Wall clock time and date at job start Tue Mar 31 2020 14:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46834 * 2 1 4 4 O 1.42897 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00088 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47279 * 59.99972 * 5 4 3 7 7 N 1.29939 * 126.29085 * 125.02618 * 6 5 4 8 8 O 1.21296 * 110.25472 * 179.97438 * 7 6 5 9 9 C 1.33642 * 109.80886 * 359.97438 * 8 7 6 10 10 C 1.50706 * 126.55145 * 180.02562 * 9 8 7 11 11 S 1.81002 * 109.46835 * 270.01991 * 10 9 8 12 12 C 1.76199 * 99.99964 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99812 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99872 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00177 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47210 * 90.00169 * 16 14 12 18 18 H 1.48511 * 109.46969 * 209.99983 * 16 14 12 19 19 H 1.48494 * 109.47354 * 329.99560 * 16 14 12 20 20 N 1.31133 * 106.89942 * 359.76800 * 9 8 7 21 21 C 1.53000 * 109.47621 * 179.97438 * 5 4 3 22 22 C 1.52997 * 109.47060 * 59.99980 * 21 5 4 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 5 24 24 C 1.53005 * 109.47159 * 300.00546 * 23 22 21 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 23 22 26 26 H 1.09006 * 109.46846 * 60.00836 * 1 2 3 27 27 H 1.09003 * 109.47024 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47608 * 300.00599 * 1 2 3 29 29 H 1.08996 * 109.47886 * 239.99847 * 2 1 3 30 30 H 1.08997 * 109.46761 * 119.99311 * 2 1 3 31 31 H 1.09000 * 109.46910 * 59.99795 * 3 2 1 32 32 H 1.08997 * 109.46884 * 299.99235 * 3 2 1 33 33 H 1.08997 * 109.46976 * 30.01879 * 10 9 8 34 34 H 1.09000 * 109.47010 * 150.02691 * 10 9 8 35 35 H 0.96997 * 120.00005 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47398 * 180.02562 * 21 5 4 37 37 H 1.09001 * 109.47194 * 300.00330 * 21 5 4 38 38 H 1.08996 * 109.47853 * 180.02562 * 22 21 5 39 39 H 1.09002 * 109.47153 * 300.00319 * 22 21 5 40 40 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 42 42 H 1.09002 * 109.46935 * 299.99411 * 24 23 22 43 43 H 1.09001 * 109.46812 * 179.97438 * 24 23 22 44 44 H 1.08993 * 109.47194 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.46695 * 59.99734 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 3.6050 3.4967 1.2299 7 7 4.3783 4.0537 2.1132 8 8 3.7138 4.5773 2.9825 9 6 2.4140 4.3989 2.7283 10 6 1.2603 4.8932 3.5624 11 16 0.8232 3.6384 4.7915 12 6 -0.5110 4.4555 5.6019 13 1 -0.8157 5.4406 5.2810 14 6 -1.1703 3.8330 6.6527 15 7 -2.1668 4.4437 7.2585 16 14 -0.6428 2.1294 7.2082 17 1 0.3976 2.2520 8.2607 18 1 -1.8163 1.4015 7.7547 19 1 -0.0907 1.3802 6.0511 20 7 2.3341 3.7165 1.6114 21 6 5.5754 2.6273 0.0014 22 6 6.0279 1.8671 -1.2468 23 6 5.5775 2.6253 -2.4970 24 6 4.0522 2.7461 -2.4984 25 6 3.5997 3.5063 -1.2501 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.5471 5.8143 4.0698 34 1 0.4022 5.0852 2.9183 35 1 -2.6278 4.0085 7.9926 36 1 6.0187 3.6231 0.0015 37 1 5.8963 2.0870 0.8921 38 1 7.1144 1.7806 -1.2458 39 1 5.5846 0.8713 -1.2464 40 1 5.8994 2.0835 -3.3864 41 1 6.0208 3.6211 -2.4974 42 1 3.6088 1.7503 -2.4980 43 1 3.7314 3.2867 -3.3888 44 1 2.5132 3.5928 -1.2513 45 1 4.0431 4.5021 -1.2505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347310893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:55 Heat of formation + Delta-G solvation = -18.502463 kcal Electronic energy + Delta-G solvation = -26407.023340 eV Core-core repulsion = 22745.716150 eV Total energy + Delta-G solvation = -3661.307190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.77503 -41.05479 -37.39246 -36.84766 -34.90450 -34.70374 -34.25858 -31.97718 -31.15357 -29.92499 -27.90409 -27.03789 -25.69458 -24.58534 -23.49384 -22.43419 -21.97546 -20.66669 -19.95858 -19.32270 -18.67399 -17.34692 -17.29210 -17.15967 -16.71653 -16.31491 -16.08168 -15.74509 -15.36309 -14.93624 -14.84871 -14.74779 -14.33376 -13.84196 -13.79865 -13.57105 -13.51717 -13.40046 -13.22146 -13.06268 -13.05080 -12.95496 -12.72167 -12.60757 -12.40158 -12.13111 -11.96294 -11.92234 -11.75024 -11.47109 -11.37724 -11.29804 -11.20320 -11.04275 -10.61595 -10.52966 -9.11376 -8.53720 -6.28649 -0.24334 0.75909 1.19629 1.30373 1.44028 1.50891 1.72260 2.20122 2.29739 2.55978 2.57442 2.78698 2.85431 3.52407 3.61109 3.79059 3.98681 4.02401 4.06464 4.13229 4.16335 4.26392 4.33633 4.39894 4.41673 4.46014 4.52564 4.55106 4.60783 4.67603 4.79614 4.85476 4.87986 4.97906 5.00265 5.13444 5.17845 5.19816 5.24719 5.27660 5.31471 5.35866 5.52981 5.69117 6.07550 6.12197 6.89762 6.94332 8.58473 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.003497 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.559908 B = 8004.638447 C = 8895.741793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.042 3.958 4 O -0.367 6.367 5 C 0.214 3.786 6 C 0.142 3.858 7 N -0.382 5.382 8 O 0.076 5.924 9 C 0.213 3.787 10 C 0.003 3.997 11 S -0.178 6.178 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.050 3.950 15 N -0.912 5.912 16 Si 0.910 3.090 17 H -0.261 1.261 18 H -0.260 1.260 19 H -0.235 1.235 20 N -0.475 5.475 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.134 4.134 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.278 0.722 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 -5.219 -20.722 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.034 4.034 4 O -0.285 6.285 5 C 0.173 3.827 6 C -0.132 4.132 7 N -0.092 5.092 8 O 0.019 5.981 9 C -0.007 4.007 10 C -0.146 4.146 11 S 0.048 5.952 12 C -0.667 4.667 13 H 0.089 0.911 14 C -0.156 4.156 15 N -0.550 5.550 16 Si 0.732 3.268 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.159 1.159 20 N -0.211 5.211 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.173 4.173 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.440 -6.624 -20.780 26.157 hybrid contribution -1.242 1.244 1.131 2.090 sum 13.198 -5.380 -19.649 24.274 Atomic orbital electron populations 1.21669 0.93899 1.02785 1.02073 1.21414 0.96513 0.94602 1.02684 1.23016 0.79812 0.98676 1.01877 1.87945 1.21135 1.25148 1.94282 1.19947 0.95148 0.81906 0.85734 1.27223 0.85127 1.00432 1.00435 1.74552 1.19840 1.14168 1.00681 1.85289 1.17286 1.56074 1.39468 1.28120 0.86377 0.93751 0.92425 1.21612 0.93113 1.01852 0.98013 1.84470 1.44407 1.26444 1.39870 1.22228 1.17894 1.05900 1.20674 0.91056 1.25500 0.93743 1.01439 0.94921 1.69997 1.21867 1.39934 1.23186 0.85939 0.79463 0.80363 0.81049 1.18608 1.18462 1.15876 1.71961 1.21580 1.16237 1.11286 1.21512 0.89277 1.02445 1.00356 1.21461 1.01402 0.99155 0.92697 1.21570 0.94932 1.01023 0.97937 1.21456 0.96784 1.00577 0.95784 1.22086 1.01868 0.99577 0.93760 0.91526 0.90845 0.93836 0.90147 0.92823 0.92337 0.92054 0.85383 0.85428 0.91207 0.89722 0.92330 0.90023 0.91610 0.89956 0.91333 0.91570 0.89911 0.91318 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.91 71.98 0.71 -2.38 16 2 C -0.11 -2.63 6.30 30.60 0.19 -2.43 16 3 C 0.04 1.12 5.10 71.98 0.37 1.48 16 4 O -0.37 -9.95 8.63 -148.98 -1.29 -11.24 16 5 C 0.21 5.42 0.68 -11.54 -0.01 5.41 16 6 C 0.14 4.45 6.45 138.47 0.89 5.34 16 7 N -0.38 -12.62 11.48 -60.35 -0.69 -13.31 16 8 O 0.08 2.59 11.31 74.85 0.85 3.44 16 9 C 0.21 7.30 7.77 88.38 0.69 7.99 16 10 C 0.00 0.10 6.30 71.24 0.45 0.55 16 11 S -0.18 -8.08 19.39 -56.49 -1.10 -9.18 16 12 C -0.52 -28.19 10.04 67.95 0.68 -27.51 16 13 H 0.07 4.10 8.03 -2.91 -0.02 4.07 16 14 C 0.05 2.79 5.50 84.86 0.47 3.25 16 15 N -0.91 -53.27 13.97 21.65 0.30 -52.97 16 16 Si 0.91 42.22 27.74 68.60 1.90 44.12 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.23 -10.70 6.74 99.48 0.67 -10.03 16 20 N -0.48 -16.03 8.86 -303.21 -2.69 -18.71 16 21 C -0.10 -2.13 4.45 30.59 0.14 -2.00 16 22 C -0.11 -1.77 5.78 30.59 0.18 -1.60 16 23 C -0.12 -1.53 5.92 30.60 0.18 -1.35 16 24 C -0.11 -1.65 5.78 30.60 0.18 -1.48 16 25 C -0.13 -2.75 4.34 30.59 0.13 -2.62 16 26 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.90 5.35 -2.39 -0.01 1.89 16 32 H 0.06 1.46 6.42 -2.39 -0.02 1.44 16 33 H 0.13 4.07 8.14 -2.40 -0.02 4.05 16 34 H 0.13 4.29 8.14 -2.40 -0.02 4.28 16 35 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.19 7.68 -2.39 -0.02 1.17 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.07 1.10 7.68 -2.39 -0.02 1.09 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.52 6.54 -2.39 -0.02 1.51 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -62.11 370.65 3.47 -58.64 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.94 Total: 16.55 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 5.25 Total: -17.34 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.08 Total: -84.99 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.44 Total: -7.80 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.90 Total: 44.12 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.10 Total: -9.18 kcal Total: -62.11 3.47 -58.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347310893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.134 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds