Wall clock time and date at job start Tue Mar 31 2020 15:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46963 * 2 1 4 4 C 1.50701 * 109.46969 * 240.00381 * 2 1 3 5 5 H 1.08003 * 119.99674 * 265.26172 * 4 2 1 6 6 C 1.37876 * 120.00377 * 85.27050 * 4 2 1 7 7 N 1.31514 * 119.99990 * 185.04033 * 6 4 2 8 8 Si 1.86794 * 119.99883 * 5.03821 * 6 4 2 9 9 H 1.48500 * 109.47371 * 94.78558 * 8 6 4 10 10 H 1.48507 * 109.47211 * 214.78455 * 8 6 4 11 11 H 1.48502 * 109.47140 * 334.78377 * 8 6 4 12 12 N 1.46495 * 109.46881 * 119.99800 * 2 1 3 13 13 C 1.34767 * 120.00373 * 274.99964 * 12 2 1 14 14 O 1.21559 * 119.99917 * 0.02562 * 13 12 2 15 15 C 1.47841 * 120.00433 * 179.72702 * 13 12 2 16 16 C 1.39600 * 120.14484 * 0.02562 * 15 13 12 17 17 C 1.37936 * 119.85421 * 179.74025 * 16 15 13 18 18 C 1.38378 * 120.14490 * 0.51234 * 17 16 15 19 19 C 1.38335 * 120.29191 * 359.76045 * 18 17 16 20 20 C 1.50701 * 119.92594 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.46982 * 270.02329 * 20 19 18 22 22 C 1.31475 * 120.00084 * 114.97573 * 21 20 19 23 23 C 1.41986 * 120.91617 * 5.65963 * 22 21 20 24 24 C 1.35652 * 118.59861 * 179.69983 * 23 22 21 25 25 N 1.33779 * 120.40906 * 0.58615 * 24 23 22 26 26 C 1.30410 * 122.03359 * 359.70593 * 25 24 23 27 27 N 1.35650 * 121.41334 * 359.97438 * 26 25 24 28 28 H 0.97005 * 120.31292 * 180.02562 * 27 26 25 29 29 C 1.37976 * 120.14686 * 359.97438 * 19 18 17 30 30 H 1.08998 * 109.47008 * 65.01472 * 1 2 3 31 31 H 1.09000 * 109.46815 * 185.00769 * 1 2 3 32 32 H 1.08993 * 109.47308 * 305.00899 * 1 2 3 33 33 H 0.96997 * 119.99970 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99836 * 95.00770 * 12 2 1 35 35 H 1.08001 * 120.06701 * 359.97438 * 16 15 13 36 36 H 1.08002 * 119.92567 * 180.25196 * 17 16 15 37 37 H 1.07995 * 119.85188 * 179.74447 * 18 17 16 38 38 H 1.08998 * 109.47138 * 30.02292 * 20 19 18 39 39 H 1.09003 * 109.47211 * 150.02276 * 20 19 18 40 40 H 1.07995 * 120.70536 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.79588 * 180.30911 * 24 23 22 42 42 H 1.08000 * 119.29284 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.07323 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.2852 -1.7593 -1.1831 6 6 2.1693 -0.0212 -2.4168 7 7 2.5122 -0.6612 -3.5133 8 14 1.8678 1.8216 -2.4665 9 1 3.1582 2.5389 -2.3061 10 1 1.2564 2.1882 -3.7693 11 1 0.9491 2.2028 -1.3638 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8575 1.1611 2.4118 15 6 2.6340 -0.7166 3.5657 16 6 2.9620 -2.0723 3.5078 17 6 3.4209 -2.7167 4.6378 18 6 3.5464 -2.0248 5.8296 19 6 3.2178 -0.6826 5.8952 20 6 3.3571 0.0627 7.1976 21 7 2.1036 -0.0304 7.9500 22 6 2.0719 -0.6707 9.0979 23 6 3.2621 -1.1759 9.6845 24 6 3.1758 -1.8239 10.8731 25 7 1.9897 -1.9904 11.4690 26 6 0.8834 -1.5401 10.9457 27 7 0.8799 -0.8754 9.7632 28 1 0.0476 -0.5469 9.3887 29 6 2.7628 -0.0249 4.7709 30 1 -0.3633 0.4341 -0.9315 31 1 -0.3633 -1.0238 0.0897 32 1 -0.3633 0.5895 0.8417 33 1 2.6082 -0.1765 -4.3479 34 1 2.2491 -1.6317 1.1526 35 1 2.8602 -2.6145 2.5793 36 1 3.6788 -3.7645 4.5933 37 1 3.9023 -2.5349 6.7124 38 1 4.1655 -0.3759 7.7826 39 1 3.5822 1.1098 6.9947 40 1 4.2166 -1.0433 9.1969 41 1 4.0697 -2.2116 11.3391 42 1 -0.0500 -1.6991 11.4653 43 1 2.5069 1.0231 4.8234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348733223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:17 Heat of formation + Delta-G solvation = 57.818884 kcal Electronic energy + Delta-G solvation = -25805.778844 eV Core-core repulsion = 22044.629996 eV Total energy + Delta-G solvation = -3761.148848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24896 -39.84434 -38.22476 -36.17850 -34.91373 -34.64627 -32.64521 -32.06245 -31.11835 -30.14021 -29.30745 -26.40513 -25.26436 -25.03928 -23.81051 -22.92491 -21.53183 -20.68612 -19.47577 -19.06787 -17.99673 -17.59839 -16.94545 -16.56857 -15.83618 -15.73077 -15.49491 -15.38011 -14.79661 -14.65742 -14.58035 -14.15943 -13.85462 -13.42554 -13.12025 -13.07566 -12.68926 -12.60691 -12.38179 -12.22122 -11.86340 -11.55614 -11.46935 -11.18752 -11.12938 -10.81379 -10.75492 -10.50403 -10.41677 -9.83082 -9.57835 -9.22625 -9.19548 -8.86013 -8.74365 -8.68180 -8.08565 -7.95795 -6.21354 -4.24094 0.32940 1.00853 1.32574 1.57191 2.26361 3.18244 3.26386 3.30121 3.36040 3.44523 3.71485 3.96202 4.09328 4.19875 4.34787 4.45616 4.66123 4.71858 4.83317 4.90026 4.98000 5.11834 5.15801 5.32058 5.34712 5.40322 5.54627 5.63362 5.67343 5.89640 6.02942 6.13298 6.36030 6.41005 6.46378 6.52853 6.54160 6.58322 6.69958 6.92559 6.96799 7.21801 7.38384 7.44488 7.54419 7.68709 8.15015 8.55958 8.77386 8.96054 9.40564 10.90482 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.002176 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.192248 B =12863.508101 C =13164.732924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.232 3.768 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.870 3.130 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.255 1.255 12 N -0.696 5.696 13 C 0.543 3.457 14 O -0.554 6.554 15 C -0.122 4.122 16 C -0.086 4.086 17 C -0.128 4.128 18 C -0.096 4.096 19 C -0.090 4.090 20 C 0.107 3.893 21 N -0.595 5.595 22 C 0.390 3.610 23 C -0.272 4.272 24 C 0.135 3.865 25 N -0.564 5.564 26 C 0.388 3.612 27 N -0.616 5.616 28 H 0.424 0.576 29 C -0.044 4.044 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.393 0.607 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.207 0.793 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -4.838 29.931 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.130 3.870 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.696 3.304 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.179 1.179 12 N -0.344 5.344 13 C 0.329 3.671 14 O -0.434 6.434 15 C -0.125 4.125 16 C -0.105 4.105 17 C -0.146 4.146 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.023 4.023 21 N -0.321 5.321 22 C 0.119 3.881 23 C -0.299 4.299 24 C -0.002 4.002 25 N -0.287 5.287 26 C 0.102 3.898 27 N -0.239 5.239 28 H 0.262 0.738 29 C -0.063 4.063 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.224 0.776 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.643 -3.897 29.755 30.016 hybrid contribution 0.463 0.600 -0.879 1.161 sum -0.181 -3.297 28.876 29.064 Atomic orbital electron populations 1.22280 0.98649 1.00103 0.99787 1.19164 0.90861 0.94465 0.82538 0.93153 1.20993 1.45633 0.98247 0.92090 0.90367 1.24873 0.93793 0.98453 0.95263 1.69886 1.46789 1.36321 0.99679 0.86950 0.79578 0.85799 0.78035 1.20066 1.21015 1.17869 1.46391 1.64477 1.13823 1.09738 1.18299 0.78619 0.86768 0.83425 1.90712 1.51711 1.15738 1.85271 1.20248 1.03048 0.94352 0.94897 1.21418 0.96637 0.93616 0.98856 1.21014 1.00906 1.00019 0.92663 1.21086 0.99092 0.93663 0.97671 1.19656 1.00854 0.94080 0.94530 1.20839 0.90114 1.00271 0.91089 1.72536 1.28261 1.23961 1.07357 1.19010 0.84768 0.92458 0.91842 1.22488 0.99263 1.08133 1.00008 1.22235 0.95161 0.91513 0.91282 1.68186 0.98122 1.27365 1.35011 1.25093 0.99122 0.83914 0.81715 1.42993 1.10067 1.50277 1.20577 0.73751 1.21123 0.94279 1.00515 0.90412 0.92671 0.93570 0.95153 0.92306 0.77256 0.85276 0.85631 0.86560 0.92733 0.89463 0.83345 0.82524 0.77647 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.06 37.16 0.34 -3.07 16 2 C 0.23 5.71 2.09 -69.08 -0.14 5.56 16 3 H 0.05 1.35 5.14 -51.93 -0.27 1.08 16 4 C -0.53 -14.50 9.06 -34.44 -0.31 -14.82 16 5 H 0.08 2.23 8.02 -52.48 -0.42 1.81 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 8 Si 0.87 21.69 26.36 -169.99 -4.48 17.21 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.25 -6.25 5.98 56.52 0.34 -5.92 16 12 N -0.70 -14.74 5.02 -55.88 -0.28 -15.02 16 13 C 0.54 11.35 7.74 -12.34 -0.10 11.26 16 14 O -0.55 -13.43 16.01 5.31 0.09 -13.35 16 15 C -0.12 -2.07 5.87 -104.97 -0.62 -2.69 16 16 C -0.09 -1.21 9.54 -39.18 -0.37 -1.59 16 17 C -0.13 -1.52 10.03 -39.64 -0.40 -1.92 16 18 C -0.10 -1.12 9.69 -39.49 -0.38 -1.50 16 19 C -0.09 -1.18 5.46 -104.68 -0.57 -1.75 16 20 C 0.11 1.19 6.36 -5.19 -0.03 1.16 16 21 N -0.59 -6.95 10.66 -61.24 -0.65 -7.60 16 22 C 0.39 3.55 7.72 -155.64 -1.20 2.35 16 23 C -0.27 -2.07 9.30 -39.07 -0.36 -2.44 16 24 C 0.14 0.89 11.16 -17.63 -0.20 0.69 16 25 N -0.56 -3.71 10.36 -14.39 -0.15 -3.86 16 26 C 0.39 1.56 12.40 -89.89 -1.11 0.45 16 27 N -0.62 -3.55 5.43 -13.08 -0.07 -3.62 16 28 H 0.42 1.71 8.94 -40.82 -0.36 1.34 16 29 C -0.04 -0.69 9.24 -39.19 -0.36 -1.05 16 30 H 0.05 1.26 6.93 -51.93 -0.36 0.90 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.39 7.30 6.60 -40.82 -0.27 7.03 16 35 H 0.13 1.65 6.41 -52.49 -0.34 1.31 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.05 0.49 5.14 -51.93 -0.27 0.23 16 39 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.15 0.99 5.79 -52.49 -0.30 0.69 16 41 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.21 -0.17 8.06 -52.49 -0.42 -0.59 16 43 H 0.13 2.23 7.65 -52.48 -0.40 1.83 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -36.41 363.72 -10.37 -46.78 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.15 Total: 6.82 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -5.93 Total: -7.18 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.38 Total: -55.76 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.48 Total: 17.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.41 -10.37 -46.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348733223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.595 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds