 6.45 -156.37 -1.01 1.26 16 7 N -0.38 -6.32 11.48 30.89 0.35 -5.96 16 8 O 0.08 1.41 11.31 18.10 0.20 1.61 16 9 C 0.22 3.82 7.77 -13.06 -0.10 3.72 16 10 C -0.01 -0.23 6.30 36.01 0.23 -0.01 16 11 S -0.16 -3.72 19.39 -107.50 -2.08 -5.81 16 12 C -0.51 -13.75 10.04 30.94 0.31 -13.44 16 13 H 0.10 2.68 8.03 -52.49 -0.42 2.25 16 14 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 15 N -0.87 -25.11 13.97 55.49 0.78 -24.34 16 16 Si 0.86 20.49 27.74 -169.99 -4.71 15.77 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 20 N -0.47 -8.08 8.86 -9.87 -0.09 -8.17 16 21 C -0.10 -1.15 4.45 -26.73 -0.12 -1.26 16 22 C -0.11 -1.06 5.78 -26.73 -0.15 -1.21 16 23 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 24 C -0.11 -1.01 5.78 -26.73 -0.15 -1.17 16 25 C -0.14 -1.54 4.34 -26.73 -0.12 -1.65 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.41 5.35 -51.93 -0.28 1.13 16 32 H 0.05 0.62 6.42 -51.93 -0.33 0.29 16 33 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 34 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.92 6.54 -51.93 -0.34 0.58 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -28.93 370.65 -8.56 -37.49 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.24 Total: 0.74 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.04 Total: -11.55 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 1.04 Total: -38.47 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.10 Total: -3.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.71 Total: 15.77 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.08 Total: -5.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.93 -8.56 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347310893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.954 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds